MD13G1046300.v1.1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
3212051 .. 3213124
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1046300.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGCCACAGGGCCATGGTCCTCTCCACCTCCTCCTCGCCGCCCTCTTCCTGGCTGCAACCGTACAATTTCCGGCGAATTCCGCCGCCGCCGAGCTCCCCGAGTTCCGAGAAGCACCTGCATTCCGCAACGGACGAGGATGCCCCCGAACCGCATGGTCCTCGTTGGACCAGAACTCCCACTACGACCCCTCCATCATCCACATCGCCATGACATTGGACACCACCTACCTCCGCGGCTCCGTTGCCGGCGTCTTCTCCGTCCTCCGTCACGCTACCTGCCCCGAAAACATAGTCTTCCACTTCATCGCCGCCTCCCACCGCAGTCGCCGCTCCTCCGACCTCCACCACGTCATCACCTCCACCTTCCCTTACCTCACATTCCACCTCTACCACTTCGACTCCAACCTCGTTCGGGGCAAGATCTCATACTCCGTCCGCCGCGCCCTTGATCAGCCCCTGAACTACGCGCGCATCTACCTCGCGGATCTCCTCCCATCGGGCGTCCGCCGCATCATCTACTTCGACTCCGACCTCATTGTCGTCGACGACGTGGCGAGGCTGTGGCGGATCGACCTCGGGCGGCGCGTGCTGGGGGCGCCGGAGTACTGCCACGCCAATTTCACCAACTATTTCACCCCGAAATTCTGGTCGAACGCGGCATTCGCGGCGGAGTTCAAGGGGCGGAGCGCGTGCTACTTCAACACCGGGGTGATGGTGATCGATCTGTGGAAGTGGAGGGAGGGCAAGTACACGCAGAAGCTGGAGCACTGGATGCGGGTGCAGAAACGGTGTCGTATCTACGAGCTGGGTTCGCTGCCGCCGTTTCTGCTGGTGTTCGCGGGTGACGTGGAGGGGGTGGAACACAGGTGGAACCAGCACGGCCTTGGCGGTGACAACGTGGAGGGGCTGTGCAGGGACCTCCATTCTGGCCCAGTGAGCCTGCTGCACTGGAGCGGGAAAGGGAAGCCGTGGCTGAGGCTGGACTCGAAGCAGCCGTGTCCGTTGGATAGCTTGTGGGCCCCGTATGATCTGTATCGTGACCATCGTCACTCGTCACTGTTCTCTGATATCTGA

Protein Analysis

358

Amino Acids

40.78

Weight (kDa)

8.91

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 67 - 326 4.5e-51 Glycosyl transferase family 8
Glyco_transf_24 PF18404 154 - 254 4.3e-09 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
AasI GACNNNNNNGTC 1 cut(s) 536
Acc36I ACCTGC 2 cut(s) 124, 284
AccB1I GGYRCC 1 cut(s) 595
AccBSI CCGCTC 2 cut(s) 330, 954
AccI GTMKAC 1 cut(s) 543
AclWI GGATC 2 cut(s) 492, 575
AcsI RAATTY 2 cut(s) 76, 641
AcyI GRCGYC 3 cut(s) 249, 501, 596
AfaI GTAC 3 cut(s) 63, 605, 749
AfiI CCNNNNNNNGG 3 cut(s) 49, 412, 496
AgsI TTSAA 2 cut(s) 676, 700
AjiI CACGTC 3 cut(s) 349, 550, 847
AjnI CCWGG 1 cut(s) 48
AleI CACNNNNGTG 1 cut(s) 707
AluBI AGCT 4 cut(s) 94, 760, 805, 1011
AluI AGCT 4 cut(s) 94, 760, 805, 1011
Alw21I GWGCWC 2 cut(s) 96, 768
AlwI GGATC 2 cut(s) 492, 575
AlwNI CAGNNNCTG 2 cut(s) 457, 760
Ama87I CYCGRG 2 cut(s) 98, 575
AoxI GGCC 4 cut(s) 10, 880, 928, 1017
ApaI GGGCCC 1 cut(s) 1021
ApeKI GCWGC 4 cut(s) 53, 814, 943, 991
ApoI RAATTY 2 cut(s) 76, 641
ArsI GACNNNNNNTTYG 4 cut(s) 276, 308, 632, 664
AspLEI GCGC 6 cut(s) 443, 469, 471, 585, 598, 689
AspS9I GGNCC 8 cut(s) 10, 17, 156, 166, 916, 929, 1017, 1018
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 7 cut(s) 346, 613, 625, 721, 727, 854, 902
AvaI CYCGRG 2 cut(s) 98, 575
