Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360435.1

Orthogroup ID

OG0006288

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 884

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360435.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 883 bp

atggtgtccttattcccattctctcactccaccagagtagcgcagatgccaccaaatcatcaccgccgactctgcgcattcctcctcgtcctcgccgcggcagtacattttccggctgaaaccgccgccgtggagctcccgaagttccgggaagcgcctgcattccggaatggccgcgggtgcccccggacggcgtggtcctcgctggacgcgcactcccacaacccctccatcatccacatcgccatgaccttggactccacctacctccgcggctccgtcgccggcgtcttctccgtcctccagcacgccacgtgtcccgagaacatcgtcttccacttcatctccacgcgccaccgccgcgacgacctgcgccgcgtcatcaccgccaccttcccctacctcaagttccgcctctaccacttcgactgcaacctcgtcaagggcaagatctcgtactcggtgcgacgcgcgctcgaccagccgctcaactacgcgcgcatctacctcgccgatctcctcccctccggcgtacgccgcatcatctacttcgactcggacctgatcgtcgtcgacgacgtggcgaagctctggcgcatcaacctcgggcggcgcgtgctgggcgcgccggagtactgccacgcgaacttcaccaactacttcaccccgaagttctggtcaaacgcggcgctggcggcggagttctcggggcggagcgcgtgctatttcaacacgggggtgatggtgatcgatctgtggaagtggagggagggcaagtacacggagaagctggagcactggatgagcgtgcagaaacggcaccgtatttacgagctggggtcgctgccgccgtttctgttggttttcgcgggtgacgtggagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

294

Amino Acids

33.76

Weight (kDa)

