pycom16g04200

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
2605765 .. 2606850
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04200.1

Sequence Viewer

Length: 1086 bp
ATGCCACCGGGCCATGGTCCTCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCCGCCCTCTTCGCGACCGGGACCGTACAATTCCTGGTGAATTCCGCCGCCGTCGAGCTTCCTAAGTTCCGAGAAGCACCTGCATTCCGCAACGGACGAGGATGCCCCCGCACCGCATGGTCCTCGCTGGACCAGCACTCCCACTACGACCCCTCCATCATCCACATCGCCATGACATTGGACGCTACCTACCTCCGGGGCTCCGTTGCCGGCGTCTTCTCCGTCCTCCAGCACGCCACTTGCCCCGAAAACATCGTCTTCCACTTCATCGCTGCCTCCCACCGCAACCGCCGCTCCTCCGACCTCCTCCGCCACGCCATCACTTCCACCTTCCCCTACCTCACATTCCACGTCTACCACTTCGACTCCAGCCTCGTCAGGGGCAAGATCTCCTACTCCGTCCGCCGCGCCCTCGACCAGCCCCTCAACTATGCGCGCATCTACCTCGCCGATCTCCTCCCCTCGGGCGTCCGCCGCATCATCTACTTCGACTCCGACCTCATTGTCGTCGACGACGTGGCGAAGCTGTGGCGGATTGACCTCGGGCGGCGCGTGCTGGGGGCGCCGGAGTACTGCCACGCCAATTTCACCAACTACTTCACCCCGAAATTCTGGTCGAACGCGGCGTTCGCGGCGGAATTCAAGGGGCGGAGGGCGTGCTACTTCAACACCGGGGTGATGGTGATCGATCTGTGGAAGTGGAGGGAGGGCAAGTACACGCAGAAGCTGGAGCACTGGATGCGGGTGCAGAAACGGTGTCGTATCTACGAGCTGGGCTCGCTGCCGCCGTTTCTACTGGTGTTCGCGGGTGACGTGGAGGGGGTGGAGCACAGGTGGAACCAGCACGGCCTCGGCGGTGACAACGTGGAGGGGCTGTGTAGGGACCTCCACCCGGGCCCGGTAAGCCTCCTGCACTGGAGCGGGAAGGGGAAGCCGTGGCTGAGATTGGACTCCAAGCGGCCGTGTCCGTTGGATAGCTTGTGGGCCCCCTATGATCTGTACCGTCACTCGTCATTGTTCTCTGATAGCTGA

Protein Analysis

362

Amino Acids

41.13

Weight (kDa)

