Rh4AG344000

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
65231069 .. 65232163
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG344000.1

Sequence Viewer

Length: 1095 bp
ATGGTGTCCTTATTCCCATTCTCTCACTCCACCAGAGTAGCGCAGATGCCATCAAATCATCACCGCCGACTCTGCACATTCCTCCTCGTCCTCGCCGCGGCCGTACATTTTCCGGCTGAAACCGCCTCCGTGGAGCTCCCGAAGTTCCGGGAAGCGCCTGCATTCCGGAATGGCCGCGGGTGCCCCCGGACGGCGTGGTCCTCGCTGGACGCGCACTCCCACAACCCCTCCATCATCCACATCGCCATGACCTTGGACTCCACCTACCTCCGCGGCTCCGTCGCCGGCGTCTTCTCCGTCCTCCAGCACGCCACGTGTCCCGAGAACATCGTCTTCCACTTCATCTCCACGCGCCACCGCCGCGACGACCTGCGCCGCGTCATCACCGCCACCTTCCCCTACCTCAAGTTCCGCCTCTACCACTTCGACTGCAACCTCGTCAAGGGCAAGATCTCGTACTCGGTGCGACGCGCGCTCGACCAGCCGCTCAACTACGCGCGCATCTACCTCGCCGATCTCCTCCCCTCCGGCGTACGCCGCATCATCTACTTCGACTCGGACCTGATCGTCGTCGACGACGTGGCGAAGCTCTGGCGCATCAACCTCGGGCGGCGAGTGCTGGGCGCGCCGGAGTACTGCCACGCGAACTTCACCAACTACTTCACCCCGAAGTTCTGGTCAAACGCGGCGCTGGTGGCGGAGTTCTCGGGGCGGAGCGCGTGCTATTTCAACACGGGGGTGATGGTGATCGATCTGTGGAAGTGGAGGGAGGGCAAGTACACGGAGAAGCTGGAGCACTGGATGAGCGTGCAGAAACGGCACCGTATTTACGAGCTGGGGTCGCTTCCGCCGTTTCTGTTGGTTTTCGCGGGTGACGTGGAGGGGGTGGAGCACAGGTGGAACCAGCACGGACTCGGCGGCGACAACCTGGAAGGGCTCTGTAGGGACCTCCACCCGGGCCCGGTCAGCCTCCTCCATTGGAGCGGTAAGGGCAAGCCCTGGCTCCGATTGGACTCCAAAAGGCCCTGTCCCTTGGATAGCCTATGGGCCCCGTACGACCTCTTTCGTCACTCCTCTCTCTTCGCTGATAGCTGA

Protein Analysis

364

Amino Acids

41.74

Weight (kDa)

