Rroxscaffold_5G00376990

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006288
Physical Location & Seq
Forward (+)
57558890 .. 57559988
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376990.1

Sequence Viewer

Length: 1062 bp
ATGGTCTCCTTATTCCCATTCTCTCACTCCACCAGAGTAGCGCAGATGCCACCAAATCATCACAGCCGACTCTGCACTTTCGTCCTCGTCCTCGTCCTCGCCGCGGTCGTACATTTTCCGGCGGAAACCGCCGCCGTGGAGATCCCGAAGTTCCGGGAAGCGCCTGCATTCCGGAATGGCCGCGGGTGCCCCCGGACGGCGTGGTCCCCGCTGGACGCGCACTCCCACAACCCCTCCATCATCCACATCGCCATGACCTTGGACTCCACCTACCTCCGCGGCTCCGTCGCCGGCGTCTTCTCCGTCCTCCAGCACGCCACGTGTCCCGAGAACATCGTCTTCCACTTCATCTCCACGCGCCACCGCCGCGACGACCTCCGCCGCGTCATCACGGCCACCTTCCCCTACCTCAAGGCAAGATCTCGTACTCGGTGCGACGCGCGCTCGACCAGCCGCTCAACTACGCGCGCATCTACCTGGCCGATCTCCTCCTCCGGCGTACGCCGCATCATCTACTTCGACTCCGACCTGATCGTCGTCGACGACGTGGCGAAGCTCTGGCGCATCAACCTCGGGCGGCGCGTGCTGGGCGCGCCGGAGTACTGCCACGCGAACTTCACCAACTACTTCACCCCGAAGTTCTGGTCAAACGCGGCGCTGGCGGCGGAGTTCTCGGGGCGGAGCGCGTGCTATTTCAACACGGGGGTGATGGTGATCGATCTGTGGAAGTGGAGGGAGGGCAAGTACACGGAGAAGCTGGAGCACTGGATGAGCGTGCAGAAACGGCACCGCATTTACGAGCTGGGGTCGCTCCCGCCGTTTCTGTTGGTTTTCGCGGGTGACGTGGAGGGGGTGGAGCACAGGTGGAACCAGCACGGACTCGGCGGTGACAACCTGGAAGGGCTCTGTAGGGACCTCCACCCTGGCCCGGTCAGCCTCCTCCATTGGAGCGGTAAGGGCAAGCCCTGGCTCCGATTGGACTCCAAAAGGCCGTGCCCCTTGGATAGCCTCTGGGCCCCGTACGACCTCTTTCGTCACTCCTCTCTCTTCGCGGATAGCTGA

Protein Analysis

353

Amino Acids

40.12

Weight (kDa)

