Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006288

Physical Location & Seq

Genomic Coordinates Reverse (-)

4528485 .. 4530222

Gene Structure 1738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTCTTCTCTGCGTTTGCGTTTATGTCTTCTTCTACTCTTACCTATCACAATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCGCGTTTCGTGAAGCTCCGGCGTTTCGAAACGGCAGAGAATGCTCCAAAACGACATGGATACCTTCGGATCACGAACACAACCCATCAATCATCCACATCGCTATGACTCTCGACGCAATTTACCTCCGTGGCTCAGTCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACATCGTTTTCCACTTCATCGCCACTCACCGTCGCAGCGCCGATCTCCGCCGCATAATCTCCTCAACATTCCCATACCTAACCTACCACATTTACCATTTTGACCCTAACCTCGTCCGCAGCAAAATATCTTCCTCTATTCGTCGTGCTTTAGACCAACCGTTAAACTACGCTCGGATCTACCTCGCCGATCTCCTCCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTAGTCGTCGATGACGTGGCTAAACTCTGGAGAATCGATCTACGTCGGCACGTCGTCGGAGCTCCGGAGTACTGTCACGCGAATTTCACTAACTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTACAAATCGGCGTTGAAAGATAGGAAACCGTGTTATTTCAACACCGGAGTGATGGTGATTGATCTCGGAAAATGGAGAGAAAGGAGAGTCACGGTGAAGCTAGAGACATGGATGAGGATTCAAAAACGACATCGTATTTACGAATTGGGATCTTTGCCTCCGTTTCTGCTCGTTTTCGCCGGAGATGTTGAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAAGGACTTTGCCGGAATTTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCATGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGATTTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

345

Amino Acids

39.85

Weight (kDa)