9.4

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 80 - 336 1.2e-52 Glycosyl transferase family 8
Glyco_transf_24 PF18404 140 - 265 4.6e-08 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 196, 566
Acc36I ACCTGC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 180, 819
AccBSI CCGCTC 2 cut(s) 487, 984
AccI GTMKAC 1 cut(s) 573
AccIII TCCGGA 1 cut(s) 165
AcoI YGGCCR 2 cut(s) 99, 172
AcvI CACGTG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 6 cut(s) 105, 458, 534, 635, 779, 1055
AfiI CCNNNNNNNGG 5 cut(s) 97, 190, 442, 955, 961
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 1 cut(s) 730
AjiI CACGTC 2 cut(s) 580, 877
AjnI CCWGG 2 cut(s) 927, 998
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 5 cut(s) 136, 589, 790, 835, 1092
AluI AGCT 5 cut(s) 136, 589, 790, 835, 1092
Alw21I GWGCWC 3 cut(s) 138, 798, 894
Ama87I CYCGRG 4 cut(s) 320, 605, 706, 955
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 5 cut(s) 99, 172, 958, 1022, 1047
ApaI GGGCCC 2 cut(s) 962, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AscI GGCGCGCC 1 cut(s) 624
AspS9I GGNCC 8 cut(s) 198, 559, 946, 958, 959, 1023, 1047, 1048
AsuC2I CCSGG 5 cut(s) 149, 187, 956, 957, 962
AsuHPI GGTGA 7 cut(s) 53, 376, 643, 655, 751, 757, 884
AvaI CYCGRG 4 cut(s) 320, 605, 706, 955
AvaII GGWCC 3 cut(s) 198, 559, 946
BaeGI GKGCMC 3 cut(s) 185, 962, 1051
BanI GGYRCC 2 cut(s) 180, 819
BanII GRGCYC 4 cut(s) 138, 939, 962, 1051
BbrPI CACGTG 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 283, 325
Bbv12I GWGCWC 3 cut(s) 138, 798, 894
BccI CCATC 3 cut(s) 58, 239, 736
BceAI ACGGC 4 cut(s) 86, 207, 833, 835
BcgI CGANNNNNNTGC 4 cut(s) 490, 524, 586, 620
BciT130I CCWGG 2 cut(s) 929, 1000
BcnI CCSGG 5 cut(s) 149, 187, 956, 957, 962
BfmI CTRYAG 1 cut(s) 940
BfoI RGCGCY 2 cut(s) 158, 692
BfuAI ACCTGC 1 cut(s) 378
BglII AGATCT 1 cut(s) 450
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 7 cut(s) 149, 187, 929, 956, 957, 962, 1000
Bme18I GGWCC 3 cut(s) 198, 559, 946
BmeT110I CYCGRG 4 cut(s) 320, 605, 706, 955
BmgBI CACGTC 2 cut(s) 580, 877
BmgT120I GGNCC 8 cut(s) 198, 559, 946, 958, 959, 1023, 1047, 1048
BmiI GGNNCC 9 cut(s) 182, 277, 821, 902, 947, 960, 1004, 1049, 1050
BmrFI CCNGG 7 cut(s) 149, 187, 929, 956, 957, 962, 1000
BmsI GCATC 4 cut(s) 36, 510, 549, 606
BpiI GAAGAC 2 cut(s) 283, 325
BpmI CTGGAG 2 cut(s) 287, 812
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 5 cut(s) 149, 187, 956, 957, 962
Bsa29I ATCGAT 1 cut(s) 750
BsaAI YACGTR 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 746
BsaHI GRCGYC 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 190, 442, 955, 961
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 803
Bse8I GATNNNNATC 1 cut(s) 746
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 2 cut(s) 929, 1000
BseCI ATCGAT 1 cut(s) 750
BseGI GGATG 2 cut(s) 234, 807
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 5 cut(s) 97, 190, 442, 955, 961
