Rw4G030050

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
56725353 .. 56726402
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030050.1

Sequence Viewer

Length: 1050 bp
ATGCCACCAAATCATCACCGCCGACTCTGCGCATTCCTCCTCGTCCTCGCCGCGGCAGTACATTTTCCGGCTGAAACCGCCGCCGTGGAGCTCCCGAAGTTCCGGGAAGCGCCTGCATTCCGGAATGGCCGCGGGTGCCCCCGGACGGCGTGGTCCTCGCTGGACGCGCACTCCCACAACCCCTCCATCATCCACATCGCCATGACCTTGGACTCCACCTACCTCCGAGGCTCCGTCGCTGGCGTCTTCTCCGTCCTCCAGCACGCCACGTGTCCCGAGAACATCGTCTTCCACTTCATCTCCACCCGCCACCGCCGCGACGACCTGCGCCGCGTCATCACCGCCACCTTCCCCTACCTCAAGTTCCGCCTCTACCACTTCGACTGCAACCTCGTCAAGGGCAAGATCTCGTACTCGGTGCGACGCGCTCTCGACCAGCCGCTCAACTACGCGCGCATCTACCTTGCGGATCTCCTCCCCTCCGGCGTACGCCGCATCATCTACTTCGACTCGGACCTGATCGTCGTCGACGACGTGGCGAAGCTCTGGCGCATCAACCTCGGGCGGCGCGTGCTGGGCGCGCCGGAGTACTGCCACGCGAACTTCACCAACTACTTCACCCCGAAGTTCTGGTCAAACGCGGCGCTGGCGGCGGAGTTCTCGGGGCGGAGCGCGTGCTATTTCAACACGGGGGTGATGGTGATCGATCTGTGGAAGTGGAGGGAGGGCAAGTACACGGAGAAGCTGGAGCACTGGATGAGCGTGCAGAAACGGCACCGTATTTACGAGCTGGGGTCGCTGCCGCCGTTTCTGTTGGTTTTCGCGGGTGACGTGGAGGGGGTGGAGCACAGGTGGAACCAGCACGGACTCGGCGGTGACAACCTGGAAGGGCTCTGTAGGGACCTCCACCCGGGCCCGGTCAGCCTCCTCCATTGGAGCGGTAAGGGCAAGCCCTGGCTCCGATTGGACTCCAAAAGGCCCTGTCCCTTGGATAGCCTGTGGGCCCCGTACGACCTCTTTCGTCACTCCTCTCTCTTCGCTGATAGCTGA

Protein Analysis

349

Amino Acids

39.98

Weight (kDa)

