Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006288

Physical Location & Seq

Genomic Coordinates Reverse (-)

10582447 .. 10582692

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGACATTGGATACCACCTACCTCCGCGGTTTTGTTGTCGACGTCTTCTCAGTCATCCGTCAAGCTACCTACCCCGAAAACATAGTCTTCCACTTCACCGCCACCTCCCACTGCAGTTGCCGCTCCTCCAACCTCCATCACATCATCACCTCCACCTTCCACCTCTACCACTTCGACTCCAACCTCGTCCGGGGCAAGATCTCATACTCCGTCCATCGCGCCCTTGATCAGCCCCTGACTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

82

Amino Acids

9.37

Weight (kDa)

8.77

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13250
fragaria_vesca	FvH4_4g28060
malus_domestica	MD13G1046300.v1.1 MD16G1048100.v1.1
prunus_persica	Prupe.1G305600_v2.0.a1
pyrus_communis	pycom13g04060 pycom13g14600 pycom16g04200
rosa_chinensis	RchiOBHm_Chr4g0387681 RchiOBHm_Chr4g0435811
rosa_laevigata	RLG00000006557
rosa_multiflora	Rmu_co8360435.1_g000001 Rmu_sc0010838.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361740 Rroxscaffold_5G00376990
rosa_rugosa	Rorug02G0138300 Rorug04G0289700 Rorug05G0129600
rosa_samantha	Rh2BG035000 Rh2DG292100 Rh4AG119700 Rh4AG344000 Rh4CG367300 Rh4DG346800 Rh6BG278600 Rh6CG170100
rosa_wichuraiana	Rw4G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	2 cut(s)	27, 219
AciI	CCGC	4 cut(s)	25, 27, 99, 121
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	190, 240
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	88, 139
BbsI	GAAGAC	2 cut(s)	37, 79
BccI	CCATC	2 cut(s)	144, 222
BciVI	GTATCC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	4
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BpiI	GAAGAC	2 cut(s)	37, 79
BpuMI	CCSGG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	25, 190
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 240
BseDI	CCNNGG	2 cut(s)	25, 190
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	190, 240
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	27, 219
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	190, 240
Bsp143I	GATC	2 cut(s)	198, 226
BspACI	CCGC	4 cut(s)	25, 27, 99, 121
BspCNI	CTCAG	1 cut(s)	62
BspFNI	CGCG	2 cut(s)	27, 219
BspMAI	CTGCAG	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	25, 190
BssMI	GATC	2 cut(s)	198, 226
BssNI	GRCGYC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	2 cut(s)	27, 219
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	201, 229
BstMBI	GATC	2 cut(s)	198, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	2 cut(s)	27, 219
BstV2I	GAAGAC	2 cut(s)	37, 79
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	1 cut(s)	221
Cfr42I	CCGCGG	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviJI	RGCY	2 cut(s)	65, 232
CviKI_1	RGCY	2 cut(s)	65, 232
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	2 cut(s)	200, 228
DpnII	GATC	2 cut(s)	198, 226
FaiI	YATR	2 cut(s)	83, 205
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	121
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	88, 139
Hpy166II	GTNNAC	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	226
KspI	CCGCGG	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	198, 226
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	1 cut(s)	203
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	42
MalI	GATC	2 cut(s)	200, 228
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	198, 226
MboII	GAAGA	2 cut(s)	37, 79
MflI	RGATCY	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	153, 204
MnlI	CCTC	7 cut(s)	32, 115, 136, 143, 160, 173, 194
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	27, 219
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	198, 226
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	198
SacII	CCGCGG	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	198, 226
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	28
SgeI	CNNG	9 cut(s)	38, 74, 86, 197, 202, 203, 208, 230, 236
SgrBI	CCGCGG	1 cut(s)	28
SsiI	CCGC	4 cut(s)	25, 27, 99, 121
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	39, 174
TauI	GCSGC	1 cut(s)	123
TscAI	CASTG	1 cut(s)	116
TspGWI	ACGGA	2 cut(s)	47, 199
TspRI	CASTG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.