BseNI ACTGG 1 cut(s) 803
BsePI GCGCGC 3 cut(s) 471, 497, 624
BseRI GAGGAG 4 cut(s) 74, 509, 962, 1063
BseSI GKGCMC 3 cut(s) 185, 962, 1051
BseX3I CGGCCG 1 cut(s) 99
BseYI CCCAGC 2 cut(s) 619, 835
BsgI GTGCAG 2 cut(s) 58, 830
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 5 cut(s) 101, 174, 960, 1024, 1049
BshNI GGYRCC 2 cut(s) 180, 819
BshVI ATCGAT 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 3 cut(s) 138, 798, 894
BsiHKCI CYCGRG 4 cut(s) 320, 605, 706, 955
BsiSI CCGG 9 cut(s) 113, 148, 166, 187, 285, 528, 629, 956, 962
BsiWI CGTACG 2 cut(s) 532, 1053
BslFI GGGAC 3 cut(s) 303, 959, 1014
BslI CCNNNNNNNGG 5 cut(s) 97, 190, 442, 955, 961
BsmFI GGGAC 3 cut(s) 303, 959, 1014
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 5 cut(s) 101, 174, 960, 1024, 1049
BsoBI CYCGRG 4 cut(s) 320, 605, 706, 955
Bsp120I GGGCCC 2 cut(s) 958, 1047
Bsp1286I GDGCHC 7 cut(s) 138, 185, 798, 894, 939, 962, 1051
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 5 cut(s) 450, 514, 564, 747, 751
BspANI GGCC 5 cut(s) 101, 174, 960, 1024, 1049
BspDI ATCGAT 1 cut(s) 750
BspEI TCCGGA 1 cut(s) 165
BspLI GGNNCC 9 cut(s) 182, 277, 821, 902, 947, 960, 1004, 1049, 1050
BspMI ACCTGC 1 cut(s) 378
BspT107I GGYRCC 2 cut(s) 180, 819
BsrBI CCGCTC 2 cut(s) 487, 984
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 803
BssAI RCCGGY 1 cut(s) 284
BssHII GCGCGC 3 cut(s) 471, 497, 624
BssMI GATC 5 cut(s) 450, 514, 564, 747, 751
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 252, 1032
Bst2UI CCWGG 2 cut(s) 929, 1000
Bst4CI ACNGT 1 cut(s) 824
Bst6I CTCTTC 1 cut(s) 1085
BstACI GRCGYC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 9 cut(s) 159, 286, 309, 473, 499, 626, 721, 809, 995
BstDSI CCRYGG 4 cut(s) 96, 129, 175, 271
BstENI CCTNNNNNAGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 234, 807
BstH2I RGCGCY 2 cut(s) 158, 692
BstKTI GATC 5 cut(s) 453, 517, 567, 750, 754
BstMBI GATC 5 cut(s) 450, 514, 564, 747, 751
BstMCI CGRYCG 1 cut(s) 102
BstNI CCWGG 2 cut(s) 929, 1000
BstSCI CCNGG 7 cut(s) 147, 185, 927, 954, 955, 960, 998
BstSFI CTRYAG 1 cut(s) 940
BstSLI GKGCMC 3 cut(s) 185, 962, 1051
BstV2I GAAGAC 2 cut(s) 283, 325
BstX2I RGATCY 1 cut(s) 450
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 450
BstZI CGGCCG 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 750
BsuRI GGCC 5 cut(s) 101, 174, 960, 1024, 1049
BsuTUI ATCGAT 1 cut(s) 750
BtgI CCRYGG 4 cut(s) 96, 129, 175, 271
BtgZI GCGATG 1 cut(s) 226
BtrI CACGTC 2 cut(s) 580, 877
BtsCI GGATG 2 cut(s) 234, 807
BtsIMutI CAGTG 1 cut(s) 796
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 9 cut(s) 159, 286, 309, 473, 499, 626, 721, 809, 995
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 8 cut(s) 198, 559, 946, 958, 959, 1023, 1047, 1048
Cfr42I CCGCGG 3 cut(s) 99, 178, 274
Cfr9I CCCGGG 1 cut(s) 955
ClaI ATCGAT 1 cut(s) 750