9.28

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 73 - 333 3.3e-51 Glycosyl transferase family 8
Glyco_transf_24 PF18404 161 - 261 2.6e-09 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
AasI GACNNNNNNGTC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 616
AccBSI CCGCTC 2 cut(s) 348, 975
AccI GTMKAC 2 cut(s) 408, 564
AccII CGCG 7 cut(s) 68, 462, 490, 606, 677, 686, 860
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 3 cut(s) 94, 662, 692
AcyI GRCGYC 3 cut(s) 267, 522, 617
AfaI GTAC 4 cut(s) 81, 626, 770, 1055
AfiI CCNNNNNNNGG 6 cut(s) 14, 249, 433, 517, 946, 952
AgsI TTSAA 2 cut(s) 697, 721
AjiI CACGTC 3 cut(s) 406, 571, 868
AjnI CCWGG 1 cut(s) 87
AleI CACNNNNGTG 1 cut(s) 728
AluBI AGCT 6 cut(s) 112, 580, 781, 826, 1032, 1083
AluI AGCT 6 cut(s) 112, 580, 781, 826, 1032, 1083
Alw21I GWGCWC 2 cut(s) 789, 885
AlwNI CAGNNNCTG 1 cut(s) 781
Ama87I CYCGRG 3 cut(s) 517, 596, 946
AoxI GGCC 5 cut(s) 10, 901, 949, 1013, 1038
ApaI GGGCCC 2 cut(s) 953, 1042
ApeKI GCWGC 2 cut(s) 326, 835
ApoI RAATTY 3 cut(s) 94, 662, 692
ArsI GACNNNNNNTTYG 4 cut(s) 294, 326, 653, 685
AspLEI GCGC 5 cut(s) 464, 490, 492, 606, 619
AsuC2I CCSGG 7 cut(s) 9, 73, 251, 727, 947, 948, 953
AsuHPI GGTGA 7 cut(s) 103, 634, 646, 742, 748, 875, 923
AvaI CYCGRG 3 cut(s) 517, 596, 946
AvaII GGWCC 5 cut(s) 17, 75, 174, 184, 937
BaeGI GKGCMC 2 cut(s) 953, 1042
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 4 cut(s) 257, 833, 953, 1042
BbsI GAAGAC 2 cut(s) 262, 304
Bbv12I GWGCWC 2 cut(s) 789, 885
BbvI GCAGC 2 cut(s) 313, 822
BccI CCATC 3 cut(s) 218, 380, 727
BceAI ACGGC 5 cut(s) 89, 826, 916, 973, 1000
BcgI CGANNNNNNTGC 4 cut(s) 159, 193, 481, 515
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 7 cut(s) 9, 73, 251, 727, 947, 948, 953
BfoI RGCGCY 1 cut(s) 620
BfuAI ACCTGC 1 cut(s) 142
BglII AGATCT 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 626
Bme1390I CCNGG 8 cut(s) 9, 73, 89, 251, 727, 947, 948, 953
Bme18I GGWCC 5 cut(s) 17, 75, 174, 184, 937
BmeT110I CYCGRG 3 cut(s) 517, 596, 946
BmgBI CACGTC 3 cut(s) 406, 571, 868
BmiI GGNNCC 8 cut(s) 76, 256, 618, 893, 938, 951, 1040, 1041
BmrFI CCNGG 8 cut(s) 9, 73, 89, 251, 727, 947, 948, 953
BmsI GCATC 4 cut(s) 146, 501, 540, 783
BpiI GAAGAC 2 cut(s) 262, 304
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BpmI CTGGAG 4 cut(s) 266, 406, 803, 991
BpuMI CCSGG 7 cut(s) 9, 73, 251, 727, 947, 948, 953
Bsa29I ATCGAT 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 737
BsaHI GRCGYC 3 cut(s) 267, 522, 617
BsaJI CCNNGG 8 cut(s) 13, 250, 516, 595, 726, 904, 946, 989
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 249, 433, 517, 946, 952
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 794, 855, 974
Bse8I GATNNNNATC 1 cut(s) 737
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 8 cut(s) 13, 250, 516, 595, 726, 904, 946, 989
BseGI GGATG 3 cut(s) 161, 213, 798
BseJI GATNNNNATC 1 cut(s) 737
BseLI CCNNNNNNNGG 6 cut(s) 14, 249, 433, 517, 946, 952
BseMII CTCAG 1 cut(s) 986