9.58

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 82 - 325 3.9e-43 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 202, 533
AccB1I GGYRCC 2 cut(s) 186, 786
AccBSI CCGCTC 2 cut(s) 456, 951
AccI GTMKAC 1 cut(s) 540
AccIII TCCGGA 1 cut(s) 171
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 3 cut(s) 178, 393, 479
AcvI CACGTG 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 6 cut(s) 111, 427, 501, 602, 746, 1022
AfiI CCNNNNNNNGG 3 cut(s) 103, 196, 928
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 1 cut(s) 697
AjiI CACGTC 2 cut(s) 547, 844
AjnI CCWGG 4 cut(s) 476, 894, 922, 965
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 4 cut(s) 556, 757, 802, 1059
AluI AGCT 4 cut(s) 556, 757, 802, 1059
Alw21I GWGCWC 2 cut(s) 765, 861
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 3 cut(s) 326, 572, 673
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 6 cut(s) 178, 393, 479, 925, 989, 1014
ApaI GGGCCC 1 cut(s) 1018
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AscI GGCGCGCC 1 cut(s) 591
AspS9I GGNCC 5 cut(s) 204, 913, 926, 1014, 1015
AsuC2I CCSGG 3 cut(s) 155, 193, 929
AsuHPI GGTGA 6 cut(s) 610, 622, 718, 724, 851, 899
AvaI CYCGRG 3 cut(s) 326, 572, 673
AvaII GGWCC 2 cut(s) 204, 913
BaeGI GKGCMC 3 cut(s) 191, 998, 1018
BanI GGYRCC 2 cut(s) 186, 786
BanII GRGCYC 2 cut(s) 906, 1018
BbrPI CACGTG 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 289, 331
Bbv12I GWGCWC 2 cut(s) 765, 861
BccI CCATC 2 cut(s) 245, 703
BceAI ACGGC 6 cut(s) 119, 213, 408, 800, 802, 976
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 4 cut(s) 478, 896, 924, 967
BcnI CCSGG 3 cut(s) 155, 193, 929
BcoDI GTCTC 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 907
BfoI RGCGCY 2 cut(s) 164, 659
BglII AGATCT 1 cut(s) 419
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 7 cut(s) 155, 193, 478, 896, 924, 929, 967
Bme18I GGWCC 2 cut(s) 204, 913
BmeT110I CYCGRG 3 cut(s) 326, 572, 673
BmgBI CACGTC 2 cut(s) 547, 844
BmgT120I GGNCC 5 cut(s) 204, 913, 926, 1014, 1015
BmiI GGNNCC 9 cut(s) 188, 206, 283, 788, 869, 914, 971, 1016, 1017
BmrFI CCNGG 7 cut(s) 155, 193, 478, 896, 924, 929, 967
BmsI GCATC 4 cut(s) 36, 479, 516, 573
BpiI GAAGAC 2 cut(s) 289, 331
BpmI CTGGAG 2 cut(s) 293, 779
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 3 cut(s) 155, 193, 929
Bsa29I ATCGAT 1 cut(s) 717
BsaAI YACGTR 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 196, 928
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 713
BseAI TCCGGA 1 cut(s) 171
BseBI CCWGG 4 cut(s) 478, 896, 924, 967
BseCI ATCGAT 1 cut(s) 717
BseGI GGATG 2 cut(s) 240, 774
BseJI GATNNNNATC 1 cut(s) 713
BseLI CCNNNNNNNGG 3 cut(s) 103, 196, 928
BseNI ACTGG 1 cut(s) 770
BsePI GCGCGC 3 cut(s) 440, 466, 591
BseRI GAGGAG 4 cut(s) 478, 481, 929, 1030
BseSI GKGCMC 3 cut(s) 191, 998, 1018
BseYI CCCAGC 2 cut(s) 586, 802
BsgI GTGCAG 2 cut(s) 58, 797
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 6 cut(s) 180, 395, 481, 927, 991, 1016
BshNI GGYRCC 2 cut(s) 186, 786
BshVI ATCGAT 1 cut(s) 717
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 765, 861
BsiHKCI CYCGRG 3 cut(s) 326, 572, 673
BsiSI CCGG 8 cut(s) 119, 154, 172, 193, 291, 495, 596, 929
BsiWI CGTACG 2 cut(s) 499, 1020
BslFI GGGAC 3 cut(s) 190, 309, 926
BslI CCNNNNNNNGG 3 cut(s) 103, 196, 928
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 3 cut(s) 190, 309, 926
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 6 cut(s) 180, 395, 481, 927, 991, 1016
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 3 cut(s) 326, 572, 673
Bsp120I GGGCCC 1 cut(s) 1014