AvaII GGWCC 4 cut(s) 17, 156, 166, 916
BaeGI GKGCMC 1 cut(s) 1021
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 2 cut(s) 96, 1021
BbsI GAAGAC 2 cut(s) 244, 286
Bbv12I GWGCWC 2 cut(s) 96, 768
BbvCI CCTCAGC 1 cut(s) 974
BbvI GCAGC 4 cut(s) 40, 801, 930, 1003
BccI CCATC 4 cut(s) 200, 502, 706, 1050
BceAI ACGGC 4 cut(s) 805, 895, 952, 979
BcgI CGANNNNNNTGC 4 cut(s) 141, 175, 460, 494
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 706
BfoI RGCGCY 1 cut(s) 599
BfuAI ACCTGC 2 cut(s) 124, 284
BglII AGATCT 1 cut(s) 420
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 2 cut(s) 50, 706
Bme18I GGWCC 4 cut(s) 17, 156, 166, 916
BmeT110I CYCGRG 2 cut(s) 98, 575
BmgBI CACGTC 3 cut(s) 349, 550, 847
BmgT120I GGNCC 8 cut(s) 10, 17, 156, 166, 916, 929, 1017, 1018
BmiI GGNNCC 6 cut(s) 238, 597, 872, 917, 1019, 1020
BmrFI CCNGG 2 cut(s) 50, 706
BmrI ACTGGG 1 cut(s) 926
BmsI GCATC 4 cut(s) 128, 480, 519, 762
BmuI ACTGGG 1 cut(s) 926
BoxI GACNNNNGTC 1 cut(s) 1044
BpiI GAAGAC 2 cut(s) 244, 286
BpmI CTGGAG 2 cut(s) 782, 970
Bpu10I CCTNAGC 1 cut(s) 974
BpuMI CCSGG 1 cut(s) 706
Bsa29I ATCGAT 1 cut(s) 720
BsaBI GATNNNNATC 2 cut(s) 716, 1032
BsaHI GRCGYC 3 cut(s) 249, 501, 596
BsaJI CCNNGG 6 cut(s) 13, 232, 574, 705, 883, 968
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 412, 496
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 773, 932, 953
Bse8I GATNNNNATC 2 cut(s) 716, 1032
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 6 cut(s) 13, 232, 574, 705, 883, 968
BseGI GGATG 3 cut(s) 143, 195, 777
BseJI GATNNNNATC 2 cut(s) 716, 1032
BseLI CCNNNNNNNGG 3 cut(s) 49, 412, 496
BseMII CTCAG 1 cut(s) 965
BseNI ACTGG 3 cut(s) 773, 932, 953
BsePI GCGCGC 1 cut(s) 467
BseRI GAGGAG 4 cut(s) 20, 23, 322, 479
BseSI GKGCMC 1 cut(s) 1021
BseXI GCAGC 4 cut(s) 40, 801, 930, 1003
BseYI CCCAGC 2 cut(s) 589, 805
BsgI GTGCAG 3 cut(s) 800, 929, 931
BshFI GGCC 4 cut(s) 12, 882, 930, 1019
BshNI GGYRCC 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 720
BsiHKAI GWGCWC 2 cut(s) 96, 768
BsiHKCI CYCGRG 2 cut(s) 98, 575
BsiSI CCGG 4 cut(s) 71, 246, 599, 705
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 3 cut(s) 49, 412, 496
BsmFI GGGAC 1 cut(s) 929
BsmI GAATGC 2 cut(s) 119, 659
BsnI GGCC 4 cut(s) 12, 882, 930, 1019
BsoBI CYCGRG 2 cut(s) 98, 575
Bsp120I GGGCCC 1 cut(s) 1017
Bsp1286I GDGCHC 3 cut(s) 96, 768, 1021
Bsp143I GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
Bsp19I CCATGG 1 cut(s) 13
BspANI GGCC 4 cut(s) 12, 882, 930, 1019
BspCNI CTCAG 1 cut(s) 966
BspDI ATCGAT 1 cut(s) 720
BspLI GGNNCC 6 cut(s) 238, 597, 872, 917, 1019, 1020
