RLG00000006557

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
8466109 .. 8467508
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006557

Sequence Viewer

Length: 1056 bp
ATGCCCCCAAATCATCACCGCCGACTCTGCACGTTCCTCCTCGTCCTCGCCGCGGCCGTACATTTTCCTGGGGAAACCGCCGCCGTGGAGCTCCCGAAGTTCCGGGAAGCGCCTGCATTCCGGAATGGCCGCGGGTGCCCCCGGACGGCGTGGTCCTCGCTGGACGCGCACTCCCACAACCCCTCCATCATCCACATCGCCATGACCTTGGACTCCACCTACCTCCGCGGCTCCGTCGCCGGCGTCTTCTCCGTCCTCCAGCACGCCACGTGTCCCGAGAACATCGTCTTCCACTTCATCTCCACGCGCCACCGCCGCGACGACCTCCGCCGCGTCATCACCGCCACCTTCCCCTACCTCAAGTTCCGCCTCTACCACTTCGACTGCAACCTCGTCAAGGGCAAGATCTCGTACTCGGTGCGACGCGCGCTCGACCAGCCGCTTAACTACGCGCGCATCTACCTCGCCGATCTCCTCCCCTCCGGCGTACGCCGCATCATCTACTTCGACTCCGACCTGATCGTCGTCGACGACGTGGCGAAGCTCTGGCGCATCAACCTCGGGCGGCGCGTGCTGGGCGCGCCGGAGTACTGCCACGCGAACTTCACCAACTACTTCACCCCGAAGTTCTGGTCAAACGCGGCGCTGGCGGCGGAGTTCTCGGGGCGGAGCGCGTGCTATTTCAACACGGGGGTGATGGTGATCGATCTGTGGAAATGGAGGGAGGGCAAGTACACGGAGAAGCTGGAGCACTGGATGAGCGTGCAGAAACGGCACCGTATTTACGAGCTGGGGTCGCTGCCGCCGTTTCTGTTGGTTTTCGCGGGTGACGTGGAGGGGGTGGAGCACAGGTGGAACCAGCACGGACTCGGCGGTGACAACCTGGAAGGGCTCTGTAGGGACCTCCACCCGGGCCCGGTCAGCCTCCTCCATTGGAGCGTGGTTGGTGAAGATTCGGAATTCGATGGGGGTGCAACTGTGCAGGACTACAAGATTGAGGCTTTTTGGGTTTTGGTTTTAGTGAAGGTTATAGATAGCGGAATAGTGGGTGTATGA

Protein Analysis

352

Amino Acids

39.89

Weight (kDa)