Bsp1286I GDGCHC 6 cut(s) 191, 765, 861, 906, 998, 1018
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 6 cut(s) 141, 419, 483, 531, 714, 718
BspANI GGCC 6 cut(s) 180, 395, 481, 927, 991, 1016
BspDI ATCGAT 1 cut(s) 717
BspEI TCCGGA 1 cut(s) 171
BspLI GGNNCC 9 cut(s) 188, 206, 283, 788, 869, 914, 971, 1016, 1017
BspPI GGATC 1 cut(s) 136
BspT107I GGYRCC 2 cut(s) 186, 786
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 2 cut(s) 456, 951
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 290
BssHII GCGCGC 3 cut(s) 440, 466, 591
BssMI GATC 6 cut(s) 141, 419, 483, 531, 714, 718
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 258, 999
Bst2UI CCWGG 4 cut(s) 478, 896, 924, 967
Bst6I CTCTTC 1 cut(s) 1052
BstACI GRCGYC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 321
BstDSI CCRYGG 4 cut(s) 102, 135, 181, 277
BstF5I GGATG 2 cut(s) 240, 774
BstH2I RGCGCY 2 cut(s) 164, 659
BstKTI GATC 6 cut(s) 144, 422, 486, 534, 717, 721
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 6 cut(s) 141, 419, 483, 531, 714, 718
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 4 cut(s) 478, 896, 924, 967
BstSCI CCNGG 7 cut(s) 153, 191, 476, 894, 922, 927, 965
BstSFI CTRYAG 1 cut(s) 907
BstSLI GKGCMC 3 cut(s) 191, 998, 1018
BstV2I GAAGAC 2 cut(s) 289, 331
BstX2I RGATCY 2 cut(s) 141, 419
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 2 cut(s) 141, 419
Bsu15I ATCGAT 1 cut(s) 717
BsuRI GGCC 6 cut(s) 180, 395, 481, 927, 991, 1016
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 4 cut(s) 102, 135, 181, 277
BtgZI GCGATG 1 cut(s) 232
BtrI CACGTC 2 cut(s) 547, 844
BtsCI GGATG 2 cut(s) 240, 774
BtsIMutI CAGTG 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 5 cut(s) 204, 913, 926, 1014, 1015
Cfr42I CCGCGG 3 cut(s) 105, 184, 280
ClaI ATCGAT 1 cut(s) 717
CseI GACGC 4 cut(s) 224, 283, 373, 446
Csp6I GTAC 6 cut(s) 110, 426, 500, 601, 745, 1021
CviAII CATG 1 cut(s) 253
CviQI GTAC 6 cut(s) 110, 426, 500, 601, 745, 1021
DpnI GATC 6 cut(s) 143, 421, 485, 533, 716, 720
DpnII GATC 6 cut(s) 141, 419, 483, 531, 714, 718
DrdI GACNNNNNNGTC 2 cut(s) 202, 533
DseDI GACNNNNNNGTC 2 cut(s) 202, 533
EaeI YGGCCR 3 cut(s) 178, 393, 479
Eam1104I CTCTTC 1 cut(s) 1052
EarI CTCTTC 1 cut(s) 1052
EciI GGCGGA 4 cut(s) 137, 368, 680, 694
Eco130I CCWWGG 2 cut(s) 258, 999
Eco24I GRGCYC 2 cut(s) 906, 1018
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 204, 913
Eco72I CACGTG 1 cut(s) 321
Eco88I CYCGRG 3 cut(s) 326, 572, 673
EcoO109I RGGNCCY 2 cut(s) 913, 1015
EcoRII CCWGG 4 cut(s) 476, 894, 922, 965
EcoT14I CCWWGG 2 cut(s) 258, 999
EcoT38I GRGCYC 2 cut(s) 906, 1018
ErhI CCWWGG 2 cut(s) 258, 999
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FaqI GGGAC 3 cut(s) 190, 309, 926
FatI CATG 1 cut(s) 252
FauI CCCGC 4 cut(s) 176, 216, 822, 829
FblI GTMKAC 1 cut(s) 540
FokI GGATG 2 cut(s) 227, 781
FriOI GRGCYC 2 cut(s) 906, 1018
GsaI CCCAGC 2 cut(s) 590, 806
GsuI CTGGAG 2 cut(s) 293, 779
HaeII RGCGCY 2 cut(s) 164, 659
HaeIII GGCC 6 cut(s) 180, 395, 481, 927, 991, 1016
HapII CCGG 8 cut(s) 119, 154, 172, 193, 291, 495, 596, 929
HgaI GACGC 4 cut(s) 224, 283, 373, 446
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 5 cut(s) 69, 263, 521, 879, 980
HpaII CCGG 8 cut(s) 119, 154, 172, 193, 291, 495, 596, 929
HphI GGTGA 6 cut(s) 610, 622, 718, 724, 851, 899
Hpy166II GTNNAC 2 cut(s) 541, 747
Hpy188I TCNGA 2 cut(s) 526, 974
Hpy188III TCNNGA 3 cut(s) 145, 172, 326
Hpy8I GTNNAC 2 cut(s) 541, 747
Hpy99I CGWCG 7 cut(s) 290, 374, 440, 539, 542, 545, 548
HpyAV CCTTC 2 cut(s) 409, 893
HpyCH4IV ACGT 3 cut(s) 320, 546, 843
HpyCH4V TGCA 3 cut(s) 75, 167, 778