BspMI ACCTGC 2 cut(s) 124, 284
BspPI GGATC 2 cut(s) 492, 575
BspT107I GGYRCC 1 cut(s) 595
BsrBI CCGCTC 2 cut(s) 330, 954
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 3 cut(s) 773, 932, 953
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 6 cut(s) 13, 232, 574, 705, 883, 968
BssHII GCGCGC 1 cut(s) 467
BssMI GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
BssNI GRCGYC 3 cut(s) 249, 501, 596
BssT1I CCWWGG 2 cut(s) 13, 883
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 61, 789, 1059
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 3 cut(s) 249, 501, 596
BstAPI GCANNNNNTGC 1 cut(s) 772
BstC8I GCNNGC 5 cut(s) 247, 469, 587, 691, 941
BstDEI CTNAG 1 cut(s) 974
BstDSI CCRYGG 3 cut(s) 13, 232, 968
BstF5I GGATG 3 cut(s) 143, 195, 777
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 6 cut(s) 443, 469, 471, 585, 598, 689
BstKTI GATC 7 cut(s) 423, 451, 487, 570, 720, 724, 1030
BstMBI GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
BstNI CCWGG 1 cut(s) 50
BstPAI GACNNNNGTC 1 cut(s) 1044
BstSCI CCNGG 2 cut(s) 48, 704
BstSLI GKGCMC 1 cut(s) 1021
BstV1I GCAGC 4 cut(s) 40, 801, 930, 1003
BstV2I GAAGAC 2 cut(s) 244, 286
BstX2I RGATCY 2 cut(s) 420, 484
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 2 cut(s) 420, 484
Bsu15I ATCGAT 1 cut(s) 720
BsuRI GGCC 4 cut(s) 12, 882, 930, 1019
BsuTUI ATCGAT 1 cut(s) 720
BtgI CCRYGG 3 cut(s) 13, 232, 968
BtgZI GCGATG 2 cut(s) 187, 289
BtrI CACGTC 3 cut(s) 349, 550, 847
BtsCI GGATG 3 cut(s) 143, 195, 777
BtsIMutI CAGTG 4 cut(s) 766, 939, 946, 1055
BveI ACCTGC 2 cut(s) 124, 284
Cac8I GCNNGC 5 cut(s) 247, 469, 587, 691, 941
CaiI CAGNNNCTG 2 cut(s) 457, 760
CfoI GCGC 6 cut(s) 443, 469, 471, 585, 598, 689
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 8 cut(s) 10, 17, 156, 166, 916, 929, 1017, 1018
Cfr42I CCGCGG 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 2 cut(s) 238, 490
Csp6I GTAC 3 cut(s) 62, 604, 748
CviAII CATG 3 cut(s) 14, 153, 208
CviQI GTAC 3 cut(s) 62, 604, 748
DdeI CTNAG 1 cut(s) 974
DinI GGCGCC 1 cut(s) 597
DpnI GATC 7 cut(s) 422, 450, 486, 569, 719, 723, 1029
DpnII GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 6 cut(s) 70, 425, 494, 580, 683, 697
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 13, 883
Eco24I GRGCYC 2 cut(s) 96, 1021
Eco32I GATATC 1 cut(s) 1069
Eco47I GGWCC 4 cut(s) 17, 156, 166, 916
Eco53kI GAGCTC 1 cut(s) 94
Eco88I CYCGRG 2 cut(s) 98, 575
EcoICRI GAGCTC 1 cut(s) 94
EcoO109I RGGNCCY 2 cut(s) 916, 1018
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 1069
EcoT14I CCWWGG 2 cut(s) 13, 883
