Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006288

Physical Location & Seq

Genomic Coordinates Forward (+)

42466717 .. 42468984

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAATTCCACATCCGCCATTTCGACCGGAACCTCGTGAAGGCCGAGATCTCATACTCAATTCAGTGGGCATTTGATCAGCCTCTCAACTACCTGCGAATCTACTGCGCCAATTTCATTGATTTTGACTTGGCGTGTCTACTTAAAGCCAAGGGCTTGGGTGGAGTTGATAAGAAAGATGTGAGGAAGGCTCTTAAGGGCAGATCAGAAACTGAGGTGAAAAGGGTCATTGACACTCTCATGGTATGGCTCATGGATCTATATGTTAAATGTACAGCAATATGGGTTTTCTTCATTTCGGTCATACCAAAAGAAAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

107

Amino Acids

12.55

Weight (kDa)

9.03

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13250
fragaria_vesca	FvH4_4g28060
malus_domestica	MD13G1046300.v1.1 MD16G1048100.v1.1
prunus_persica	Prupe.1G305600_v2.0.a1
pyrus_communis	pycom13g04060 pycom13g14600 pycom16g04200
rosa_chinensis	RchiOBHm_Chr4g0387681 RchiOBHm_Chr4g0435811
rosa_laevigata	RLG00000006557
rosa_multiflora	Rmu_co8360435.1_g000001 Rmu_sc0010838.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361740 Rroxscaffold_5G00376990
rosa_rugosa	Rorug02G0138300 Rorug04G0289700 Rorug05G0129600
rosa_samantha	Rh2BG035000 Rh2DG292100 Rh4AG119700 Rh4AG344000 Rh4CG367300 Rh4DG346800 Rh6BG278600 Rh6CG170100
rosa_wichuraiana	Rw4G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	139
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	194
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	229
BauI	CACGAG	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BclI	TGATCA	1 cut(s)	76
BfrI	CTTAAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	48, 76, 203, 256
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	48, 76, 203, 256
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	51, 79, 206, 259
BstMBI	GATC	4 cut(s)	48, 76, 203, 256
BstMCI	CGRYCG	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	48, 256
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	48, 256
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	71
BveI	ACCTGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	241, 253
CviJI	RGCY	6 cut(s)	44, 82, 149, 156, 191, 250
CviKI_1	RGCY	6 cut(s)	44, 82, 149, 156, 191, 250
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	4 cut(s)	50, 78, 205, 258
DpnII	GATC	4 cut(s)	48, 76, 203, 256
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	244, 256
FaiI	YATR	8 cut(s)	55, 242, 247, 254, 262, 264, 283, 305
FatI	CATG	2 cut(s)	240, 252
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	139
GlaI	GCGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	244, 256
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	34, 181
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	244, 256
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	48, 76, 203, 256
LpnPI	CCDG	2 cut(s)	41, 107
MalI	GATC	4 cut(s)	50, 78, 205, 258
MboI	GATC	4 cut(s)	48, 76, 203, 256
MboII	GAAGA	1 cut(s)	283
MflI	RGATCY	2 cut(s)	48, 256
MluCI	AATT	3 cut(s)	5, 60, 112
MnlI	CCTC	4 cut(s)	44, 93, 177, 208
MseI	TTAA	3 cut(s)	144, 195, 267
MslI	CAYNNNNRTG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	28
NdeII	GATC	4 cut(s)	48, 76, 203, 256
NlaIII	CATG	2 cut(s)	244, 256
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	48, 256
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	144, 195, 267
Sau3AI	GATC	4 cut(s)	48, 76, 203, 256
SetI	ASST	3 cut(s)	36, 96, 219
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	5, 60, 112
SsiI	CCGC	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	3 cut(s)	5, 60, 112
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	3 cut(s)	144, 195, 267
Tru9I	TTAA	3 cut(s)	144, 195, 267
TscAI	CASTG	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	17, 106, 283
TspRI	CASTG	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.