Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006288

Physical Location & Seq

Genomic Coordinates Forward (+)

11511146 .. 11512726

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCTTGTCCTCTATGCGGAATCTGGCTCGGTCCGGCCTCCGTCTTCCGTTATTGAGGACCCGGTTCGAAAGAACCCAGCTTGAAAGGACCCAGTTCGTCAGGACCTTTTGGAAGAGTAGCAAAGGGCGAATGGAAAAAGACTTGGAAGAGAAGCTGAAACAGCTCATTGACCAGGGGATTAAAGTTGAGATCGTCGAAGATGGCAACCAGCCAAGAGGCACGTACACTATAGAAGTACATCCCCACACTTTGGAGGTGATGGAAGTTTGGGGCAAGCAGATGAAGATTTTAGGTATGCTGAGTGATCTATACATTCTTGCTGAAGTCAAGTTGACTTTGAATGAGTTCGGTTTGTTGGCGTCCTTGTACAAGCACGGCCCAAGGGACACTTGGAGAGCAGTAGCTCAGAGAATGAATGGGAAAGCTATTGATTCTGCTCATGAGCTAAAGACAACAGAGACATGGCTGGATAGGATTGGACCATTGGCGAAAGAAATATCTACGGTTCTCATCGTTCATCAAAAACAAAAGAAGACAGCCTCACAACCTGAAGAAGATAAGCTAGAGGTCCTTCCCCATGACTTTGGCTCCATTTTGATCAAACTTTCCCAACTTCGTTTGAAATGGAAGGTCATTGCTTCTTTGGAGAGTGCAACACTATTGGATGACTCTGAGATGGAAGACATGAATGAGATAGAATCGATAATCAGAGATGTACACAAGGTTGTGGTTGTCCAACAACTGTTGCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

252

Amino Acids

29.05

Weight (kDa)

