Rorug04G0289700

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006288
Physical Location & Seq
Forward (+)
46428698 .. 46431641
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0289700.1

Sequence Viewer

Length: 1179 bp
ATGGATGGTAGACAAGAGCTGAGAAACAACACCACCGATCGTACTAGTCTTCCTCCCTCCTCCTCCTCCTCTGCACCGATGGCCAACTCAGCACTTTTCTCCGATCACGAGATTCCGATGATACCCAACAACACCTTCCCTTCACTCTCAAGCATCTTCGACTCAGAACCCGAAAGGGGTTATCTGGGTTTCATGGAGTTGCTCGGCAACACGGACTACGCTCCTGTGGTTGATTTCGGGACCCAAACGACGCCGTCTGACTCGTTGGTGACGATGATGATGCCACCTCAGCAGCAGCAGCAGCAGCAAACACAAGCGCTTCCTTCGCCGGTGTCGTCTACAGTGCCAGAGAGTGGGACTAACTCCGAGGCCTTGAACTCCAGCGCCAATACTGCTCCCACGACACCCAACTCGTCTTCGATCTCGTCCTCGTCTAATGAAGCTCATGCGGCGAATAATAATAATGAGGAGCAAACCACGACAAAAGCAGGAGATGAGGAAGAAGATGCTGACCAAGATCCGGACAAGACCCAGAAACAATTGAAACCCAAAAAGAAGAACCAGAAAAGGCAGAGGGAGCCGAGATTTGCGTTCATGACCAAGAGCGAGGTCGATAACCTAGACGACGGGTACAGATGGCGCAAGTACGGCCAAAAAGCTGTCAAGAACAGCCCTTATCCAAGGAGCTACTATCGTTGCACCACAGCAGGTTGCGGTGTGAAGAAGAGGGTGGAGAGGTCCTCCGACGACCCTTCGATTGTGGTGACGACTTACGAAGGCCAGCACACGCACCCGAGCCCGATCTCGCCGCGCGGCAGCATGGGGATGGCGCCGCTGCCGTCGGAGCTGTCCGGTCATTTGTTCACTGGGGCAGCAGGCTCAGGCTATGGTGTTCCTCATCACTATCAACATCAGCAGCAACAGCAACAGCAACAGCAACAGCATTTGCACTCTTATATATATAACTCTTCGCCTTCTTTGAACATTACTACTACCACCTCCTCAGCGCCATCCTATGGTTTCAACCCGGCGTCGTTTCCTGGTTTGTTTCAAGAGAGATATAATAACACTGGAGGAGGTCATTCCTCTAATTTGGCCGCTTCTAATTTGCTTAGAGACCACGGACTTCTTCAGGATATGCTGCCATCGCAGATTCGAAAAGAGACTAAGGAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

392

Amino Acids

42.97

Weight (kDa)

