Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006288

Physical Location & Seq

Genomic Coordinates Reverse (-)

34387352 .. 34389828

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACCCTGGACACCACCATCGGCCTATTCGATGTCCTCCATCACGCCAAGTATCCCGATAACACTGTGTTCAACCTCATCACTACGCACCATCGCTGGGACGACCTCCACCACTTCGACTGTAACCTAGTGAAGGGCAAGATCTCATACTCGATTCAGCGGGCGTTGACCAGCCTCTCAGCTATGCGCGAATCCAGCTGCCTAATCTATGCTATTGGCGCTTTCGCTATTGTTGAAATGCTATTTAGCTCTAGTCTTCTTGCCATTGTTGGAGTTGGTGAAGAGCCATCTTTATCTCCGCGAAAAGAGTGTAACCTATATAATAATGGATGGAGACTTGGTTTGCCCTGCAAAGATGGGAAGATCTGTAGAGGTTGGAGTATGAGCCAGTATGAGACGTTTGAAAGCTGCAATGTTTTCTCCAGGTGCTTTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

146

Amino Acids

16.53

Weight (kDa)

6.28

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13250
fragaria_vesca	FvH4_4g28060
malus_domestica	MD13G1046300.v1.1 MD16G1048100.v1.1
prunus_persica	Prupe.1G305600_v2.0.a1
pyrus_communis	pycom13g04060 pycom13g14600 pycom16g04200
rosa_chinensis	RchiOBHm_Chr4g0387681 RchiOBHm_Chr4g0435811
rosa_laevigata	RLG00000006557
rosa_multiflora	Rmu_co8360435.1_g000001 Rmu_sc0010838.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361740 Rroxscaffold_5G00376990
rosa_rugosa	Rorug02G0138300 Rorug04G0289700 Rorug05G0129600
rosa_samantha	Rh2BG035000 Rh2DG292100 Rh4AG119700 Rh4AG344000 Rh4CG367300 Rh4DG346800 Rh6BG278600 Rh6CG170100
rosa_wichuraiana	Rw4G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	189, 301
AciI	CCGC	2 cut(s)	160, 299
AfiI	CCNNNNNNNGG	2 cut(s)	97, 133
AgsI	TTSAA	4 cut(s)	73, 236, 404, 434
AjnI	CCWGG	2 cut(s)	6, 422
AluBI	AGCT	4 cut(s)	182, 198, 249, 408
AluI	AGCT	4 cut(s)	182, 198, 249, 408
Alw26I	GTCTC	2 cut(s)	328, 389
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	198, 408
AspLEI	GCGC	2 cut(s)	189, 221
AsuHPI	GGTGA	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	185, 395
BccI	CCATC	6 cut(s)	26, 48, 99, 295, 324, 350
BciT130I	CCWGG	2 cut(s)	8, 424
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	328, 389
BfaI	CTAG	2 cut(s)	128, 252
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	63
BglII	AGATCT	2 cut(s)	141, 363
BisI	GCNGC	2 cut(s)	199, 409
BlsI	GCNGC	2 cut(s)	200, 410
Bme1390I	CCNGG	2 cut(s)	8, 424
BmrFI	CCNGG	2 cut(s)	8, 424
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 133
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	8, 424
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	97, 133
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	185, 395
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	189, 301
BshFI	GGCC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	97, 133
BsmAI	GTCTC	2 cut(s)	328, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	141, 363
BspACI	CCGC	2 cut(s)	160, 299
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	2 cut(s)	189, 301
BspQI	GCTCTTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	141, 363
Bst2UI	CCWGG	2 cut(s)	8, 424
Bst4CI	ACNGT	2 cut(s)	67, 122
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	2 cut(s)	189, 301
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	189, 221
BstKTI	GATC	2 cut(s)	144, 366
BstMAI	GTCTC	2 cut(s)	328, 389
BstMBI	GATC	2 cut(s)	141, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 218
BstNI	CCWGG	2 cut(s)	8, 424
BstSCI	CCNGG	2 cut(s)	6, 422
BstSFI	CTRYAG	1 cut(s)	367
BstUI	CGCG	2 cut(s)	189, 301
BstV1I	GCAGC	2 cut(s)	185, 395
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	141, 363
BstYI	RGATCY	2 cut(s)	141, 363
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	2 cut(s)	189, 221
CviJI	RGCY	8 cut(s)	24, 174, 182, 198, 249, 286, 387, 408
CviKI_1	RGCY	8 cut(s)	24, 174, 182, 198, 249, 286, 387, 408
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	2 cut(s)	143, 365
DpnII	GATC	2 cut(s)	141, 363
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	6, 422
Esp3I	CGTCTC	1 cut(s)	389
FaiI	YATR	7 cut(s)	148, 185, 210, 319, 321, 383, 393
FaqI	GGGAC	1 cut(s)	113
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	199, 409
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	199, 409
FspBI	CTAG	2 cut(s)	128, 252
GlaI	GCGC	2 cut(s)	188, 220
GluI	GCNGC	2 cut(s)	199, 409
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	189, 221
Hin6I	GCGC	2 cut(s)	187, 219
HinP1I	GCGC	2 cut(s)	187, 219
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	154, 191
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	67, 122
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	351, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 218
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	1 cut(s)	398
HspAI	GCGC	2 cut(s)	187, 219
Kzo9I	GATC	2 cut(s)	141, 363
LguI	GCTCTTC	1 cut(s)	276
LpnPI	CCDG	8 cut(s)	20, 82, 184, 208, 361, 401, 409, 436
Lsp1109I	GCAGC	2 cut(s)	185, 395
MaeI	CTAG	2 cut(s)	128, 252
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	122, 311
MalI	GATC	2 cut(s)	143, 365
MboI	GATC	2 cut(s)	141, 363
MboII	GAAGA	3 cut(s)	248, 293, 373
MflI	RGATCY	2 cut(s)	141, 363
MmeI	TCCRAC	2 cut(s)	250, 356
MnlI	CCTC	5 cut(s)	47, 86, 116, 185, 365
MseI	TTAA	1 cut(s)	439
MspA1I	CMGCKG	2 cut(s)	160, 198
MspR9I	CCNGG	2 cut(s)	8, 424
MvaI	CCWGG	2 cut(s)	8, 424
MvnI	CGCG	2 cut(s)	189, 301
MwoI	GCNNNNNNNGC	2 cut(s)	195, 218
NdeII	GATC	2 cut(s)	141, 363
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	154, 191
PkrI	GCNGC	2 cut(s)	200, 410
Psp6I	CCWGG	2 cut(s)	6, 422
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	2 cut(s)	6, 422
PsuI	RGATCY	2 cut(s)	141, 363
PvuII	CAGCTG	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	2 cut(s)	199, 409
Sau3AI	GATC	2 cut(s)	141, 363
ScrFI	CCNGG	2 cut(s)	8, 424
SfcI	CTRYAG	1 cut(s)	367
SsiI	CCGC	2 cut(s)	160, 299
SspMI	CTAG	2 cut(s)	128, 252
StyD4I	CCNGG	2 cut(s)	6, 422
TaaI	ACNGT	2 cut(s)	67, 122
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	3 cut(s)	30, 117, 152
TfiI	GAWTC	2 cut(s)	154, 191
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	2 cut(s)	198, 408
TspRI	CASTG	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	128, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.