HpySE526I ACGT 3 cut(s) 320, 546, 843
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 171
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
KspI CCGCGG 3 cut(s) 105, 184, 280
Kzo9I GATC 6 cut(s) 141, 419, 483, 531, 714, 718
LmnI GCTCC 7 cut(s) 287, 681, 760, 816, 856, 948, 975
LweI GCATC 4 cut(s) 36, 479, 516, 573
MaeII ACGT 3 cut(s) 320, 546, 843
MaeIII GTNAC 3 cut(s) 839, 887, 1034
MalI GATC 6 cut(s) 143, 421, 485, 533, 716, 720
MbiI CCGCTC 2 cut(s) 456, 951
MboI GATC 6 cut(s) 141, 419, 483, 531, 714, 718
MboII GAAGA 3 cut(s) 289, 331, 1039
MflI RGATCY 2 cut(s) 141, 419
MhlI GDGCHC 6 cut(s) 191, 765, 861, 906, 998, 1018
MlyI GAGTC 5 cut(s) 63, 257, 515, 873, 974
MmeI TCCRAC 1 cut(s) 549
MreI CGCCGGCG 1 cut(s) 290
MroI TCCGGA 1 cut(s) 171
MroNI GCCGGC 1 cut(s) 290
MslI CAYNNNNRTG 2 cut(s) 251, 704
MspA1I CMGCKG 4 cut(s) 104, 183, 211, 279
MspI CCGG 8 cut(s) 119, 154, 172, 193, 291, 495, 596, 929
MspR9I CCNGG 7 cut(s) 155, 193, 478, 896, 924, 929, 967
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 4 cut(s) 478, 896, 924, 967
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 3 cut(s) 155, 193, 929
NdeII GATC 6 cut(s) 141, 419, 483, 531, 714, 718
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 9 cut(s) 188, 206, 283, 788, 869, 914, 971, 1016, 1017
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 3 cut(s) 839, 887, 1034
OliI CACNNNNGTG 1 cut(s) 704
PalAI GGCGCGCC 1 cut(s) 591
PauI GCGCGC 3 cut(s) 440, 466, 591
PcsI WCGNNNNNNNCGW 6 cut(s) 105, 540, 543, 579, 815, 840
PctI GAATGC 1 cut(s) 167
PdiI GCCGGC 1 cut(s) 292
Pfl23II CGTACG 2 cut(s) 499, 1020
PfoI TCCNGGA 1 cut(s) 153
PleI GAGTC 5 cut(s) 63, 257, 515, 873, 974
PmaCI CACGTG 1 cut(s) 321
PmlI CACGTG 1 cut(s) 321
PpsI GAGTC 5 cut(s) 63, 257, 515, 873, 974
Ppu21I YACGTR 1 cut(s) 321
PpuMI RGGWCCY 1 cut(s) 913
Psp5II RGGWCCY 1 cut(s) 913
Psp6I CCWGG 4 cut(s) 476, 894, 922, 965
PspCI CACGTG 1 cut(s) 321
PspFI CCCAGC 2 cut(s) 586, 802
PspGI CCWGG 4 cut(s) 476, 894, 922, 965
PspLI CGTACG 2 cut(s) 499, 1020
PspN4I GGNNCC 9 cut(s) 188, 206, 283, 788, 869, 914, 971, 1016, 1017
PspOMI GGGCCC 1 cut(s) 1014
PspPI GGNCC 5 cut(s) 204, 913, 926, 1014, 1015
PspPPI RGGWCCY 1 cut(s) 913
PsuI RGATCY 2 cut(s) 141, 419
PteI GCGCGC 3 cut(s) 440, 466, 591
RsaI GTAC 6 cut(s) 111, 427, 501, 602, 746, 1022
RsaNI GTAC 6 cut(s) 110, 426, 500, 601, 745, 1021
RseI CAYNNNNRTG 2 cut(s) 251, 704
SacII CCGCGG 3 cut(s) 105, 184, 280
SalI GTCGAC 1 cut(s) 539
Sau3AI GATC 6 cut(s) 141, 419, 483, 531, 714, 718
Sau96I GGNCC 5 cut(s) 204, 913, 926, 1014, 1015
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 5 cut(s) 63, 257, 515, 873, 974
ScrFI CCNGG 7 cut(s) 155, 193, 478, 896, 924, 929, 967
SduI GDGCHC 6 cut(s) 191, 765, 861, 906, 998, 1018
SfaNI GCATC 4 cut(s) 36, 479, 516, 573
SfcI CTRYAG 1 cut(s) 907
Sfr303I CCGCGG 3 cut(s) 105, 184, 280
SgrAI CRCCGGYG 1 cut(s) 290
SgrBI CCGCGG 3 cut(s) 105, 184, 280
SgrDI CGTCGACG 1 cut(s) 539
SgsI GGCGCGCC 1 cut(s) 591
SinI GGWCC 2 cut(s) 204, 913
SmiMI CAYNNNNRTG 2 cut(s) 251, 704
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
StyD4I CCNGG 7 cut(s) 153, 191, 476, 894, 922, 927, 965
StyI CCWWGG 2 cut(s) 258, 999
TaiI ACGT 3 cut(s) 323, 549, 846
TaqI TCGA 4 cut(s) 446, 519, 540, 717
TatI WGTACW 2 cut(s) 600, 744
TscAI CASTG 1 cut(s) 770
TseFI GTSAC 3 cut(s) 839, 887, 1034
Tsp45I GTSAC 3 cut(s) 839, 887, 1034
TspDTI ATGAA 1 cut(s) 337
TspGWI ACGGA 4 cut(s) 274, 292, 764, 891
TspRI CASTG 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 204, 913
XmiI GTMKAC 1 cut(s) 540
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.