BseNI ACTGG 3 cut(s) 794, 855, 974
BsePI GCGCGC 1 cut(s) 488
BseSI GKGCMC 2 cut(s) 953, 1042
BseX3I CGGCCG 1 cut(s) 1013
BseXI GCAGC 2 cut(s) 313, 822
BseYI CCCAGC 2 cut(s) 610, 826
BsgI GTGCAG 2 cut(s) 821, 950
Bsh1236I CGCG 7 cut(s) 68, 462, 490, 606, 677, 686, 860
Bsh1285I CGRYCG 2 cut(s) 72, 1016
BshFI GGCC 5 cut(s) 12, 903, 951, 1015, 1040
BshNI GGYRCC 1 cut(s) 616
BshVI ATCGAT 1 cut(s) 741
BsiEI CGRYCG 2 cut(s) 72, 1016
BsiHKAI GWGCWC 2 cut(s) 789, 885
BsiHKCI CYCGRG 3 cut(s) 517, 596, 946
BsiSI CCGG 8 cut(s) 8, 72, 250, 264, 620, 726, 947, 953
BslFI GGGAC 2 cut(s) 88, 950
BslI CCNNNNNNNGG 6 cut(s) 14, 249, 433, 517, 946, 952
BsmFI GGGAC 2 cut(s) 88, 950
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 5 cut(s) 12, 903, 951, 1015, 1040
BsoBI CYCGRG 3 cut(s) 517, 596, 946
Bsp120I GGGCCC 2 cut(s) 949, 1038
Bsp1286I GDGCHC 6 cut(s) 257, 789, 833, 885, 953, 1042
Bsp143I GATC 5 cut(s) 441, 505, 738, 742, 1048
Bsp19I CCATGG 1 cut(s) 13
Bsp68I TCGCGA 1 cut(s) 68
BspANI GGCC 5 cut(s) 12, 903, 951, 1015, 1040
BspCNI CTCAG 1 cut(s) 987
BspDI ATCGAT 1 cut(s) 741
BspFNI CGCG 7 cut(s) 68, 462, 490, 606, 677, 686, 860
BspLI GGNNCC 8 cut(s) 76, 256, 618, 893, 938, 951, 1040, 1041
BspMI ACCTGC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 616
BsrBI CCGCTC 2 cut(s) 348, 975
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 3 cut(s) 794, 855, 974
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 8 cut(s) 13, 250, 516, 595, 726, 904, 946, 989
BssHII GCGCGC 1 cut(s) 488
BssMI GATC 5 cut(s) 441, 505, 738, 742, 1048
BssNI GRCGYC 3 cut(s) 267, 522, 617
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 79, 810, 1058
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 3 cut(s) 267, 522, 617
BstAPI GCANNNNNTGC 1 cut(s) 793
BstC8I GCNNGC 6 cut(s) 265, 288, 490, 608, 712, 833
BstDEI CTNAG 2 cut(s) 117, 995
BstDSI CCRYGG 2 cut(s) 13, 989
BstF5I GGATG 3 cut(s) 161, 213, 798
BstFNI CGCG 7 cut(s) 68, 462, 490, 606, 677, 686, 860
BstH2I RGCGCY 1 cut(s) 620
BstHHI GCGC 5 cut(s) 464, 490, 492, 606, 619
BstKTI GATC 5 cut(s) 444, 508, 741, 745, 1051
BstMBI GATC 5 cut(s) 441, 505, 738, 742, 1048
BstMCI CGRYCG 2 cut(s) 72, 1016
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 8 cut(s) 7, 71, 87, 249, 725, 945, 946, 951
BstSLI GKGCMC 2 cut(s) 953, 1042
BstUI CGCG 7 cut(s) 68, 462, 490, 606, 677, 686, 860
BstV1I GCAGC 2 cut(s) 313, 822
BstV2I GAAGAC 2 cut(s) 262, 304
BstX2I RGATCY 1 cut(s) 441
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 441
BstZI CGGCCG 1 cut(s) 1013
Bsu15I ATCGAT 1 cut(s) 741
BsuRI GGCC 5 cut(s) 12, 903, 951, 1015, 1040
BsuTUI ATCGAT 1 cut(s) 741
BtgI CCRYGG 2 cut(s) 13, 989
BtgZI GCGATG 2 cut(s) 205, 307
BtrI CACGTC 3 cut(s) 406, 571, 868
BtsCI GGATG 3 cut(s) 161, 213, 798
BtsIMutI CAGTG 2 cut(s) 787, 967
BtuMI TCGCGA 1 cut(s) 68
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 6 cut(s) 265, 288, 490, 608, 712, 833
CaiI CAGNNNCTG 1 cut(s) 781
CfoI GCGC 5 cut(s) 464, 490, 492, 606, 619