8.63

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13250
fragaria_vesca	FvH4_4g28060
malus_domestica	MD13G1046300.v1.1 MD16G1048100.v1.1
prunus_persica	Prupe.1G305600_v2.0.a1
pyrus_communis	pycom13g04060 pycom13g14600 pycom16g04200
rosa_chinensis	RchiOBHm_Chr4g0387681 RchiOBHm_Chr4g0435811
rosa_laevigata	RLG00000006557
rosa_multiflora	Rmu_co8360435.1_g000001 Rmu_sc0010838.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361740 Rroxscaffold_5G00376990
rosa_rugosa	Rorug02G0138300 Rorug04G0289700 Rorug05G0129600
rosa_samantha	Rh2BG035000 Rh2DG292100 Rh4AG119700 Rh4AG344000 Rh4CG367300 Rh4DG346800 Rh6BG278600 Rh6CG170100
rosa_wichuraiana	Rw4G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	345, 573
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	4 cut(s)	227, 240, 371, 720
AfiI	CCNNNNNNNGG	2 cut(s)	18, 253
AgsI	TTSAA	3 cut(s)	86, 343, 625
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	7 cut(s)	82, 157, 166, 407, 428, 448, 565
AluI	AGCT	7 cut(s)	82, 157, 166, 407, 428, 448, 565
Alw26I	GTCTC	1 cut(s)	455
AoxI	GGCC	3 cut(s)	3, 37, 379
Asp700I	GAANNNNTTC	1 cut(s)	347
AspS9I	GGNCC	7 cut(s)	33, 60, 90, 105, 380, 482, 571
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	6 cut(s)	33, 60, 90, 105, 482, 571
BbsI	GAAGAC	3 cut(s)	38, 542, 690
BccI	CCATC	3 cut(s)	197, 256, 673
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	176
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	231
Bme1390I	CCNGG	2 cut(s)	64, 176
Bme18I	GGWCC	6 cut(s)	33, 60, 90, 105, 482, 571
BmgT120I	GGNCC	7 cut(s)	33, 60, 90, 105, 380, 482, 571
BmiI	GGNNCC	3 cut(s)	62, 92, 592
BmrFI	CCNGG	2 cut(s)	64, 176
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	3 cut(s)	38, 542, 690
Bpu14I	TTCGAA	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	175, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 253
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	704
BseDI	CCNNGG	2 cut(s)	175, 383
BseGI	GGATG	2 cut(s)	241, 673
BseLI	CCNNNNNNNGG	2 cut(s)	18, 253
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	3 cut(s)	293, 422, 666
BseNI	ACTGG	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	3 cut(s)	5, 39, 381
BshVI	ATCGAT	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	36, 64
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	18, 253
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	5, 39, 381
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1407I	TGTACA	2 cut(s)	369, 718
Bsp143I	GATC	3 cut(s)	192, 307, 600
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	5, 39, 381
BspCNI	CTCAG	3 cut(s)	294, 421, 667
BspDI	ATCGAT	1 cut(s)	704
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	62, 92, 592
BspT104I	TTCGAA	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	636
BsrGI	TGTACA	2 cut(s)	369, 718
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	175, 383
BssMI	GATC	3 cut(s)	192, 307, 600
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	508, 747
Bst6I	CTCTTC	2 cut(s)	110, 144
BstACI	GRCGYC	1 cut(s)	362
BstAUI	TGTACA	2 cut(s)	369, 718
BstBAI	YACGTR	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	302, 408, 675
BstF5I	GGATG	2 cut(s)	241, 673
BstKTI	GATC	3 cut(s)	195, 310, 603
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	3 cut(s)	192, 307, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	62, 174
BstSFI	CTRYAG	1 cut(s)	231
BstV2I	GAAGAC	3 cut(s)	38, 542, 690
BstXI	CCANNNNNNTGG	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	5, 39, 381
BsuTUI	ATCGAT	1 cut(s)	704
BtsCI	GGATG	2 cut(s)	241, 673
Cac8I	GCNNGC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	442
Cfr13I	GGNCC	7 cut(s)	33, 60, 90, 105, 380, 482, 571
ClaI	ATCGAT	1 cut(s)	704
CpoI	CGGWCCG	1 cut(s)	33
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	226, 239, 370, 719
CspI	CGGWCCG	1 cut(s)	33
CviAII	CATG	4 cut(s)	443, 465, 581, 688
CviQI	GTAC	4 cut(s)	226, 239, 370, 719
DdeI	CTNAG	3 cut(s)	302, 408, 675
DpnI	GATC	3 cut(s)	194, 309, 602
DpnII	GATC	3 cut(s)	192, 307, 600
Eam1104I	CTCTTC	2 cut(s)	110, 144
EarI	CTCTTC	2 cut(s)	110, 144
Eco130I	CCWWGG	1 cut(s)	383
Eco47I	GGWCC	6 cut(s)	33, 60, 90, 105, 482, 571
Eco57I	CTGAAG	2 cut(s)	345, 573
EcoO109I	RGGNCCY	4 cut(s)	60, 90, 105, 571
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	4 cut(s)	446, 468, 584, 691
FaiI	YATR	8 cut(s)	17, 233, 299, 313, 444, 466, 582, 689
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	442, 464, 580, 687
FbaI	TGATCA	1 cut(s)	600
FokI	GGATG	2 cut(s)	228, 680
FspBI	CTAG	1 cut(s)	566
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	3 cut(s)	5, 39, 381
HapII	CCGG	2 cut(s)	36, 64
HgaI	GACGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	446, 468, 584, 691
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	4 cut(s)	22, 434, 671, 701
HpaII	CCGG	2 cut(s)	36, 64
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	228, 336, 721
Hpy188I	TCNGA	3 cut(s)	411, 676, 713
Hpy188III	TCNNGA	2 cut(s)	103, 443
Hpy8I	GTNNAC	3 cut(s)	228, 336, 721
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	584, 625
HpyCH4III	ACNGT	2 cut(s)	508, 747
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	656, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	3 cut(s)	302, 408, 675
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	446, 468, 584, 691
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	3 cut(s)	192, 307, 600
LmnI	GCTCC	1 cut(s)	596
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	224
MalI	GATC	3 cut(s)	194, 309, 602
MboI	GATC	3 cut(s)	192, 307, 600
MboII	GAAGA	9 cut(s)	38, 127, 161, 212, 298, 547, 566, 569, 695
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	7 cut(s)	22, 50, 51, 212, 250, 553, 562
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	183
MspI	CCGG	2 cut(s)	36, 64
MspR9I	CCNGG	2 cut(s)	64, 176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	192, 307, 600
NlaIII	CATG	4 cut(s)	446, 468, 584, 691
NlaIV	GGNNCC	3 cut(s)	62, 92, 592
NspV	TTCGAA	1 cut(s)	69
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	22, 434, 701
PflMI	CCANNNNNTGG	1 cut(s)	253
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Ppu21I	YACGTR	1 cut(s)	225
PpuMI	RGGWCCY	4 cut(s)	60, 90, 105, 571
Psp5II	RGGWCCY	4 cut(s)	60, 90, 105, 571
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	62, 92, 592
PspPI	GGNCC	7 cut(s)	33, 60, 90, 105, 380, 482, 571
PspPPI	RGGWCCY	4 cut(s)	60, 90, 105, 571
RsaI	GTAC	4 cut(s)	227, 240, 371, 720
RsaNI	GTAC	4 cut(s)	226, 239, 370, 719
Rsr2I	CGGWCCG	1 cut(s)	33
RsrII	CGGWCCG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	192, 307, 600
Sau96I	GGNCC	7 cut(s)	33, 60, 90, 105, 380, 482, 571
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	64, 176
SfcI	CTRYAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	6 cut(s)	33, 60, 90, 105, 482, 571
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	62, 174
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	508, 747
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	69, 198, 704
TaqII	GACCGA	1 cut(s)	21
TatI	WGTACW	3 cut(s)	238, 369, 718
TfiI	GAWTC	3 cut(s)	22, 434, 701
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TspDTI	ATGAA	4 cut(s)	299, 431, 509, 704
TspGWI	ACGGA	2 cut(s)	32, 39
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	6 cut(s)	33, 60, 90, 105, 482, 571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.