FvH4_1g17900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008104
Physical Location & Seq
Reverse (-)
10406195 .. 10406883
689 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17900.t1

Sequence Viewer

Length: 483 bp
ATGGATGGAAAATGCAAGTTTTGTAAGTATGAGTTCATTGCCGGTGATGACAAAGTTAATTATCAACACATGGAGGGAAAACATGGTTTGTTCATTTGTGTCCAATGTAATGAGACTTTCCCATACAAGGAGTATGGGGACCTTCTTCAGCGCCATTTCAACAATGTGAAGCACTATGGCTTCAAATTCTGTAACAAGAGCAAGTGTCTCAACAGGATCTTTCAGATCGGAAGCAACCACAAATGTATCCACCCAAAGCCACAGAAGCAGCCGAAGTCGAAGAAGCTGAAGAAGAGGGGGGGAAGGAAGGAAGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAAGAGGGGGCACAAGCAACAACTAGCGGTAGCGTACAAAGCGATTCATGTCATTTTTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

19.02

Weight (kDa)

4.65

Isoelectric Point (pI)

104.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 444
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 131, 308
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 160, 184
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 107, 212
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 185
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 430
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BbvI GCAGC 1 cut(s) 280
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 107, 212
BfaI CTAG 1 cut(s) 441
BfoI RGCGCY 1 cut(s) 154
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 36
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 107, 212
BsmFI GGGAC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 216, 225
BspACI CCGC 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 2 cut(s) 216, 225
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 219, 228
BstMAI GTCTC 2 cut(s) 107, 212
BstMBI GATC 2 cut(s) 216, 225
BstMWI GCNNNNNNNGC 2 cut(s) 265, 456
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuI GTATCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 452
CviAII CATG 3 cut(s) 70, 83, 465
CviJI RGCY 4 cut(s) 180, 259, 271, 286
CviKI_1 RGCY 4 cut(s) 180, 259, 271, 286
CviQI GTAC 1 cut(s) 452
DpnI GATC 2 cut(s) 218, 227
DpnII GATC 2 cut(s) 216, 225
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 131, 308
EcoO109I RGGNCCY 1 cut(s) 139
FaeI CATG 3 cut(s) 73, 86, 468
FaiI YATR 8 cut(s) 30, 71, 84, 124, 135, 177, 466, 477
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 69, 82, 464
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 154
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 153
Hin1II CATG 3 cut(s) 73, 86, 468
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 1 cut(s) 461
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 225, 230
HpyAV CCTTC 3 cut(s) 152, 297, 301
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 456
Hsp92II CATG 3 cut(s) 73, 86, 468
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 216, 225
LpnPI CCDG 2 cut(s) 55, 199
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 218, 227
MboI GATC 2 cut(s) 216, 225
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 2 cut(s) 58, 185
MseI TTAA 2 cut(s) 57, 481
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 265, 456
NdeII GATC 2 cut(s) 216, 225
NlaIII CATG 3 cut(s) 73, 86, 468
NlaIV GGNNCC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 57, 481
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 2 cut(s) 216, 225
Sau96I GGNCC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 430
SetI ASST 2 cut(s) 144, 288
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 2 cut(s) 58, 185
SsiI CCGC 1 cut(s) 444
SspMI CTAG 1 cut(s) 441
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 58, 185
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 2 cut(s) 57, 481
Tru9I TTAA 2 cut(s) 57, 481
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 25, 82, 453
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 185
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.