9.59

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13250
fragaria_vesca	FvH4_4g28060
malus_domestica	MD13G1046300.v1.1 MD16G1048100.v1.1
prunus_persica	Prupe.1G305600_v2.0.a1
pyrus_communis	pycom13g04060 pycom13g14600 pycom16g04200
rosa_chinensis	RchiOBHm_Chr4g0387681 RchiOBHm_Chr4g0435811
rosa_laevigata	RLG00000006557
rosa_multiflora	Rmu_co8360435.1_g000001 Rmu_sc0010838.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361740 Rroxscaffold_5G00376990
rosa_rugosa	Rorug02G0138300 Rorug04G0289700 Rorug05G0129600
rosa_samantha	Rh2BG035000 Rh2DG292100 Rh4AG119700 Rh4AG344000 Rh4CG367300 Rh4DG346800 Rh6BG278600 Rh6CG170100
rosa_wichuraiana	Rw4G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	196, 566
Acc16I	TGCGCA	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	180, 819
AccBSI	CCGCTC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	5 cut(s)	105, 458, 534, 635, 779
AfiI	CCNNNNNNNGG	3 cut(s)	97, 190, 442
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	730
AjiI	CACGTC	2 cut(s)	580, 877
AleI	CACNNNNGTG	1 cut(s)	737
AluBI	AGCT	4 cut(s)	136, 589, 790, 835
AluI	AGCT	4 cut(s)	136, 589, 790, 835
Alw21I	GWGCWC	2 cut(s)	138, 798
Ama87I	CYCGRG	3 cut(s)	320, 605, 706
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	844
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
AscI	GGCGCGCC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	198, 559
AsuC2I	CCSGG	2 cut(s)	149, 187
AsuHPI	GGTGA	6 cut(s)	53, 376, 643, 655, 751, 757
AvaI	CYCGRG	3 cut(s)	320, 605, 706
AvaII	GGWCC	2 cut(s)	198, 559
BaeGI	GKGCMC	1 cut(s)	185
BanI	GGYRCC	2 cut(s)	180, 819
BanII	GRGCYC	1 cut(s)	138
BbrPI	CACGTG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	283, 325
Bbv12I	GWGCWC	2 cut(s)	138, 798
BbvI	GCAGC	1 cut(s)	831
BccI	CCATC	2 cut(s)	239, 736
BceAI	ACGGC	4 cut(s)	113, 207, 833, 835
BcgI	CGANNNNNNTGC	4 cut(s)	490, 524, 586, 620
BcnI	CCSGG	2 cut(s)	149, 187
BfoI	RGCGCY	2 cut(s)	158, 692
BfuAI	ACCTGC	1 cut(s)	378
BglII	AGATCT	1 cut(s)	450
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	149, 187
Bme18I	GGWCC	2 cut(s)	198, 559
BmeT110I	CYCGRG	3 cut(s)	320, 605, 706
BmgBI	CACGTC	2 cut(s)	580, 877
BmgT120I	GGNCC	2 cut(s)	198, 559
BmiI	GGNNCC	3 cut(s)	182, 277, 821
BmrFI	CCNGG	2 cut(s)	149, 187
BmsI	GCATC	4 cut(s)	36, 510, 549, 606
BpiI	GAAGAC	2 cut(s)	283, 325
BpmI	CTGGAG	2 cut(s)	287, 812
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	149, 187
Bsa29I	ATCGAT	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	746
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	7 cut(s)	96, 129, 175, 185, 252, 271, 604
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	8 cut(s)	200, 212, 230, 242, 329, 359, 761, 791
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 190, 442
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	803
Bse8I	GATNNNNATC	1 cut(s)	746
BseAI	TCCGGA	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	7 cut(s)	96, 129, 175, 185, 252, 271, 604
BseGI	GGATG	2 cut(s)	234, 807
BseJI	GATNNNNATC	1 cut(s)	746
BseLI	CCNNNNNNNGG	3 cut(s)	97, 190, 442
BseNI	ACTGG	1 cut(s)	803
BsePI	GCGCGC	3 cut(s)	471, 497, 624
BseRI	GAGGAG	2 cut(s)	74, 509
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	831
BseYI	CCCAGC	2 cut(s)	619, 835
BsgI	GTGCAG	1 cut(s)	830
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	2 cut(s)	180, 819
BshVI	ATCGAT	1 cut(s)	750
BsiHKAI	GWGCWC	2 cut(s)	138, 798
BsiHKCI	CYCGRG	3 cut(s)	320, 605, 706
BsiSI	CCGG	7 cut(s)	113, 148, 166, 187, 285, 528, 629
BsiWI	CGTACG	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	3 cut(s)	97, 190, 442
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	2 cut(s)	77, 161
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	3 cut(s)	320, 605, 706
Bsp1286I	GDGCHC	3 cut(s)	138, 185, 798
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	450, 514, 564, 747, 751
BspANI	GGCC	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	750
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	182, 277, 821
BspMI	ACCTGC	1 cut(s)	378
BspT107I	GGYRCC	2 cut(s)	180, 819
BsrBI	CCGCTC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	803
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	7 cut(s)	96, 129, 175, 185, 252, 271, 604
BssHII	GCGCGC	3 cut(s)	471, 497, 624
BssMI	GATC	5 cut(s)	450, 514, 564, 747, 751
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	824
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	315
BstDSI	CCRYGG	4 cut(s)	96, 129, 175, 271
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	234, 807
BstH2I	RGCGCY	2 cut(s)	158, 692
BstKTI	GATC	5 cut(s)	453, 517, 567, 750, 754
BstMBI	GATC	5 cut(s)	450, 514, 564, 747, 751
BstSCI	CCNGG	2 cut(s)	147, 185
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	831
BstV2I	GAAGAC	2 cut(s)	283, 325
BstX2I	RGATCY	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	450
Bsu15I	ATCGAT	1 cut(s)	750
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	750
BtgI	CCRYGG	4 cut(s)	96, 129, 175, 271
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	2 cut(s)	580, 877
BtsCI	GGATG	2 cut(s)	234, 807