8.62

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 65 - 313 2.5e-47 Glycosyl transferase family 8
Glyco_transf_24 PF18404 125 - 250 2.3e-08 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 151, 521
AccB1I GGYRCC 2 cut(s) 135, 774
AccI GTMKAC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 120
AcoI YGGCCR 2 cut(s) 54, 127
AcsI RAATTY 1 cut(s) 959
AcvI CACGTG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 5 cut(s) 60, 413, 489, 590, 734
AfiI CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 1 cut(s) 685
AjiI CACGTC 2 cut(s) 535, 832
AjnI CCWGG 2 cut(s) 67, 882
AleI CACNNNNGTG 1 cut(s) 692
AluBI AGCT 4 cut(s) 91, 544, 745, 790
AluI AGCT 4 cut(s) 91, 544, 745, 790
Alw21I GWGCWC 3 cut(s) 93, 753, 849
Ama87I CYCGRG 4 cut(s) 275, 560, 661, 910
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 3 cut(s) 54, 127, 913
ApaI GGGCCC 1 cut(s) 917
ApeKI GCWGC 1 cut(s) 799
ApoI RAATTY 1 cut(s) 959
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AscI GGCGCGCC 1 cut(s) 579
AspS9I GGNCC 4 cut(s) 153, 901, 913, 914
AsuC2I CCSGG 5 cut(s) 104, 142, 911, 912, 917
AsuHPI GGTGA 9 cut(s) 8, 331, 598, 610, 706, 712, 839, 887, 959
AvaI CYCGRG 4 cut(s) 275, 560, 661, 910
AvaII GGWCC 2 cut(s) 153, 901
BaeGI GKGCMC 2 cut(s) 140, 917
BanI GGYRCC 2 cut(s) 135, 774
BanII GRGCYC 3 cut(s) 93, 894, 917
BbrPI CACGTG 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 238, 280
Bbv12I GWGCWC 3 cut(s) 93, 753, 849
BbvI GCAGC 1 cut(s) 786
BccI CCATC 3 cut(s) 194, 691, 959
BceAI ACGGC 5 cut(s) 41, 68, 162, 788, 790
BcgI CGANNNNNNTGC 6 cut(s) 445, 479, 541, 575, 953, 987
BciT130I CCWGG 2 cut(s) 69, 884
BcnI CCSGG 5 cut(s) 104, 142, 911, 912, 917
BfmI CTRYAG 1 cut(s) 895
BfoI RGCGCY 2 cut(s) 113, 647
BglII AGATCT 1 cut(s) 405
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 7 cut(s) 69, 104, 142, 884, 911, 912, 917
Bme18I GGWCC 2 cut(s) 153, 901
BmeT110I CYCGRG 4 cut(s) 275, 560, 661, 910
BmgBI CACGTC 2 cut(s) 535, 832
BmgT120I GGNCC 4 cut(s) 153, 901, 913, 914
BmiI GGNNCC 6 cut(s) 137, 232, 776, 857, 902, 915
BmrFI CCNGG 7 cut(s) 69, 104, 142, 884, 911, 912, 917
BmsI GCATC 3 cut(s) 465, 504, 561
BpiI GAAGAC 2 cut(s) 238, 280
BpmI CTGGAG 2 cut(s) 242, 767
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 5 cut(s) 104, 142, 911, 912, 917
Bsa29I ATCGAT 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 9 cut(s) 51, 68, 84, 130, 140, 207, 226, 559, 910
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 758
Bse8I GATNNNNATC 1 cut(s) 701
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 2 cut(s) 69, 884
BseCI ATCGAT 1 cut(s) 705
BseDI CCNNGG 9 cut(s) 51, 68, 84, 130, 140, 207, 226, 559, 910
BseGI GGATG 2 cut(s) 189, 762
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
BseNI ACTGG 1 cut(s) 758
BsePI GCGCGC 3 cut(s) 426, 452, 579
BseRI GAGGAG 3 cut(s) 29, 464, 917
BseSI GKGCMC 2 cut(s) 140, 917
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 786
BseYI CCCAGC 2 cut(s) 574, 790
BsgI GTGCAG 3 cut(s) 13, 785, 1001
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 56, 129, 915
BshNI GGYRCC 2 cut(s) 135, 774
BshVI ATCGAT 1 cut(s) 705
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 3 cut(s) 93, 753, 849
BsiHKCI CYCGRG 4 cut(s) 275, 560, 661, 910
BsiSI CCGG 8 cut(s) 103, 121, 142, 240, 483, 584, 911, 917
BsiWI CGTACG 1 cut(s) 487
BslFI GGGAC 2 cut(s) 258, 914
BslI CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
BsmFI GGGAC 2 cut(s) 258, 914
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 3 cut(s) 56, 129, 915
BsoBI CYCGRG 4 cut(s) 275, 560, 661, 910
Bsp120I GGGCCC 1 cut(s) 913
Bsp1286I GDGCHC 6 cut(s) 93, 140, 753, 849, 894, 917
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 405, 469, 519, 702, 706