9.32

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 65 - 321 9.9e-53 Glycosyl transferase family 8
Glyco_transf_24 PF18404 125 - 250 2.3e-08 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 151, 521
Acc16I TGCGCA 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 2 cut(s) 135, 774
AccBSI CCGCTC 2 cut(s) 442, 939
AccI GTMKAC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 120
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 127
AcvI CACGTG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 6 cut(s) 60, 413, 489, 590, 734, 1010
AfiI CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 1 cut(s) 685
AjiI CACGTC 2 cut(s) 535, 832
AjnI CCWGG 2 cut(s) 882, 953
AleI CACNNNNGTG 1 cut(s) 692
AluBI AGCT 5 cut(s) 91, 544, 745, 790, 1047
AluI AGCT 5 cut(s) 91, 544, 745, 790, 1047
Alw21I GWGCWC 3 cut(s) 93, 753, 849
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 4 cut(s) 275, 560, 661, 910
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 4 cut(s) 127, 913, 977, 1002
ApaI GGGCCC 2 cut(s) 917, 1006
ApeKI GCWGC 1 cut(s) 799
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AscI GGCGCGCC 1 cut(s) 579
AspS9I GGNCC 8 cut(s) 153, 514, 901, 913, 914, 978, 1002, 1003
AsuC2I CCSGG 5 cut(s) 104, 142, 911, 912, 917
AsuHPI GGTGA 8 cut(s) 8, 331, 598, 610, 706, 712, 839, 887
AvaI CYCGRG 4 cut(s) 275, 560, 661, 910
AvaII GGWCC 3 cut(s) 153, 514, 901
BaeGI GKGCMC 3 cut(s) 140, 917, 1006
BanI GGYRCC 2 cut(s) 135, 774
BanII GRGCYC 4 cut(s) 93, 894, 917, 1006
BbrPI CACGTG 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 238, 280
Bbv12I GWGCWC 3 cut(s) 93, 753, 849
BbvI GCAGC 1 cut(s) 786
BccI CCATC 2 cut(s) 194, 691
BceAI ACGGC 4 cut(s) 68, 162, 788, 790
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 2 cut(s) 884, 955
BcnI CCSGG 5 cut(s) 104, 142, 911, 912, 917
BfmI CTRYAG 1 cut(s) 895
BfoI RGCGCY 2 cut(s) 113, 647
BfuAI ACCTGC 1 cut(s) 333
BglII AGATCT 1 cut(s) 405
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 7 cut(s) 104, 142, 884, 911, 912, 917, 955
Bme18I GGWCC 3 cut(s) 153, 514, 901
BmeT110I CYCGRG 4 cut(s) 275, 560, 661, 910
BmgBI CACGTC 2 cut(s) 535, 832
BmgT120I GGNCC 8 cut(s) 153, 514, 901, 913, 914, 978, 1002, 1003
BmiI GGNNCC 9 cut(s) 137, 232, 776, 857, 902, 915, 959, 1004, 1005
BmrFI CCNGG 7 cut(s) 104, 142, 884, 911, 912, 917, 955
BmsI GCATC 3 cut(s) 465, 504, 561
BpiI GAAGAC 2 cut(s) 238, 280
BpmI CTGGAG 2 cut(s) 242, 767
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 5 cut(s) 104, 142, 911, 912, 917
Bsa29I ATCGAT 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
Bse1I ACTGG 1 cut(s) 758
Bse8I GATNNNNATC 1 cut(s) 701
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 2 cut(s) 884, 955
BseCI ATCGAT 1 cut(s) 705
BseGI GGATG 2 cut(s) 189, 762
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
BseNI ACTGG 1 cut(s) 758
BsePI GCGCGC 2 cut(s) 452, 579
BseRI GAGGAG 4 cut(s) 29, 464, 917, 1018
BseSI GKGCMC 3 cut(s) 140, 917, 1006
BseXI GCAGC 1 cut(s) 786
BseYI CCCAGC 2 cut(s) 574, 790
BsgI GTGCAG 1 cut(s) 785
BshFI GGCC 4 cut(s) 129, 915, 979, 1004
BshNI GGYRCC 2 cut(s) 135, 774
BshVI ATCGAT 1 cut(s) 705
BsiHKAI GWGCWC 3 cut(s) 93, 753, 849
BsiHKCI CYCGRG 4 cut(s) 275, 560, 661, 910
BsiSI CCGG 8 cut(s) 68, 103, 121, 142, 483, 584, 911, 917
BsiWI CGTACG 2 cut(s) 487, 1008
BslFI GGGAC 3 cut(s) 258, 914, 969
BslI CCNNNNNNNGG 5 cut(s) 52, 145, 397, 910, 916
BsmFI GGGAC 3 cut(s) 258, 914, 969
BsmI GAATGC 2 cut(s) 32, 116
BsnI GGCC 4 cut(s) 129, 915, 979, 1004
BsoBI CYCGRG 4 cut(s) 275, 560, 661, 910
Bsp120I GGGCCC 2 cut(s) 913, 1002
Bsp1286I GDGCHC 7 cut(s) 93, 140, 753, 849, 894, 917, 1006