5.95

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 208 - 265 2.1e-28 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 698
AccB1I GGYRCC 1 cut(s) 829
AccB7I CCANNNNNTGG 2 cut(s) 353, 1016
AccI GTMKAC 2 cut(s) 10, 338
AccII CGCG 2 cut(s) 811, 813
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 6 cut(s) 449, 714, 809, 813, 833, 1098
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 3 cut(s) 81, 649, 1095
AcuI CTGAAG 1 cut(s) 1115
AcyI GRCGYC 3 cut(s) 251, 830, 1031
AfaI GTAC 3 cut(s) 43, 632, 647
AfeI AGCGCT 1 cut(s) 318
AfiI CCNNNNNNNGG 4 cut(s) 176, 353, 520, 1016
AgsI TTSAA 5 cut(s) 376, 544, 982, 1024, 1052
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 5 cut(s) 19, 443, 659, 687, 847
AluI AGCT 5 cut(s) 19, 443, 659, 687, 847
Alw26I GTCTC 2 cut(s) 1110, 1157
AlwI GGATC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 793
Aor13HI TCCGGA 1 cut(s) 520
Aor51HI AGCGCT 1 cut(s) 318
AoxI GGCC 5 cut(s) 81, 369, 649, 778, 1095
AspLEI GCGC 6 cut(s) 319, 386, 642, 813, 832, 1009
AspS9I GGNCC 2 cut(s) 240, 738
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 2 cut(s) 280, 775
AsuII TTCGAA 1 cut(s) 1156
AvaI CYCGRG 1 cut(s) 793
AvaII GGWCC 2 cut(s) 240, 738
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 1 cut(s) 800
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 41, 408
BbvCI CCTCAGC 2 cut(s) 288, 1003
BccI CCATC 5 cut(s) 73, 630, 820, 1018, 1153
BceAI ACGGC 3 cut(s) 238, 664, 823
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 1041
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 2 cut(s) 1110, 1157
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 2 cut(s) 45, 620
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 4 cut(s) 320, 387, 833, 1010
BfuAI ACCTGC 1 cut(s) 698
Bme1390I CCNGG 2 cut(s) 1028, 1041
Bme18I GGWCC 2 cut(s) 240, 738
BmeT110I CYCGRG 1 cut(s) 793
BmgT120I GGNCC 2 cut(s) 240, 738
BmiI GGNNCC 4 cut(s) 241, 242, 579, 831
BmrFI CCNGG 2 cut(s) 1028, 1041
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 3 cut(s) 162, 270, 496
BmuI ACTGGG 1 cut(s) 876
BpiI GAAGAC 2 cut(s) 41, 408
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 2 cut(s) 364, 1092
Bpu10I CCTNAGC 3 cut(s) 288, 880, 1003
Bpu14I TTCGAA 1 cut(s) 1156
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 1028
BsaHI GRCGYC 3 cut(s) 251, 830, 1031
BsaI GGTCTC 1 cut(s) 1110
BsaJI CCNNGG 3 cut(s) 366, 680, 1120
BsaWI WCCGGW 2 cut(s) 520, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 353, 520, 1016
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 871, 1075
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 1 cut(s) 1041
BseDI CCNNGG 3 cut(s) 366, 680, 1120
BseGI GGATG 3 cut(s) 10, 831, 1010
BseLI CCNNNNNNNGG 4 cut(s) 176, 353, 520, 1016
BseMII CTCAG 6 cut(s) 11, 102, 177, 302, 894, 1017
BseNI ACTGG 2 cut(s) 871, 1075
BseRI GAGGAG 7 cut(s) 49, 52, 55, 58, 482, 991, 1089
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 2 cut(s) 811, 813
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 5 cut(s) 83, 371, 651, 780, 1097
BshNI GGYRCC 1 cut(s) 829
BsiEI CGRYCG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 793
BsiSI CCGG 4 cut(s) 329, 521, 852, 1028
BslFI GGGAC 2 cut(s) 253, 370
BslI CCNNNNNNNGG 4 cut(s) 176, 353, 520, 1016
BsmAI GTCTC 2 cut(s) 1110, 1157
BsmFI GGGAC 2 cut(s) 253, 370
BsnI GGCC 5 cut(s) 83, 371, 651, 780, 1097
Bso31I GGTCTC 1 cut(s) 1110
BsoBI CYCGRG 1 cut(s) 793
Bsp119I TTCGAA 1 cut(s) 1156
Bsp1286I GDGCHC 1 cut(s) 800
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 5 cut(s) 37, 103, 420, 517, 801
BspACI CCGC 6 cut(s) 449, 714, 809, 813, 833, 1098
BspANI GGCC 5 cut(s) 83, 371, 651, 780, 1097