BspANI GGCC 3 cut(s) 56, 129, 915
BspDI ATCGAT 1 cut(s) 705
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 6 cut(s) 137, 232, 776, 857, 902, 915
BspT107I GGYRCC 2 cut(s) 135, 774
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 758
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 9 cut(s) 51, 68, 84, 130, 140, 207, 226, 559, 910
BssHII GCGCGC 3 cut(s) 426, 452, 579
BssMI GATC 5 cut(s) 405, 469, 519, 702, 706
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 69, 884
Bst4CI ACNGT 2 cut(s) 779, 979
BstACI GRCGYC 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 270
BstDSI CCRYGG 4 cut(s) 51, 84, 130, 226
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 189, 762
BstH2I RGCGCY 2 cut(s) 113, 647
BstKTI GATC 5 cut(s) 408, 472, 522, 705, 709
BstMBI GATC 5 cut(s) 405, 469, 519, 702, 706
BstMCI CGRYCG 1 cut(s) 57
BstNI CCWGG 2 cut(s) 69, 884
BstSCI CCNGG 7 cut(s) 67, 102, 140, 882, 909, 910, 915
BstSFI CTRYAG 1 cut(s) 895
BstSLI GKGCMC 2 cut(s) 140, 917
BstV1I GCAGC 1 cut(s) 786
BstV2I GAAGAC 2 cut(s) 238, 280
BstX2I RGATCY 1 cut(s) 405
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 405
BstZI CGGCCG 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 3 cut(s) 56, 129, 915
BsuTUI ATCGAT 1 cut(s) 705
BtgI CCRYGG 4 cut(s) 51, 84, 130, 226
BtgZI GCGATG 1 cut(s) 181
BtrI CACGTC 2 cut(s) 535, 832
BtsCI GGATG 2 cut(s) 189, 762
BtsIMutI CAGTG 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 153, 901, 913, 914
Cfr42I CCGCGG 3 cut(s) 54, 133, 229
Cfr9I CCCGGG 1 cut(s) 910
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 4 cut(s) 173, 232, 322, 432
Csp6I GTAC 5 cut(s) 59, 412, 488, 589, 733
CviAII CATG 1 cut(s) 202
CviQI GTAC 5 cut(s) 59, 412, 488, 589, 733
DpnI GATC 5 cut(s) 407, 471, 521, 704, 708
DpnII GATC 5 cut(s) 405, 469, 519, 702, 706
DrdI GACNNNNNNGTC 2 cut(s) 151, 521
DseDI GACNNNNNNGTC 2 cut(s) 151, 521
EaeI YGGCCR 2 cut(s) 54, 127
EagI CGGCCG 1 cut(s) 54
EciI GGCGGA 4 cut(s) 317, 356, 668, 682
Ecl136II GAGCTC 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 3 cut(s) 93, 894, 917
Eco47I GGWCC 2 cut(s) 153, 901
Eco52I CGGCCG 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 270
Eco88I CYCGRG 4 cut(s) 275, 560, 661, 910
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 2 cut(s) 67, 882
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 3 cut(s) 93, 894, 917
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 203, 1031, 1054
FaqI GGGAC 2 cut(s) 258, 914
FatI CATG 1 cut(s) 201
FauI CCCGC 2 cut(s) 125, 817
FblI GTMKAC 1 cut(s) 528
FokI GGATG 2 cut(s) 176, 769
FriOI GRGCYC 3 cut(s) 93, 894, 917
GsaI CCCAGC 2 cut(s) 578, 794
GsuI CTGGAG 2 cut(s) 242, 767
HaeII RGCGCY 2 cut(s) 113, 647
HaeIII GGCC 3 cut(s) 56, 129, 915
HapII CCGG 8 cut(s) 103, 121, 142, 240, 483, 584, 911, 917
HgaI GACGC 4 cut(s) 173, 232, 322, 432
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 5 cut(s) 24, 212, 509, 867, 953
HpaII CCGG 8 cut(s) 103, 121, 142, 240, 483, 584, 911, 917
HphI GGTGA 9 cut(s) 8, 331, 598, 610, 706, 712, 839, 887, 959
Hpy166II GTNNAC 2 cut(s) 529, 735
Hpy188I TCNGA 2 cut(s) 514, 958
Hpy188III TCNNGA 3 cut(s) 94, 121, 275
Hpy8I GTNNAC 2 cut(s) 529, 735
Hpy99I CGWCG 7 cut(s) 239, 323, 426, 527, 530, 533, 536
HpyAV CCTTC 3 cut(s) 358, 881, 1018
HpyCH4III ACNGT 2 cut(s) 779, 979
HpyCH4IV ACGT 4 cut(s) 32, 269, 534, 831
HpyCH4V TGCA 6 cut(s) 30, 116, 387, 766, 974, 982
HpySE526I ACGT 4 cut(s) 32, 269, 534, 831
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 205
Kpn2I TCCGGA 1 cut(s) 120
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
KspI CCGCGG 3 cut(s) 54, 133, 229
Kzo9I GATC 5 cut(s) 405, 469, 519, 702, 706