EcoT38I GRGCYC 2 cut(s) 96, 1021
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
ErhI CCWWGG 2 cut(s) 13, 883
FaeI CATG 3 cut(s) 17, 156, 211
FaiI YATR 6 cut(s) 15, 154, 209, 290, 427, 1026
FaqI GGGAC 1 cut(s) 929
FatI CATG 3 cut(s) 13, 152, 207
FauI CCCGC 3 cut(s) 768, 832, 947
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 543
FokI GGATG 3 cut(s) 150, 182, 784
FriOI GRGCYC 2 cut(s) 96, 1021
GlaI GCGC 6 cut(s) 442, 468, 470, 584, 597, 688
GsaI CCCAGC 2 cut(s) 593, 809
GsuI CTGGAG 2 cut(s) 782, 970
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 4 cut(s) 12, 882, 930, 1019
HapII CCGG 4 cut(s) 71, 246, 599, 705
HgaI GACGC 2 cut(s) 238, 490
HhaI GCGC 6 cut(s) 443, 469, 471, 585, 598, 689
Hin1I GRCGYC 3 cut(s) 249, 501, 596
Hin1II CATG 3 cut(s) 17, 156, 211
Hin6I GCGC 6 cut(s) 441, 467, 469, 583, 596, 687
HinP1I GCGC 6 cut(s) 441, 467, 469, 583, 596, 687
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 3 cut(s) 398, 524, 983
HpaII CCGG 4 cut(s) 71, 246, 599, 705
HphI GGTGA 7 cut(s) 346, 613, 625, 721, 727, 854, 902
Hpy166II GTNNAC 2 cut(s) 544, 750
Hpy188I TCNGA 5 cut(s) 107, 337, 529, 1066, 1073
Hpy188III TCNNGA 1 cut(s) 1037
Hpy8I GTNNAC 2 cut(s) 544, 750
Hpy99I CGWCG 3 cut(s) 545, 548, 551
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 3 cut(s) 61, 789, 1059
HpyCH4IV ACGT 4 cut(s) 348, 549, 846, 897
HpyCH4V TGCA 5 cut(s) 56, 119, 781, 912, 946
HpyF3I CTNAG 1 cut(s) 974
HpySE526I ACGT 4 cut(s) 348, 549, 846, 897
Hsp92I GRCGYC 3 cut(s) 249, 501, 596
Hsp92II CATG 3 cut(s) 17, 156, 211
HspAI GCGC 6 cut(s) 441, 467, 469, 583, 596, 687
KasI GGCGCC 1 cut(s) 595
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 448
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
LmnI GCTCC 6 cut(s) 99, 242, 335, 684, 763, 951
Lsp1109I GCAGC 4 cut(s) 40, 801, 930, 1003
LweI GCATC 4 cut(s) 128, 480, 519, 762
MaeII ACGT 4 cut(s) 348, 549, 846, 897
MaeIII GTNAC 6 cut(s) 266, 842, 890, 1037, 1046, 1053
MalI GATC 7 cut(s) 422, 450, 486, 569, 719, 723, 1029
MbiI CCGCTC 2 cut(s) 330, 954
MboI GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
MboII GAAGA 3 cut(s) 37, 244, 286
MflI RGATCY 2 cut(s) 420, 484
MhlI GDGCHC 3 cut(s) 96, 768, 1021
MluCI AATT 4 cut(s) 65, 76, 616, 641
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 3 cut(s) 392, 518, 977
MmeI TCCRAC 5 cut(s) 144, 360, 426, 552, 984
MroNI GCCGGC 1 cut(s) 245
MslI CAYNNNNRTG 2 cut(s) 206, 707
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 4 cut(s) 71, 246, 599, 705
MspR9I CCNGG 2 cut(s) 50, 706
Mva1269I GAATGC 2 cut(s) 119, 659
MvaI CCWGG 1 cut(s) 50