9.49

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	61 - 317	2.5e-54	Glycosyl transferase family 8
Glyco_transf_24	PF18404	121 - 245	3.5e-12	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13250
fragaria_vesca	FvH4_4g28060
malus_domestica	MD13G1046300.v1.1 MD16G1048100.v1.1
prunus_persica	Prupe.1G305600_v2.0.a1
pyrus_communis	pycom13g04060 pycom13g14600 pycom16g04200
rosa_chinensis	RchiOBHm_Chr4g0387681 RchiOBHm_Chr4g0435811
rosa_laevigata	RLG00000006557
rosa_multiflora	Rmu_co8360435.1_g000001 Rmu_sc0010838.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361740 Rroxscaffold_5G00376990
rosa_rugosa	Rorug02G0138300 Rorug04G0289700 Rorug05G0129600
rosa_samantha	Rh2BG035000 Rh2DG292100 Rh4AG119700 Rh4AG344000 Rh4CG367300 Rh4DG346800 Rh6BG278600 Rh6CG170100
rosa_wichuraiana	Rw4G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	969
AccBSI	CCGCTC	1 cut(s)	927
AccII	CGCG	3 cut(s)	89, 483, 587
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	7 cut(s)	87, 316, 319, 385, 478, 481, 927
AclWI	GGATC	3 cut(s)	162, 452, 790
AcsI	RAATTY	2 cut(s)	589, 889
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	612, 649, 673, 755
AjiI	CACGTC	2 cut(s)	523, 559
AjnI	CCWGG	1 cut(s)	898
AleI	CACNNNNGTG	1 cut(s)	680
AluBI	AGCT	5 cut(s)	57, 101, 569, 733, 1035
AluI	AGCT	5 cut(s)	57, 101, 569, 733, 1035
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	2 cut(s)	731, 955
AlwI	GGATC	3 cut(s)	162, 452, 790
Ama87I	CYCGRG	1 cut(s)	958
Aor13HI	TCCGGA	1 cut(s)	571
ApeKI	GCWGC	3 cut(s)	57, 303, 387
ApoI	RAATTY	2 cut(s)	589, 889
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	902
AsuHPI	GGTGA	6 cut(s)	287, 700, 739, 875, 919, 1008
AsuII	TTCGAA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	1 cut(s)	902
BanII	GRGCYC	2 cut(s)	571, 994
BbsI	GAAGAC	2 cut(s)	20, 226
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	44, 315, 399
BccI	CCATC	2 cut(s)	178, 679
BceAI	ACGGC	2 cut(s)	133, 458
BciT130I	CCWGG	1 cut(s)	900
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	731, 955
BfaI	CTAG	1 cut(s)	734
BfoI	RGCGCY	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	58, 304, 319, 388, 481
BlsI	GCNGC	5 cut(s)	59, 305, 320, 389, 482
BmcAI	AGTACT	1 cut(s)	578
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	1 cut(s)	902
BmeT110I	CYCGRG	1 cut(s)	958
BmgBI	CACGTC	2 cut(s)	523, 559
BmgT120I	GGNCC	1 cut(s)	902
BmiI	GGNNCC	1 cut(s)	993
BmrFI	CCNGG	1 cut(s)	900
BmsI	GCATC	1 cut(s)	904
BpiI	GAAGAC	2 cut(s)	20, 226
BpmI	CTGGAG	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	947
Bpu14I	TTCGAA	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	214, 941
BsaWI	WCCGGW	3 cut(s)	571, 677, 904
BsaXI	ACNNNNNCTCC	6 cut(s)	482, 512, 672, 702, 824, 854
Bse118I	RCCGGY	2 cut(s)	227, 826
BseAI	TCCGGA	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	900
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	214, 941
BseGI	GGATG	3 cut(s)	177, 750, 895
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	2 cut(s)	319, 452
BseXI	GCAGC	3 cut(s)	44, 315, 399
Bsh1236I	CGCG	3 cut(s)	89, 483, 587
Bsh1285I	CGRYCG	1 cut(s)	968
BshVI	ATCGAT	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	968
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	958
BsiSI	CCGG	8 cut(s)	104, 228, 572, 678, 813, 827, 886, 905
BsmAI	GTCTC	2 cut(s)	731, 955
BsmBI	CGTCTC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	958
Bsp119I	TTCGAA	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	571, 994
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
Bsp19I	CCATGG	1 cut(s)	941