LmnI GCTCC 7 cut(s) 88, 96, 236, 669, 748, 844, 936
Lsp1109I GCAGC 1 cut(s) 786
LweI GCATC 3 cut(s) 465, 504, 561
MaeII ACGT 4 cut(s) 32, 269, 534, 831
MaeIII GTNAC 2 cut(s) 827, 875
MalI GATC 5 cut(s) 407, 471, 521, 704, 708
MboI GATC 5 cut(s) 405, 469, 519, 702, 706
MboII GAAGA 3 cut(s) 238, 280, 962
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 6 cut(s) 93, 140, 753, 849, 894, 917
MluCI AATT 1 cut(s) 959
MlyI GAGTC 4 cut(s) 18, 206, 503, 861
MmeI TCCRAC 1 cut(s) 537
MreI CGCCGGCG 1 cut(s) 239
MroI TCCGGA 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 239
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 200, 692
MspA1I CMGCKG 3 cut(s) 53, 132, 228
MspI CCGG 8 cut(s) 103, 121, 142, 240, 483, 584, 911, 917
MspR9I CCNGG 7 cut(s) 69, 104, 142, 884, 911, 912, 917
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 2 cut(s) 69, 884
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 5 cut(s) 104, 142, 911, 912, 917
NdeII GATC 5 cut(s) 405, 469, 519, 702, 706
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 6 cut(s) 137, 232, 776, 857, 902, 915
NmeAIII GCCGAG 1 cut(s) 849
NmuCI GTSAC 2 cut(s) 827, 875
OliI CACNNNNGTG 1 cut(s) 692
PalAI GGCGCGCC 1 cut(s) 579
PauI GCGCGC 3 cut(s) 426, 452, 579
PcsI WCGNNNNNNNCGW 6 cut(s) 54, 528, 531, 567, 803, 828
PctI GAATGC 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 953
Pfl23II CGTACG 1 cut(s) 487
PfoI TCCNGGA 1 cut(s) 102
PleI GAGTC 4 cut(s) 18, 206, 503, 861
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 4 cut(s) 18, 206, 503, 861
Ppu21I YACGTR 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 901
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 901
Psp6I CCWGG 2 cut(s) 67, 882
PspCI CACGTG 1 cut(s) 270
PspFI CCCAGC 2 cut(s) 574, 790
PspGI CCWGG 2 cut(s) 67, 882
PspLI CGTACG 1 cut(s) 487
PspN4I GGNNCC 6 cut(s) 137, 232, 776, 857, 902, 915
PspOMI GGGCCC 1 cut(s) 913
PspPI GGNCC 4 cut(s) 153, 901, 913, 914
PspPPI RGGWCCY 1 cut(s) 901
PsuI RGATCY 1 cut(s) 405
PteI GCGCGC 3 cut(s) 426, 452, 579
RsaI GTAC 5 cut(s) 60, 413, 489, 590, 734
RsaNI GTAC 5 cut(s) 59, 412, 488, 589, 733
RseI CAYNNNNRTG 2 cut(s) 200, 692
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 3 cut(s) 54, 133, 229
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 444
Sau3AI GATC 5 cut(s) 405, 469, 519, 702, 706
Sau96I GGNCC 4 cut(s) 153, 901, 913, 914
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 4 cut(s) 18, 206, 503, 861
ScrFI CCNGG 7 cut(s) 69, 104, 142, 884, 911, 912, 917
SduI GDGCHC 6 cut(s) 93, 140, 753, 849, 894, 917
SfaNI GCATC 3 cut(s) 465, 504, 561
SfcI CTRYAG 1 cut(s) 895
Sfr303I CCGCGG 3 cut(s) 54, 133, 229
SgrAI CRCCGGYG 1 cut(s) 239
SgrBI CCGCGG 3 cut(s) 54, 133, 229
SgrDI CGTCGACG 1 cut(s) 527
SgsI GGCGCGCC 1 cut(s) 579
SinI GGWCC 2 cut(s) 153, 901
SmaI CCCGGG 1 cut(s) 912
SmiMI CAYNNNNRTG 2 cut(s) 200, 692
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 1 cut(s) 959
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 7 cut(s) 67, 102, 140, 882, 909, 910, 915
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 779, 979
TaiI ACGT 4 cut(s) 35, 272, 537, 834
TaqI TCGA 6 cut(s) 381, 432, 507, 528, 705, 963
TasI AATT 1 cut(s) 959
TatI WGTACW 2 cut(s) 588, 732
TfiI GAWTC 1 cut(s) 953
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 758
TseFI GTSAC 2 cut(s) 827, 875
TseI GCWGC 1 cut(s) 799
Tsp45I GTSAC 2 cut(s) 827, 875
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 4 cut(s) 223, 241, 752, 879
TspMI CCCGGG 1 cut(s) 910
TspRI CASTG 1 cut(s) 758
VpaK11BI GGWCC 2 cut(s) 153, 901
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 1 cut(s) 959
XmaI CCCGGG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.