Rmu_co8510209.1_g000001

Patatin-like phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8510209.1
OG0017577
Physical Location & Seq
Reverse (-)
1 .. 1448
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8510209.1_g000001.1.cds

Sequence Viewer

Length: 539 bp
atgcttcgtcagatacttggagctagaagactgcacgatactgttacacgaattgttatacccacttttgacatcaagctgcttcaaccccatgccttctcaacctttgaggcagagatcgatgcttctgaggatgcattgttatcagatgtttgcatcggtacttcgtcggctccaacttatcttccagctcatcacttcaaaactagagactcaggaggaaatgagagggaattccatcttgttgatggtggtgtggcagcaaacaatcctgcattgctggcaatgaagccaacagggacagtgttcccaggaagtcgagatgctctgtctgcaccacaaagcctagactacagcaaatacctagtgctctctctaggcactggaacttcaaagacagcgacgaagtacgatgcaaaaatggcatcaaagtgggggatcatgggctggctctacaaagatggccactgccctttagttgatgcttttacttttgctagtggagacatggttgaccttcacatgtcattgattttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

179

Amino Acids

19.45

Weight (kDa)

6.13

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017577)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15800
malus_domestica MD00G1045100.v1.1
prunus_persica Prupe.7G135400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105081
rosa_laevigata RLG00000017401
rosa_multiflora Rmu_co8510209.1_g000001 Rmu_sc0005160.1_g000009
rosa_roxburghii Rroxscaffold_2G00138440
rosa_rugosa Rorug02G0126200
rosa_samantha Rh2BG185000 Rh2DG183100
rosa_wichuraiana Rw2G013880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 2 cut(s) 163, 410
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 3 cut(s) 86, 202, 393
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 3 cut(s) 23, 79, 191
AluI AGCT 3 cut(s) 23, 79, 191
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 2 cut(s) 204, 498
AlwI GGATC 1 cut(s) 446
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 79, 260
ApoI RAATTY 1 cut(s) 233
BalI TGGCCA 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 66, 272
BccI CCATC 3 cut(s) 242, 246, 455
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 204, 498
BfaI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
BfmI CTRYAG 1 cut(s) 352
BisI GCNGC 2 cut(s) 80, 261
BlsI GCNGC 2 cut(s) 81, 262
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 7 cut(s) 112, 124, 165, 313, 403, 434, 472
BpiI GAAGAC 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 275, 291
BseBI CCWGG 1 cut(s) 312
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 139
BseMI GCAATG 2 cut(s) 275, 291
BseMII CTCAG 2 cut(s) 120, 228
BseNI ACTGG 1 cut(s) 388
BseXI GCAGC 2 cut(s) 66, 272
BsgI GTGCAG 2 cut(s) 17, 318
BshFI GGCC 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 372
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 204, 498
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 117, 438
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 121, 227
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 275, 291
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 117, 438
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 43, 304
BstC8I GCNNGC 2 cut(s) 282, 449
BstDEI CTNAG 2 cut(s) 129, 214
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 120, 441
BstMAI GTCTC 2 cut(s) 204, 498
BstMBI GATC 2 cut(s) 117, 438
BstMWI GCNNNNNNNGC 3 cut(s) 281, 332, 422
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 66, 272
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 3 cut(s) 309, 381, 466
Cac8I GCNNGC 2 cut(s) 282, 449
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 2 cut(s) 162, 409
CviAII CATG 4 cut(s) 92, 442, 508, 523
CviJI RGCY 9 cut(s) 23, 79, 173, 191, 292, 345, 447, 451, 465
CviKI_1 RGCY 9 cut(s) 23, 79, 173, 191, 292, 345, 447, 451, 465
CviQI GTAC 2 cut(s) 162, 409
DdeI CTNAG 2 cut(s) 129, 214
DpnI GATC 2 cut(s) 119, 440
DpnII GATC 2 cut(s) 117, 438
EaeI YGGCCR 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 139
FaeI CATG 4 cut(s) 95, 445, 511, 526
FaiI YATR 5 cut(s) 59, 93, 443, 509, 524
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 91, 441, 507, 522
Fnu4HI GCNGC 2 cut(s) 80, 261
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 80, 261
FspBI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
GluI GCNGC 2 cut(s) 80, 261
HaeIII GGCC 1 cut(s) 465
Hin1II CATG 4 cut(s) 95, 445, 511, 526
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 12, 130, 148
Hpy188III TCNNGA 2 cut(s) 216, 320
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 2 cut(s) 172, 406
HpyAV CCTTC 2 cut(s) 106, 527
HpyCH4III ACNGT 2 cut(s) 43, 304
HpyCH4V TGCA 6 cut(s) 34, 137, 156, 275, 335, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 332, 422
HpyF3I CTNAG 2 cut(s) 129, 214
Hsp92II CATG 4 cut(s) 95, 445, 511, 526
Kzo9I GATC 2 cut(s) 117, 438
LmnI GCTCC 2 cut(s) 20, 178
LpnPI CCDG 9 cut(s) 201, 201, 266, 282, 285, 297, 324, 369, 433
Lsp1109I GCAGC 2 cut(s) 66, 272
LweI GCATC 7 cut(s) 112, 124, 165, 313, 403, 434, 472
MaeI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 119, 440
MboI GATC 2 cut(s) 117, 438
MboII GAAGA 2 cut(s) 39, 176
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 2 cut(s) 51, 233
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 4 cut(s) 103, 124, 212, 222
Mox20I TGGCCA 1 cut(s) 465
Mph1103I ATGCAT 1 cut(s) 139
MscI TGGCCA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 430
Msp20I TGGCCA 1 cut(s) 465
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 281, 332, 422
NdeII GATC 2 cut(s) 117, 438
NlaIII CATG 4 cut(s) 95, 445, 511, 526
NlaIV GGNNCC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 1 cut(s) 526
PciI ACATGT 1 cut(s) 522
PkrI GCNGC 2 cut(s) 81, 262
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 174
RsaI GTAC 2 cut(s) 163, 410
RsaNI GTAC 2 cut(s) 162, 409
RseI CAYNNNNRTG 1 cut(s) 430
SatI GCNGC 2 cut(s) 80, 261
Sau3AI GATC 2 cut(s) 117, 438
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 25, 81, 107, 193, 366, 519
SfaNI GCATC 7 cut(s) 112, 124, 165, 313, 403, 434, 472
SfcI CTRYAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 2 cut(s) 51, 233
SspMI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 43, 304
TaqI TCGA 2 cut(s) 120, 319
TasI AATT 2 cut(s) 51, 233
TscAI CASTG 3 cut(s) 309, 388, 473
TseI GCWGC 2 cut(s) 79, 260
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 3 cut(s) 309, 388, 473
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 6 cut(s) 24, 207, 347, 365, 377, 498
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.