BspCNI CTCAG 6 cut(s) 12, 101, 176, 301, 893, 1016
BspEI TCCGGA 1 cut(s) 520
BspFNI CGCG 2 cut(s) 811, 813
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 4 cut(s) 241, 242, 579, 831
BspMI ACCTGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 1156
BspT107I GGYRCC 1 cut(s) 829
BspTNI GGTCTC 1 cut(s) 1110
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 2 cut(s) 871, 1075
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 366, 680, 1120
BssMI GATC 5 cut(s) 37, 103, 420, 517, 801
BssNI GRCGYC 3 cut(s) 251, 830, 1031
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 680
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 1041
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 719, 973
BstACI GRCGYC 3 cut(s) 251, 830, 1031
BstBI TTCGAA 1 cut(s) 1156
BstC8I GCNNGC 2 cut(s) 782, 877
BstDEI CTNAG 8 cut(s) 20, 88, 163, 288, 880, 1003, 1112, 1167
BstDSI CCRYGG 1 cut(s) 1120
BstF5I GGATG 3 cut(s) 10, 831, 1010
BstFNI CGCG 2 cut(s) 811, 813
BstH2I RGCGCY 4 cut(s) 320, 387, 833, 1010
BstHHI GCGC 6 cut(s) 319, 386, 642, 813, 832, 1009
BstKTI GATC 5 cut(s) 40, 106, 423, 520, 804
BstMAI GTCTC 2 cut(s) 1110, 1157
BstMBI GATC 5 cut(s) 37, 103, 420, 517, 801
BstMCI CGRYCG 1 cut(s) 40
BstNI CCWGG 1 cut(s) 1041
BstSCI CCNGG 2 cut(s) 1026, 1039
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 2 cut(s) 811, 813
BstV2I GAAGAC 2 cut(s) 41, 408
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 5 cut(s) 83, 371, 651, 780, 1097
BtgI CCRYGG 1 cut(s) 1120
BtgZI GCGATG 1 cut(s) 1131
BtsCI GGATG 3 cut(s) 10, 831, 1010
BtsIMutI CAGTG 3 cut(s) 348, 864, 1068
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 2 cut(s) 782, 877
CciI TCATGA 1 cut(s) 594
CfoI GCGC 6 cut(s) 319, 386, 642, 813, 832, 1009
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 240, 738
CseI GACGC 2 cut(s) 259, 1020
Csp6I GTAC 3 cut(s) 42, 631, 646
CviAII CATG 4 cut(s) 193, 446, 595, 820
CviQI GTAC 3 cut(s) 42, 631, 646
DdeI CTNAG 8 cut(s) 20, 88, 163, 288, 880, 1003, 1112, 1167
DinI GGCGCC 1 cut(s) 831
DpnI GATC 5 cut(s) 39, 105, 422, 519, 803
DpnII GATC 5 cut(s) 37, 103, 420, 517, 801
EaeI YGGCCR 3 cut(s) 81, 649, 1095
Eam1104I CTCTTC 2 cut(s) 719, 973
EarI CTCTTC 2 cut(s) 719, 973
Eco130I CCWWGG 1 cut(s) 680
Eco147I AGGCCT 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 800
Eco31I GGTCTC 1 cut(s) 1110
Eco47I GGWCC 2 cut(s) 240, 738
Eco47III AGCGCT 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 1115
Eco88I CYCGRG 1 cut(s) 793
EcoO109I RGGNCCY 2 cut(s) 240, 738
EcoRII CCWGG 1 cut(s) 1039
EcoT14I CCWWGG 1 cut(s) 680
EcoT38I GRGCYC 1 cut(s) 800
EgeI GGCGCC 1 cut(s) 831
EheI GGCGCC 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 4 cut(s) 196, 449, 598, 823
FaqI GGGAC 2 cut(s) 253, 370
FatI CATG 4 cut(s) 192, 445, 594, 819
FblI GTMKAC 2 cut(s) 10, 338
FokI GGATG 3 cut(s) 17, 838, 997
FriOI GRGCYC 1 cut(s) 800
FspBI CTAG 2 cut(s) 45, 620
GlaI GCGC 6 cut(s) 318, 385, 641, 812, 831, 1008
GsuI CTGGAG 2 cut(s) 364, 1092
HaeII RGCGCY 4 cut(s) 320, 387, 833, 1010
HaeIII GGCC 5 cut(s) 83, 371, 651, 780, 1097
HapII CCGG 4 cut(s) 329, 521, 852, 1028
HgaI GACGC 2 cut(s) 259, 1020
HhaI GCGC 6 cut(s) 319, 386, 642, 813, 832, 1009
Hin1I GRCGYC 3 cut(s) 251, 830, 1031
Hin1II CATG 4 cut(s) 196, 449, 598, 823
Hin6I GCGC 6 cut(s) 317, 384, 640, 811, 830, 1007
HinP1I GCGC 6 cut(s) 317, 384, 640, 811, 830, 1007
HinfI GANTC 4 cut(s) 112, 161, 260, 1153
HpaII CCGG 4 cut(s) 329, 521, 852, 1028
HphI GGTGA 2 cut(s) 280, 775
Hpy166II GTNNAC 3 cut(s) 11, 339, 864
Hpy188I TCNGA 7 cut(s) 103, 117, 166, 259, 367, 745, 844
Hpy188III TCNNGA 7 cut(s) 107, 238, 521, 595, 664, 1052, 1133