CseI GACGC 4 cut(s) 218, 277, 367, 477
Csp6I GTAC 6 cut(s) 104, 457, 533, 634, 778, 1054
CviAII CATG 1 cut(s) 247
CviQI GTAC 6 cut(s) 104, 457, 533, 634, 778, 1054
DpnI GATC 5 cut(s) 452, 516, 566, 749, 753
DpnII GATC 5 cut(s) 450, 514, 564, 747, 751
DrdI GACNNNNNNGTC 2 cut(s) 196, 566
DseDI GACNNNNNNGTC 2 cut(s) 196, 566
EaeI YGGCCR 2 cut(s) 99, 172
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 1085
EarI CTCTTC 1 cut(s) 1085
EciI GGCGGA 4 cut(s) 401, 713, 727, 837
Ecl136II GAGCTC 1 cut(s) 136
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 2 cut(s) 252, 1032
Eco24I GRGCYC 4 cut(s) 138, 939, 962, 1051
Eco47I GGWCC 3 cut(s) 198, 559, 946
Eco52I CGGCCG 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 315
Eco88I CYCGRG 4 cut(s) 320, 605, 706, 955
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 440
EcoO109I RGGNCCY 3 cut(s) 946, 1023, 1048
EcoRII CCWGG 2 cut(s) 927, 998
EcoT14I CCWWGG 2 cut(s) 252, 1032
EcoT38I GRGCYC 4 cut(s) 138, 939, 962, 1051
ErhI CCWWGG 2 cut(s) 252, 1032
FaeI CATG 1 cut(s) 250
FaiI YATR 2 cut(s) 248, 1045
FaqI GGGAC 3 cut(s) 303, 959, 1014
FatI CATG 1 cut(s) 246
FauI CCCGC 2 cut(s) 170, 862
FblI GTMKAC 1 cut(s) 573
FokI GGATG 2 cut(s) 221, 814
FriOI GRGCYC 4 cut(s) 138, 939, 962, 1051
GsaI CCCAGC 2 cut(s) 623, 839
GsuI CTGGAG 2 cut(s) 287, 812
HaeII RGCGCY 2 cut(s) 158, 692
HaeIII GGCC 5 cut(s) 101, 174, 960, 1024, 1049
HapII CCGG 9 cut(s) 113, 148, 166, 187, 285, 528, 629, 956, 962
HgaI GACGC 4 cut(s) 218, 277, 367, 477
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 69, 257, 554, 912, 1013
HpaII CCGG 9 cut(s) 113, 148, 166, 187, 285, 528, 629, 956, 962
HphI GGTGA 7 cut(s) 53, 376, 643, 655, 751, 757, 884
Hpy166II GTNNAC 2 cut(s) 574, 780
Hpy188I TCNGA 2 cut(s) 559, 1007
Hpy188III TCNNGA 3 cut(s) 139, 166, 320
Hpy8I GTNNAC 2 cut(s) 574, 780
Hpy99I CGWCG 7 cut(s) 284, 368, 471, 572, 575, 578, 581
HpyAV CCTTC 2 cut(s) 403, 926
HpyCH4III ACNGT 1 cut(s) 824
HpyCH4IV ACGT 3 cut(s) 314, 579, 876
HpyCH4V TGCA 4 cut(s) 75, 161, 432, 811
HpySE526I ACGT 3 cut(s) 314, 579, 876
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 250
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
KspI CCGCGG 3 cut(s) 99, 178, 274
Kzo9I GATC 5 cut(s) 450, 514, 564, 747, 751
LmnI GCTCC 8 cut(s) 133, 141, 281, 714, 793, 889, 981, 1008
LweI GCATC 4 cut(s) 36, 510, 549, 606
MaeII ACGT 3 cut(s) 314, 579, 876
MaeIII GTNAC 2 cut(s) 872, 1067
MalI GATC 5 cut(s) 452, 516, 566, 749, 753
MbiI CCGCTC 2 cut(s) 487, 984
MboI GATC 5 cut(s) 450, 514, 564, 747, 751
MboII GAAGA 3 cut(s) 283, 325, 1072
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 7 cut(s) 138, 185, 798, 894, 939, 962, 1051
MlyI GAGTC 5 cut(s) 63, 251, 548, 906, 1007
MreI CGCCGGCG 1 cut(s) 284
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 1 cut(s) 284
MslI CAYNNNNRTG 2 cut(s) 245, 737
MspA1I CMGCKG 3 cut(s) 98, 177, 273
MspI CCGG 9 cut(s) 113, 148, 166, 187, 285, 528, 629, 956, 962