Cfr10I RCCGGY 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 946
ClaI ATCGAT 1 cut(s) 741
CseI GACGC 3 cut(s) 245, 256, 511
Csp6I GTAC 4 cut(s) 80, 625, 769, 1054
CviAII CATG 3 cut(s) 14, 171, 226
CviQI GTAC 4 cut(s) 80, 625, 769, 1054
DdeI CTNAG 2 cut(s) 117, 995
DinI GGCGCC 1 cut(s) 618
DpnI GATC 5 cut(s) 443, 507, 740, 744, 1050
DpnII GATC 5 cut(s) 441, 505, 738, 742, 1048
DrdI GACNNNNNNGTC 1 cut(s) 557
DseDI GACNNNNNNGTC 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 1013
EagI CGGCCG 1 cut(s) 1013
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 7 cut(s) 88, 353, 446, 515, 601, 704, 718
EclXI CGGCCG 1 cut(s) 1013
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 4 cut(s) 257, 833, 953, 1042
Eco47I GGWCC 5 cut(s) 17, 75, 174, 184, 937
Eco52I CGGCCG 1 cut(s) 1013
Eco88I CYCGRG 3 cut(s) 517, 596, 946
EcoO109I RGGNCCY 2 cut(s) 937, 1039
EcoRI GAATTC 2 cut(s) 94, 692
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 4 cut(s) 257, 833, 953, 1042
EgeI GGCGCC 1 cut(s) 618
EheI GGCGCC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 17, 174, 229
FaiI YATR 5 cut(s) 15, 172, 227, 486, 1047
FaqI GGGAC 2 cut(s) 88, 950
FatI CATG 3 cut(s) 13, 170, 225
FauI CCCGC 4 cut(s) 170, 789, 853, 968
FblI GTMKAC 2 cut(s) 408, 564
FokI GGATG 3 cut(s) 168, 200, 805
FriOI GRGCYC 4 cut(s) 257, 833, 953, 1042
GlaI GCGC 5 cut(s) 463, 489, 491, 605, 618
GsaI CCCAGC 2 cut(s) 614, 830
GsuI CTGGAG 4 cut(s) 266, 406, 803, 991
HaeII RGCGCY 1 cut(s) 620
HaeIII GGCC 5 cut(s) 12, 903, 951, 1015, 1040
HapII CCGG 8 cut(s) 8, 72, 250, 264, 620, 726, 947, 953
HgaI GACGC 3 cut(s) 245, 256, 511
HhaI GCGC 5 cut(s) 464, 490, 492, 606, 619
Hin1I GRCGYC 3 cut(s) 267, 522, 617
Hin1II CATG 3 cut(s) 17, 174, 229
Hin6I GCGC 5 cut(s) 462, 488, 490, 604, 617
HinP1I GCGC 5 cut(s) 462, 488, 490, 604, 617
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 3 cut(s) 419, 545, 1004
HpaII CCGG 8 cut(s) 8, 72, 250, 264, 620, 726, 947, 953
HphI GGTGA 7 cut(s) 103, 634, 646, 742, 748, 875, 923
Hpy166II GTNNAC 3 cut(s) 409, 565, 771
Hpy188I TCNGA 4 cut(s) 125, 355, 550, 1078
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 3 cut(s) 409, 565, 771
Hpy99I CGWCG 4 cut(s) 110, 566, 569, 572
HpyAV CCTTC 2 cut(s) 394, 973
HpyCH4III ACNGT 3 cut(s) 79, 810, 1058
HpyCH4IV ACGT 4 cut(s) 405, 570, 867, 918
HpyCH4V TGCA 3 cut(s) 137, 802, 967
HpyF3I CTNAG 2 cut(s) 117, 995
HpySE526I ACGT 4 cut(s) 405, 570, 867, 918
Hsp92I GRCGYC 3 cut(s) 267, 522, 617
Hsp92II CATG 3 cut(s) 17, 174, 229
HspAI GCGC 5 cut(s) 462, 488, 490, 604, 617
KasI GGCGCC 1 cut(s) 616
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 5 cut(s) 441, 505, 738, 742, 1048
LmnI GCTCC 5 cut(s) 260, 353, 784, 880, 972
Lsp1109I GCAGC 2 cut(s) 313, 822
LweI GCATC 4 cut(s) 146, 501, 540, 783
MaeII ACGT 4 cut(s) 405, 570, 867, 918
MaeIII GTNAC 3 cut(s) 863, 911, 1058
MalI GATC 5 cut(s) 443, 507, 740, 744, 1050
MbiI CCGCTC 2 cut(s) 348, 975
MboI GATC 5 cut(s) 441, 505, 738, 742, 1048
MboII GAAGA 3 cut(s) 55, 262, 304