BtsIMutI	CAGTG	1 cut(s)	796
BveI	ACCTGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	198, 559
Cfr42I	CCGCGG	3 cut(s)	99, 178, 274
ClaI	ATCGAT	1 cut(s)	750
CseI	GACGC	4 cut(s)	218, 277, 367, 477
Csp6I	GTAC	5 cut(s)	104, 457, 533, 634, 778
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	8 cut(s)	116, 136, 174, 276, 484, 589, 790, 835
CviKI_1	RGCY	8 cut(s)	116, 136, 174, 276, 484, 589, 790, 835
CviQI	GTAC	5 cut(s)	104, 457, 533, 634, 778
DpnI	GATC	5 cut(s)	452, 516, 566, 749, 753
DpnII	GATC	5 cut(s)	450, 514, 564, 747, 751
DrdI	GACNNNNNNGTC	2 cut(s)	196, 566
DseDI	GACNNNNNNGTC	2 cut(s)	196, 566
EaeI	YGGCCR	1 cut(s)	172
EciI	GGCGGA	3 cut(s)	401, 713, 727
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	198, 559
Eco53kI	GAGCTC	1 cut(s)	136
Eco72I	CACGTG	1 cut(s)	315
Eco88I	CYCGRG	3 cut(s)	320, 605, 706
EcoICRI	GAGCTC	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	250
FaiI	YATR	1 cut(s)	248
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	1 cut(s)	246
FauI	CCCGC	2 cut(s)	170, 862
FblI	GTMKAC	1 cut(s)	573
FokI	GGATG	2 cut(s)	221, 814
FriOI	GRGCYC	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	76
GsaI	CCCAGC	2 cut(s)	623, 839
GsuI	CTGGAG	2 cut(s)	287, 812
HaeII	RGCGCY	2 cut(s)	158, 692
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	7 cut(s)	113, 148, 166, 187, 285, 528, 629
HgaI	GACGC	4 cut(s)	218, 277, 367, 477
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	3 cut(s)	69, 257, 554
HpaII	CCGG	7 cut(s)	113, 148, 166, 187, 285, 528, 629
HphI	GGTGA	6 cut(s)	53, 376, 643, 655, 751, 757
Hpy166II	GTNNAC	2 cut(s)	574, 780
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	3 cut(s)	139, 166, 320
Hpy8I	GTNNAC	2 cut(s)	574, 780
Hpy99I	CGWCG	7 cut(s)	284, 368, 471, 572, 575, 578, 581
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	3 cut(s)	314, 579, 876
HpyCH4V	TGCA	3 cut(s)	161, 432, 811
HpySE526I	ACGT	3 cut(s)	314, 579, 876
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	250
Kpn2I	TCCGGA	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
KspI	CCGCGG	3 cut(s)	99, 178, 274
Kzo9I	GATC	5 cut(s)	450, 514, 564, 747, 751
LmnI	GCTCC	5 cut(s)	133, 141, 281, 714, 793
Lsp1109I	GCAGC	1 cut(s)	831
LweI	GCATC	4 cut(s)	36, 510, 549, 606
MaeII	ACGT	3 cut(s)	314, 579, 876
MaeIII	GTNAC	1 cut(s)	872
MalI	GATC	5 cut(s)	452, 516, 566, 749, 753
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	5 cut(s)	450, 514, 564, 747, 751
MboII	GAAGA	2 cut(s)	283, 325
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	3 cut(s)	138, 185, 798
MlyI	GAGTC	3 cut(s)	63, 251, 548
MreI	CGCCGGCG	1 cut(s)	284
MroI	TCCGGA	1 cut(s)	165
MroNI	GCCGGC	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	245, 737
MspA1I	CMGCKG	3 cut(s)	98, 177, 273
MspI	CCGG	7 cut(s)	113, 148, 166, 187, 285, 528, 629
MspR9I	CCNGG	2 cut(s)	149, 187
Mva1269I	GAATGC	2 cut(s)	77, 161
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	2 cut(s)	149, 187
NdeII	GATC	5 cut(s)	450, 514, 564, 747, 751
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	3 cut(s)	182, 277, 821
NmuCI	GTSAC	1 cut(s)	872
NsbI	TGCGCA	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	737
PalAI	GGCGCGCC	1 cut(s)	624
PauI	GCGCGC	3 cut(s)	471, 497, 624
PcsI	WCGNNNNNNNCGW	5 cut(s)	573, 576, 612, 848, 873
PctI	GAATGC	2 cut(s)	77, 161
PdiI	GCCGGC	1 cut(s)	286
Pfl23II	CGTACG	1 cut(s)	532
PfoI	TCCNGGA	1 cut(s)	147
PleI	GAGTC	3 cut(s)	63, 251, 548
PmaCI	CACGTG	1 cut(s)	315
PmlI	CACGTG	1 cut(s)	315
PpsI	GAGTC	3 cut(s)	63, 251, 548
Ppu21I	YACGTR	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	315
PspFI	CCCAGC	2 cut(s)	619, 835
PspLI	CGTACG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	182, 277, 821
PspPI	GGNCC	2 cut(s)	198, 559
PsuI	RGATCY	1 cut(s)	450
PteI	GCGCGC	3 cut(s)	471, 497, 624
RsaI	GTAC	5 cut(s)	105, 458, 534, 635, 779
RsaNI	GTAC	5 cut(s)	104, 457, 533, 634, 778
RseI	CAYNNNNRTG	2 cut(s)	245, 737
SacI	GAGCTC	1 cut(s)	138
SacII	CCGCGG	3 cut(s)	99, 178, 274
SalI	GTCGAC	1 cut(s)	572
Sau3AI	GATC	5 cut(s)	450, 514, 564, 747, 751
Sau96I	GGNCC	2 cut(s)	198, 559
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	3 cut(s)	63, 251, 548
ScrFI	CCNGG	2 cut(s)	149, 187
SduI	GDGCHC	3 cut(s)	138, 185, 798
SfaNI	GCATC	4 cut(s)	36, 510, 549, 606
Sfr303I	CCGCGG	3 cut(s)	99, 178, 274
SgrAI	CRCCGGYG	1 cut(s)	284
SgrBI	CCGCGG	3 cut(s)	99, 178, 274
SgrDI	CGTCGACG	1 cut(s)	572
SgsI	GGCGCGCC	1 cut(s)	624
SinI	GGWCC	2 cut(s)	198, 559
SmiMI	CAYNNNNRTG	2 cut(s)	245, 737
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	147, 185
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	3 cut(s)	317, 582, 879
TaqI	TCGA	5 cut(s)	426, 477, 552, 573, 750
TatI	WGTACW	3 cut(s)	103, 633, 777
TscAI	CASTG	1 cut(s)	803
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	1 cut(s)	844
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	1 cut(s)	331
TspGWI	ACGGA	3 cut(s)	268, 286, 797
TspRI	CASTG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	198, 559
XagI	CCTNNNNNAGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	573
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.