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 405, 469, 519, 702, 706
BspANI GGCC 4 cut(s) 129, 915, 979, 1004
BspDI ATCGAT 1 cut(s) 705
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 9 cut(s) 137, 232, 776, 857, 902, 915, 959, 1004, 1005
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 2 cut(s) 135, 774
BsrBI CCGCTC 2 cut(s) 442, 939
BsrI ACTGG 1 cut(s) 758
BssHII GCGCGC 2 cut(s) 452, 579
BssMI GATC 5 cut(s) 405, 469, 519, 702, 706
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 207, 987
Bst2UI CCWGG 2 cut(s) 884, 955
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 1040
BstACI GRCGYC 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 270
BstDSI CCRYGG 3 cut(s) 51, 84, 130
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 189, 762
BstH2I RGCGCY 2 cut(s) 113, 647
BstKTI GATC 5 cut(s) 408, 472, 522, 705, 709
BstMBI GATC 5 cut(s) 405, 469, 519, 702, 706
BstNI CCWGG 2 cut(s) 884, 955
BstSCI CCNGG 7 cut(s) 102, 140, 882, 909, 910, 915, 953
BstSFI CTRYAG 1 cut(s) 895
BstSLI GKGCMC 3 cut(s) 140, 917, 1006
BstV1I GCAGC 1 cut(s) 786
BstV2I GAAGAC 2 cut(s) 238, 280
BstX2I RGATCY 2 cut(s) 405, 469
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 2 cut(s) 405, 469
Bsu15I ATCGAT 1 cut(s) 705
BsuRI GGCC 4 cut(s) 129, 915, 979, 1004
BsuTUI ATCGAT 1 cut(s) 705
BtgI CCRYGG 3 cut(s) 51, 84, 130
BtgZI GCGATG 1 cut(s) 181
BtrI CACGTC 2 cut(s) 535, 832
BtsCI GGATG 2 cut(s) 189, 762
BtsIMutI CAGTG 1 cut(s) 751
BveI ACCTGC 1 cut(s) 333
Cfr13I GGNCC 8 cut(s) 153, 514, 901, 913, 914, 978, 1002, 1003
Cfr42I CCGCGG 2 cut(s) 54, 133
Cfr9I CCCGGG 1 cut(s) 910
ClaI ATCGAT 1 cut(s) 705
CseI GACGC 4 cut(s) 173, 232, 322, 432
Csp6I GTAC 6 cut(s) 59, 412, 488, 589, 733, 1009
CviAII CATG 1 cut(s) 202
CviQI GTAC 6 cut(s) 59, 412, 488, 589, 733, 1009
DpnI GATC 5 cut(s) 407, 471, 521, 704, 708
DpnII GATC 5 cut(s) 405, 469, 519, 702, 706
DrdI GACNNNNNNGTC 2 cut(s) 151, 521
DseDI GACNNNNNNGTC 2 cut(s) 151, 521
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 1040
EarI CTCTTC 1 cut(s) 1040
EciI GGCGGA 3 cut(s) 356, 668, 682
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 207, 987
Eco24I GRGCYC 4 cut(s) 93, 894, 917, 1006
Eco47I GGWCC 3 cut(s) 153, 514, 901
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 270
Eco88I CYCGRG 4 cut(s) 275, 560, 661, 910
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO109I RGGNCCY 3 cut(s) 901, 978, 1003
EcoRII CCWGG 2 cut(s) 882, 953
EcoT14I CCWWGG 2 cut(s) 207, 987
EcoT38I GRGCYC 4 cut(s) 93, 894, 917, 1006
ErhI CCWWGG 2 cut(s) 207, 987
FaeI CATG 1 cut(s) 205
FaiI YATR 1 cut(s) 203
FaqI GGGAC 3 cut(s) 258, 914, 969
FatI CATG 1 cut(s) 201
FauI CCCGC 3 cut(s) 125, 314, 817
FblI GTMKAC 1 cut(s) 528
FokI GGATG 2 cut(s) 176, 769
FriOI GRGCYC 4 cut(s) 93, 894, 917, 1006
FspI TGCGCA 1 cut(s) 31
GsaI CCCAGC 2 cut(s) 578, 794
GsuI CTGGAG 2 cut(s) 242, 767
HaeII RGCGCY 2 cut(s) 113, 647
HaeIII GGCC 4 cut(s) 129, 915, 979, 1004
HapII CCGG 8 cut(s) 68, 103, 121, 142, 483, 584, 911, 917
HgaI GACGC 4 cut(s) 173, 232, 322, 432
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 5 cut(s) 24, 212, 509, 867, 968
HpaII CCGG 8 cut(s) 68, 103, 121, 142, 483, 584, 911, 917
HphI GGTGA 8 cut(s) 8, 331, 598, 610, 706, 712, 839, 887
Hpy166II GTNNAC 2 cut(s) 529, 735
Hpy188I TCNGA 3 cut(s) 227, 514, 962
Hpy188III TCNNGA 4 cut(s) 94, 121, 275, 431
Hpy8I GTNNAC 2 cut(s) 529, 735
Hpy99I CGWCG 7 cut(s) 239, 323, 426, 527, 530, 533, 536
HpyAV CCTTC 2 cut(s) 358, 881
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 3 cut(s) 269, 534, 831
HpyCH4V TGCA 3 cut(s) 116, 387, 766
HpySE526I ACGT 3 cut(s) 269, 534, 831