BspACI	CCGC	7 cut(s)	87, 316, 319, 385, 478, 481, 927
BspCNI	CTCAG	1 cut(s)	233
BspDI	ATCGAT	1 cut(s)	543
BspEI	TCCGGA	1 cut(s)	571
BspFNI	CGCG	3 cut(s)	89, 483, 587
BspLI	GGNNCC	1 cut(s)	993
BspPI	GGATC	3 cut(s)	162, 452, 790
BspT104I	TTCGAA	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	927
BsrFI	RCCGGY	2 cut(s)	227, 826
BssAI	RCCGGY	2 cut(s)	227, 826
BssECI	CCNNGG	2 cut(s)	214, 941
BssMI	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	941
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	8 cut(s)	67, 299, 429, 581, 663, 727, 969, 1020
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	220, 947
BstDSI	CCRYGG	2 cut(s)	214, 941
BstF5I	GGATG	3 cut(s)	177, 750, 895
BstFNI	CGCG	3 cut(s)	89, 483, 587
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	9 cut(s)	157, 313, 447, 460, 505, 547, 697, 785, 1026
BstMAI	GTCTC	2 cut(s)	731, 955
BstMBI	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
BstMCI	CGRYCG	1 cut(s)	968
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 832
BstNI	CCWGG	1 cut(s)	900
BstSCI	CCNGG	1 cut(s)	898
BstUI	CGCG	3 cut(s)	89, 483, 587
BstV1I	GCAGC	3 cut(s)	44, 315, 399
BstV2I	GAAGAC	2 cut(s)	20, 226
BstX2I	RGATCY	2 cut(s)	444, 782
BstYI	RGATCY	2 cut(s)	444, 782
Bsu15I	ATCGAT	1 cut(s)	543
BsuI	GTATCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	2 cut(s)	214, 941
BtgZI	GCGATG	2 cut(s)	169, 271
BtrI	CACGTC	2 cut(s)	523, 559
BtsCI	GGATG	3 cut(s)	177, 750, 895
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	2 cut(s)	227, 826
Cfr13I	GGNCC	1 cut(s)	902
ClaI	ATCGAT	1 cut(s)	543
CseI	GACGC	3 cut(s)	49, 209, 220
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	4 cut(s)	141, 741, 851, 942
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	2 cut(s)	220, 947
DpnI	GATC	9 cut(s)	156, 312, 446, 459, 504, 546, 696, 784, 1025
DpnII	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
DrdI	GACNNNNNNGTC	1 cut(s)	969
DseDI	GACNNNNNNGTC	1 cut(s)	969
EciI	GGCGGA	2 cut(s)	305, 467
Ecl136II	GAGCTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	941
Eco24I	GRGCYC	2 cut(s)	571, 994
Eco47I	GGWCC	1 cut(s)	902
Eco53kI	GAGCTC	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	958
EcoICRI	GAGCTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	941
EcoT38I	GRGCYC	2 cut(s)	571, 994
ErhI	CCWWGG	1 cut(s)	941
Esp3I	CGTCTC	1 cut(s)	955
FaeI	CATG	4 cut(s)	144, 744, 854, 945
FatI	CATG	4 cut(s)	140, 740, 850, 941
FauI	CCCGC	2 cut(s)	94, 920
Fnu4HI	GCNGC	5 cut(s)	58, 304, 319, 388, 481
FokI	GGATG	3 cut(s)	164, 757, 882
FriOI	GRGCYC	2 cut(s)	571, 994
Fsp4HI	GCNGC	5 cut(s)	58, 304, 319, 388, 481
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	5 cut(s)	58, 304, 319, 388, 481
GsuI	CTGGAG	1 cut(s)	556
HaeII	RGCGCY	1 cut(s)	309
HapII	CCGG	8 cut(s)	104, 228, 572, 678, 813, 827, 886, 905
HgaI	GACGC	3 cut(s)	49, 209, 220
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	144, 744, 854, 945
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HpaII	CCGG	8 cut(s)	104, 228, 572, 678, 813, 827, 886, 905
HphI	GGTGA	6 cut(s)	287, 700, 739, 875, 919, 1008
Hpy188I	TCNGA	6 cut(s)	154, 444, 502, 566, 701, 1030
Hpy188III	TCNNGA	8 cut(s)	95, 158, 197, 263, 535, 572, 612, 960
Hpy99I	CGWCG	7 cut(s)	203, 303, 414, 518, 555, 563, 566
HpyAV	CCTTC	2 cut(s)	159, 869
HpyCH4III	ACNGT	8 cut(s)	67, 299, 429, 581, 663, 727, 969, 1020
HpyCH4IV	ACGT	3 cut(s)	522, 550, 558
HpyCH4V	TGCA	2 cut(s)	895, 919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 832
HpyF3I	CTNAG	2 cut(s)	220, 947
HpySE526I	ACGT	3 cut(s)	522, 550, 558