MspR9I CCNGG 7 cut(s) 149, 187, 929, 956, 957, 962, 1000
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 2 cut(s) 929, 1000
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 5 cut(s) 149, 187, 956, 957, 962
NdeII GATC 5 cut(s) 450, 514, 564, 747, 751
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 9 cut(s) 182, 277, 821, 902, 947, 960, 1004, 1049, 1050
NmeAIII GCCGAG 1 cut(s) 894
NmuCI GTSAC 2 cut(s) 872, 1067
OliI CACNNNNGTG 1 cut(s) 737
PalAI GGCGCGCC 1 cut(s) 624
PauI GCGCGC 3 cut(s) 471, 497, 624
PcsI WCGNNNNNNNCGW 5 cut(s) 99, 573, 576, 848, 873
PctI GAATGC 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 286
Pfl23II CGTACG 2 cut(s) 532, 1053
PfoI TCCNGGA 1 cut(s) 147
PleI GAGTC 5 cut(s) 63, 251, 548, 906, 1007
PmaCI CACGTG 1 cut(s) 315
PmlI CACGTG 1 cut(s) 315
PpsI GAGTC 5 cut(s) 63, 251, 548, 906, 1007
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 946
Psp124BI GAGCTC 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 946
Psp6I CCWGG 2 cut(s) 927, 998
PspCI CACGTG 1 cut(s) 315
PspFI CCCAGC 2 cut(s) 619, 835
PspGI CCWGG 2 cut(s) 927, 998
PspLI CGTACG 2 cut(s) 532, 1053
PspN4I GGNNCC 9 cut(s) 182, 277, 821, 902, 947, 960, 1004, 1049, 1050
PspOMI GGGCCC 2 cut(s) 958, 1047
PspPI GGNCC 8 cut(s) 198, 559, 946, 958, 959, 1023, 1047, 1048
PspPPI RGGWCCY 1 cut(s) 946
PsuI RGATCY 1 cut(s) 450
PteI GCGCGC 3 cut(s) 471, 497, 624
RsaI GTAC 6 cut(s) 105, 458, 534, 635, 779, 1055
RsaNI GTAC 6 cut(s) 104, 457, 533, 634, 778, 1054
RseI CAYNNNNRTG 2 cut(s) 245, 737
SacI GAGCTC 1 cut(s) 138
SacII CCGCGG 3 cut(s) 99, 178, 274
SalI GTCGAC 1 cut(s) 572
Sau3AI GATC 5 cut(s) 450, 514, 564, 747, 751
Sau96I GGNCC 8 cut(s) 198, 559, 946, 958, 959, 1023, 1047, 1048
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 5 cut(s) 63, 251, 548, 906, 1007
ScrFI CCNGG 7 cut(s) 149, 187, 929, 956, 957, 962, 1000
SduI GDGCHC 7 cut(s) 138, 185, 798, 894, 939, 962, 1051
SfaNI GCATC 4 cut(s) 36, 510, 549, 606
SfcI CTRYAG 1 cut(s) 940
Sfr303I CCGCGG 3 cut(s) 99, 178, 274
SgrAI CRCCGGYG 1 cut(s) 284
SgrBI CCGCGG 3 cut(s) 99, 178, 274
SgrDI CGTCGACG 1 cut(s) 572
SgsI GGCGCGCC 1 cut(s) 624
SinI GGWCC 3 cut(s) 198, 559, 946
SmaI CCCGGG 1 cut(s) 957
SmiMI CAYNNNNRTG 2 cut(s) 245, 737
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 7 cut(s) 147, 185, 927, 954, 955, 960, 998
StyI CCWWGG 2 cut(s) 252, 1032
TaaI ACNGT 1 cut(s) 824
TaiI ACGT 3 cut(s) 317, 582, 879
TaqI TCGA 5 cut(s) 426, 477, 552, 573, 750
TatI WGTACW 2 cut(s) 633, 777
TscAI CASTG 1 cut(s) 803
TseFI GTSAC 2 cut(s) 872, 1067
Tsp45I GTSAC 2 cut(s) 872, 1067
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 5 cut(s) 118, 268, 286, 797, 924
TspMI CCCGGG 1 cut(s) 955
TspRI CASTG 1 cut(s) 803
VpaK11BI GGWCC 3 cut(s) 198, 559, 946
XagI CCTNNNNNAGG 1 cut(s) 440
XmaI CCCGGG 1 cut(s) 955
XmiI GTMKAC 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.