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 205
Kpn2I TCCGGA 1 cut(s) 120
KspI CCGCGG 2 cut(s) 54, 133
Kzo9I GATC 5 cut(s) 405, 469, 519, 702, 706
LmnI GCTCC 8 cut(s) 88, 96, 236, 669, 748, 844, 936, 963
Lsp1109I GCAGC 1 cut(s) 786
LweI GCATC 3 cut(s) 465, 504, 561
MaeII ACGT 3 cut(s) 269, 534, 831
MaeIII GTNAC 3 cut(s) 827, 875, 1022
MalI GATC 5 cut(s) 407, 471, 521, 704, 708
MbiI CCGCTC 2 cut(s) 442, 939
MboI GATC 5 cut(s) 405, 469, 519, 702, 706
MboII GAAGA 3 cut(s) 238, 280, 1027
MflI RGATCY 2 cut(s) 405, 469
MhlI GDGCHC 7 cut(s) 93, 140, 753, 849, 894, 917, 1006
MlyI GAGTC 5 cut(s) 18, 206, 503, 861, 962
MroI TCCGGA 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 200, 692
MspA1I CMGCKG 2 cut(s) 53, 132
MspI CCGG 8 cut(s) 68, 103, 121, 142, 483, 584, 911, 917
MspR9I CCNGG 7 cut(s) 104, 142, 884, 911, 912, 917, 955
Mva1269I GAATGC 2 cut(s) 32, 116
MvaI CCWGG 2 cut(s) 884, 955
NciI CCSGG 5 cut(s) 104, 142, 911, 912, 917
NdeII GATC 5 cut(s) 405, 469, 519, 702, 706
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 9 cut(s) 137, 232, 776, 857, 902, 915, 959, 1004, 1005
NmeAIII GCCGAG 1 cut(s) 849
NmuCI GTSAC 3 cut(s) 827, 875, 1022
NsbI TGCGCA 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 692
PalAI GGCGCGCC 1 cut(s) 579
PauI GCGCGC 2 cut(s) 452, 579
PcsI WCGNNNNNNNCGW 5 cut(s) 528, 531, 567, 803, 828
PctI GAATGC 2 cut(s) 32, 116
Pfl23II CGTACG 2 cut(s) 487, 1008
PfoI TCCNGGA 1 cut(s) 102
PleI GAGTC 5 cut(s) 18, 206, 503, 861, 962
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 5 cut(s) 18, 206, 503, 861, 962
Ppu21I YACGTR 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 901
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 901
Psp6I CCWGG 2 cut(s) 882, 953
PspCI CACGTG 1 cut(s) 270
PspFI CCCAGC 2 cut(s) 574, 790
PspGI CCWGG 2 cut(s) 882, 953
PspLI CGTACG 2 cut(s) 487, 1008
PspN4I GGNNCC 9 cut(s) 137, 232, 776, 857, 902, 915, 959, 1004, 1005
PspOMI GGGCCC 2 cut(s) 913, 1002
PspPI GGNCC 8 cut(s) 153, 514, 901, 913, 914, 978, 1002, 1003
PspPPI RGGWCCY 1 cut(s) 901
PsuI RGATCY 2 cut(s) 405, 469
PteI GCGCGC 2 cut(s) 452, 579
RsaI GTAC 6 cut(s) 60, 413, 489, 590, 734, 1010
RsaNI GTAC 6 cut(s) 59, 412, 488, 589, 733, 1009
RseI CAYNNNNRTG 2 cut(s) 200, 692
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 2 cut(s) 54, 133
SalI GTCGAC 1 cut(s) 527
Sau3AI GATC 5 cut(s) 405, 469, 519, 702, 706
Sau96I GGNCC 8 cut(s) 153, 514, 901, 913, 914, 978, 1002, 1003
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 5 cut(s) 18, 206, 503, 861, 962
ScrFI CCNGG 7 cut(s) 104, 142, 884, 911, 912, 917, 955
SduI GDGCHC 7 cut(s) 93, 140, 753, 849, 894, 917, 1006
SfaNI GCATC 3 cut(s) 465, 504, 561
SfcI CTRYAG 1 cut(s) 895
Sfr303I CCGCGG 2 cut(s) 54, 133
SgrBI CCGCGG 2 cut(s) 54, 133
SgrDI CGTCGACG 1 cut(s) 527
SgsI GGCGCGCC 1 cut(s) 579
SinI GGWCC 3 cut(s) 153, 514, 901
SmaI CCCGGG 1 cut(s) 912
SmiMI CAYNNNNRTG 2 cut(s) 200, 692
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 7 cut(s) 102, 140, 882, 909, 910, 915, 953
StyI CCWWGG 2 cut(s) 207, 987
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 3 cut(s) 272, 537, 834
TaqI TCGA 5 cut(s) 381, 432, 507, 528, 705
TatI WGTACW 3 cut(s) 58, 588, 732
TscAI CASTG 1 cut(s) 758
TseFI GTSAC 3 cut(s) 827, 875, 1022
TseI GCWGC 1 cut(s) 799
Tsp45I GTSAC 3 cut(s) 827, 875, 1022
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 4 cut(s) 223, 241, 752, 879
TspMI CCCGGG 1 cut(s) 910
TspRI CASTG 1 cut(s) 758
VpaK11BI GGWCC 3 cut(s) 153, 514, 901
XagI CCTNNNNNAGG 1 cut(s) 395
XmaI CCCGGG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 528
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.