Hpy8I GTNNAC 3 cut(s) 11, 339, 864
Hpy99I CGWCG 5 cut(s) 253, 629, 749, 844, 1036
HpyAV CCTTC 7 cut(s) 145, 150, 333, 762, 770, 984, 1166
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 74, 699, 949
HpyF3I CTNAG 8 cut(s) 20, 88, 163, 288, 880, 1003, 1112, 1167
Hsp92I GRCGYC 3 cut(s) 251, 830, 1031
Hsp92II CATG 4 cut(s) 196, 449, 598, 823
HspAI GCGC 6 cut(s) 317, 384, 640, 811, 830, 1007
KasI GGCGCC 1 cut(s) 829
KflI GGGWCCC 1 cut(s) 240
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 37, 103, 420, 517, 801
LmnI GCTCC 6 cut(s) 226, 400, 469, 577, 684, 844
LweI GCATC 3 cut(s) 162, 270, 496
MaeI CTAG 2 cut(s) 45, 620
MaeIII GTNAC 2 cut(s) 268, 763
MalI GATC 5 cut(s) 39, 105, 422, 519, 803
MboI GATC 5 cut(s) 37, 103, 420, 517, 801
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 800
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 3 cut(s) 539, 1090, 1105
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 830
MlyI GAGTC 2 cut(s) 155, 254
MmeI TCCRAC 2 cut(s) 768, 822
Mox20I TGGCCA 1 cut(s) 83
MroI TCCGGA 1 cut(s) 520
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 824
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 835
MspI CCGG 4 cut(s) 329, 521, 852, 1028
MspR9I CCNGG 2 cut(s) 1028, 1041
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 1041
MvnI CGCG 2 cut(s) 811, 813
NarI GGCGCC 1 cut(s) 830
NciI CCSGG 1 cut(s) 1028
NdeII GATC 5 cut(s) 37, 103, 420, 517, 801
NlaIII CATG 4 cut(s) 196, 449, 598, 823
NlaIV GGNNCC 4 cut(s) 241, 242, 579, 831
NmeAIII GCCGAG 2 cut(s) 183, 606
NmuCI GTSAC 2 cut(s) 268, 763
NspV TTCGAA 1 cut(s) 1156
PagI TCATGA 1 cut(s) 594
PceI AGGCCT 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 332
PfeI GAWTC 2 cut(s) 112, 1153
PflFI GACNNNGTC 1 cut(s) 253
PflMI CCANNNNNTGG 2 cut(s) 353, 1016
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 2 cut(s) 155, 254
PluTI GGCGCC 1 cut(s) 833
PpsI GAGTC 2 cut(s) 155, 254
PpuMI RGGWCCY 2 cut(s) 240, 738
Psp5II RGGWCCY 2 cut(s) 240, 738
Psp6I CCWGG 1 cut(s) 1039
PspGI CCWGG 1 cut(s) 1039
PspN4I GGNNCC 4 cut(s) 241, 242, 579, 831
PspPI GGNCC 2 cut(s) 240, 738
PspPPI RGGWCCY 2 cut(s) 240, 738
PsuI RGATCY 1 cut(s) 517
PsyI GACNNNGTC 1 cut(s) 253
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 3 cut(s) 43, 632, 647
RsaNI GTAC 3 cut(s) 42, 631, 646
RseI CAYNNNNRTG 1 cut(s) 824
Sau3AI GATC 5 cut(s) 37, 103, 420, 517, 801
Sau96I GGNCC 2 cut(s) 240, 738
SchI GAGTC 2 cut(s) 155, 254
ScrFI CCNGG 2 cut(s) 1028, 1041
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 3 cut(s) 162, 270, 496
SfcI CTRYAG 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 831
SfuI TTCGAA 1 cut(s) 1156
SgrAI CRCCGGYG 1 cut(s) 328
SinI GGWCC 2 cut(s) 240, 738
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 3 cut(s) 539, 1090, 1105
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 6 cut(s) 449, 714, 809, 813, 833, 1098
SspDI GGCGCC 1 cut(s) 829
SspMI CTAG 2 cut(s) 45, 620
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 1026, 1039
StyI CCWWGG 1 cut(s) 680
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 5 cut(s) 159, 419, 612, 755, 1156
TasI AATT 3 cut(s) 539, 1090, 1105
TauI GCSGC 5 cut(s) 452, 811, 816, 835, 1100
TfiI GAWTC 2 cut(s) 112, 1153
TscAI CASTG 3 cut(s) 348, 871, 1075
TseFI GTSAC 2 cut(s) 268, 763
Tsp45I GTSAC 2 cut(s) 268, 763
TspDTI ATGAA 3 cut(s) 181, 453, 583
TspGWI ACGGA 2 cut(s) 227, 1137
TspRI CASTG 3 cut(s) 348, 871, 1075
Tth111I GACNNNGTC 1 cut(s) 253
Van91I CCANNNNNTGG 2 cut(s) 353, 1016
VpaK11BI GGWCC 2 cut(s) 240, 738
XmiI GTMKAC 2 cut(s) 10, 338
XspI CTAG 2 cut(s) 45, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.