MflI RGATCY 1 cut(s) 441
MhlI GDGCHC 6 cut(s) 257, 789, 833, 885, 953, 1042
MluCI AATT 5 cut(s) 83, 94, 637, 662, 692
Mly113I GGCGCC 1 cut(s) 617
MlyI GAGTC 3 cut(s) 413, 539, 998
MmeI TCCRAC 3 cut(s) 378, 573, 1005
MroNI GCCGGC 1 cut(s) 263
MslI CAYNNNNRTG 2 cut(s) 224, 728
MspI CCGG 8 cut(s) 8, 72, 250, 264, 620, 726, 947, 953
MspR9I CCNGG 8 cut(s) 9, 73, 89, 251, 727, 947, 948, 953
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 7 cut(s) 68, 462, 490, 606, 677, 686, 860
NaeI GCCGGC 1 cut(s) 265
NarI GGCGCC 1 cut(s) 617
NciI CCSGG 7 cut(s) 9, 73, 251, 727, 947, 948, 953
NcoI CCATGG 1 cut(s) 13
NdeII GATC 5 cut(s) 441, 505, 738, 742, 1048
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 3 cut(s) 17, 174, 229
NlaIV GGNNCC 8 cut(s) 76, 256, 618, 893, 938, 951, 1040, 1041
NmeAIII GCCGAG 1 cut(s) 885
NmuCI GTSAC 3 cut(s) 863, 911, 1058
NruI TCGCGA 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 728
PaqCI CACCTGC 1 cut(s) 142
PauI GCGCGC 1 cut(s) 488
PcsI WCGNNNNNNNCGW 5 cut(s) 567, 603, 677, 839, 864
PctI GAATGC 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 265
PleI GAGTC 3 cut(s) 413, 539, 998
PluTI GGCGCC 1 cut(s) 620
PpsI GAGTC 3 cut(s) 413, 539, 998
PpuMI RGGWCCY 1 cut(s) 937
Psp5II RGGWCCY 1 cut(s) 937
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 2 cut(s) 610, 826
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 8 cut(s) 76, 256, 618, 893, 938, 951, 1040, 1041
PspOMI GGGCCC 2 cut(s) 949, 1038
PspPPI RGGWCCY 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 441
PteI GCGCGC 1 cut(s) 488
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 4 cut(s) 81, 626, 770, 1055
RsaNI GTAC 4 cut(s) 80, 625, 769, 1054
RseI CAYNNNNRTG 2 cut(s) 224, 728
SalI GTCGAC 1 cut(s) 563
Sau3AI GATC 5 cut(s) 441, 505, 738, 742, 1048
ScaI AGTACT 1 cut(s) 626
SchI GAGTC 3 cut(s) 413, 539, 998
ScrFI CCNGG 8 cut(s) 9, 73, 89, 251, 727, 947, 948, 953
SduI GDGCHC 6 cut(s) 257, 789, 833, 885, 953, 1042
SfaNI GCATC 4 cut(s) 146, 501, 540, 783
SfoI GGCGCC 1 cut(s) 618
SgrDI CGTCGACG 1 cut(s) 563
SinI GGWCC 5 cut(s) 17, 75, 174, 184, 937
SmaI CCCGGG 1 cut(s) 948
SmiMI CAYNNNNRTG 2 cut(s) 224, 728
Sse9I AATT 5 cut(s) 83, 94, 637, 662, 692
SspDI GGCGCC 1 cut(s) 616
StyD4I CCNGG 8 cut(s) 7, 71, 87, 249, 725, 945, 946, 951
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 79, 810, 1058
TaiI ACGT 4 cut(s) 408, 573, 870, 921
TaqI TCGA 7 cut(s) 108, 417, 468, 543, 564, 671, 741
TasI AATT 5 cut(s) 83, 94, 637, 662, 692
TatI WGTACW 2 cut(s) 624, 768
TscAI CASTG 2 cut(s) 794, 974
TseFI GTSAC 3 cut(s) 863, 911, 1058
TseI GCWGC 2 cut(s) 326, 835
Tsp45I GTSAC 3 cut(s) 863, 911, 1058
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 5 cut(s) 162, 247, 265, 442, 1011
TspMI CCCGGG 1 cut(s) 946
TspRI CASTG 2 cut(s) 794, 974
VpaK11BI GGWCC 5 cut(s) 17, 75, 174, 184, 937
XapI RAATTY 3 cut(s) 94, 662, 692
XmaI CCCGGG 1 cut(s) 946
XmiI GTMKAC 2 cut(s) 408, 564
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.