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	144, 744, 854, 945
HspAI	GCGC	1 cut(s)	306
Kpn2I	TCCGGA	1 cut(s)	571
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
LmnI	GCTCC	7 cut(s)	106, 134, 566, 574, 832, 924, 997
Lsp1109I	GCAGC	3 cut(s)	44, 315, 399
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	1 cut(s)	734
MaeII	ACGT	3 cut(s)	522, 550, 558
MaeIII	GTNAC	5 cut(s)	61, 67, 581, 632, 721
MalI	GATC	9 cut(s)	156, 312, 446, 459, 504, 546, 696, 784, 1025
MbiI	CCGCTC	1 cut(s)	927
MboI	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
MboII	GAAGA	4 cut(s)	20, 23, 226, 390
MflI	RGATCY	2 cut(s)	444, 782
MhlI	GDGCHC	2 cut(s)	571, 994
MluCI	AATT	5 cut(s)	51, 204, 589, 776, 889
MlyI	GAGTC	5 cut(s)	187, 491, 634, 729, 950
MmeI	TCCRAC	3 cut(s)	271, 544, 957
MnlI	CCTC	9 cut(s)	92, 221, 340, 389, 412, 461, 473, 741, 801
MreI	CGCCGGCG	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	571
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	1 cut(s)	431
MslI	CAYNNNNRTG	2 cut(s)	188, 680
MspI	CCGG	8 cut(s)	104, 228, 572, 678, 813, 827, 886, 905
MspR9I	CCNGG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	900
MvnI	CGCG	3 cut(s)	89, 483, 587
MwoI	GCNNNNNNNGC	2 cut(s)	126, 832
NaeI	GCCGGC	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	941
NdeII	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	144, 744, 854, 945
NlaIV	GGNNCC	1 cut(s)	993
NmuCI	GTSAC	4 cut(s)	61, 67, 581, 721
NspV	TTCGAA	1 cut(s)	112
OliI	CACNNNNGTG	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	3 cut(s)	513, 519, 965
PctI	GAATGC	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	5 cut(s)	540, 615, 751, 844, 980
PflFI	GACNNNGTC	1 cut(s)	969
PkrI	GCNGC	5 cut(s)	59, 305, 320, 389, 482
PleI	GAGTC	5 cut(s)	187, 491, 633, 728, 950
PpsI	GAGTC	5 cut(s)	187, 491, 633, 728, 950
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	1 cut(s)	993
PspPI	GGNCC	1 cut(s)	902
PsuI	RGATCY	2 cut(s)	444, 782
PsyI	GACNNNGTC	1 cut(s)	969
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	2 cut(s)	188, 680
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	5 cut(s)	58, 304, 319, 388, 481
Sau3AI	GATC	9 cut(s)	154, 310, 444, 457, 502, 544, 694, 782, 1023
Sau96I	GGNCC	1 cut(s)	902
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	5 cut(s)	187, 491, 634, 729, 950
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	2 cut(s)	571, 994
SfaNI	GCATC	1 cut(s)	904
Sfr274I	CTCGAG	1 cut(s)	958
SfuI	TTCGAA	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	902
SlaI	CTCGAG	1 cut(s)	958
SmiMI	CAYNNNNRTG	2 cut(s)	188, 680
SmlI	CTYRAG	1 cut(s)	958
SmoI	CTYRAG	1 cut(s)	958
Sse9I	AATT	5 cut(s)	51, 204, 589, 776, 889
SsiI	CCGC	7 cut(s)	87, 316, 319, 385, 478, 481, 927
SspMI	CTAG	1 cut(s)	734
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	941
TaaI	ACNGT	8 cut(s)	67, 299, 429, 581, 663, 727, 969, 1020
TaiI	ACGT	3 cut(s)	525, 553, 561
TaqI	TCGA	7 cut(s)	112, 198, 495, 516, 543, 623, 959
TasI	AATT	5 cut(s)	51, 204, 589, 776, 889
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	2 cut(s)	321, 483
TfiI	GAWTC	5 cut(s)	540, 615, 751, 844, 980
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	4 cut(s)	61, 67, 581, 721
TseI	GCWGC	3 cut(s)	57, 303, 387
Tsp45I	GTSAC	4 cut(s)	61, 67, 581, 721
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	4 cut(s)	203, 229, 783, 963
TspRI	CASTG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	2 cut(s)	589, 889
XhoI	CTCGAG	1 cut(s)	958
XspI	CTAG	1 cut(s)	734
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.