NaeI GCCGGC 1 cut(s) 247
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 1 cut(s) 706
NcoI CCATGG 1 cut(s) 13
NdeII GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 17, 156, 211
NlaIV GGNNCC 6 cut(s) 238, 597, 872, 917, 1019, 1020
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 6 cut(s) 266, 842, 890, 1037, 1046, 1053
OliI CACNNNNGTG 1 cut(s) 707
PaqCI CACCTGC 1 cut(s) 124
PauI GCGCGC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 6 cut(s) 546, 582, 818, 843, 992, 1042
PctI GAATGC 2 cut(s) 119, 659
PdiI GCCGGC 1 cut(s) 247
PleI GAGTC 3 cut(s) 392, 518, 977
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 3 cut(s) 392, 518, 977
PpuMI RGGWCCY 1 cut(s) 916
PshAI GACNNNNGTC 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 916
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 2 cut(s) 589, 805
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 6 cut(s) 238, 597, 872, 917, 1019, 1020
PspOMI GGGCCC 1 cut(s) 1017
PspPI GGNCC 8 cut(s) 10, 17, 156, 166, 916, 929, 1017, 1018
PspPPI RGGWCCY 1 cut(s) 916
PsrI GAACNNNNNNTAC 2 cut(s) 164, 196
PstNI CAGNNNCTG 2 cut(s) 457, 760
PsuI RGATCY 2 cut(s) 420, 484
PteI GCGCGC 1 cut(s) 467
RsaI GTAC 3 cut(s) 63, 605, 749
RsaNI GTAC 3 cut(s) 62, 604, 748
RseI CAYNNNNRTG 2 cut(s) 206, 707
SacI GAGCTC 1 cut(s) 96
SacII CCGCGG 1 cut(s) 235
SalI GTCGAC 1 cut(s) 542
Sau3AI GATC 7 cut(s) 420, 448, 484, 567, 717, 721, 1027
Sau96I GGNCC 8 cut(s) 10, 17, 156, 166, 916, 929, 1017, 1018
ScaI AGTACT 1 cut(s) 605
SchI GAGTC 3 cut(s) 392, 518, 977
ScrFI CCNGG 2 cut(s) 50, 706
SduI GDGCHC 3 cut(s) 96, 768, 1021
SfaNI GCATC 4 cut(s) 128, 480, 519, 762
SfoI GGCGCC 1 cut(s) 597
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SgrDI CGTCGACG 1 cut(s) 542
SinI GGWCC 4 cut(s) 17, 156, 166, 916
SmiMI CAYNNNNRTG 2 cut(s) 206, 707
Sse9I AATT 4 cut(s) 65, 76, 616, 641
SspDI GGCGCC 1 cut(s) 595
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 48, 704
StyI CCWWGG 2 cut(s) 13, 883
TaaI ACNGT 3 cut(s) 61, 789, 1059
TaiI ACGT 4 cut(s) 351, 552, 849, 900
TaqI TCGA 7 cut(s) 396, 522, 543, 570, 650, 720, 986
TasI AATT 4 cut(s) 65, 76, 616, 641
TatI WGTACW 2 cut(s) 603, 747
TscAI CASTG 4 cut(s) 773, 939, 953, 1062
TseFI GTSAC 6 cut(s) 266, 842, 890, 1037, 1046, 1053
TseI GCWGC 4 cut(s) 53, 814, 943, 991
Tsp45I GTSAC 6 cut(s) 266, 842, 890, 1037, 1046, 1053
TspDTI ATGAA 1 cut(s) 292
TspGWI ACGGA 6 cut(s) 144, 229, 247, 254, 421, 990
TspRI CASTG 4 cut(s) 773, 939, 953, 1062
VpaK11BI GGWCC 4 cut(s) 17, 156, 166, 916
XapI RAATTY 2 cut(s) 76, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.