Rmu_sc0002372.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002372.1
OG0008104
Physical Location & Seq
Reverse (-)
63223 .. 63600
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002372.1_g000012.1.cds

Sequence Viewer

Length: 378 bp
atggacgggaagtgtaagttttgtcagttcatcttcagcgcagatgatgagaaaaccacgtttcaacacttgcagattgagcatgggaagcttctgtgtactgtgtgcaacgaaagttttccctataaggagcacggtgaaactctggagtatcactataatagtgtgaagcactggggcttcaacttttgtaacaagaagaaatgcttgaacagaatctttcagattggaagcaagcacaaatgtgtccacccattgccgaagaagcccaagcagaggaagaggcggggaaggaaggaagaggaggcgaaggaggaggagaacgaggacgaggacgaggacgatcaagatgaggcggccggcacaagtaacaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.75

Weight (kDa)

6.38

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 286, 356
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 19
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 3 cut(s) 65, 184, 211
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 135
AoxI GGCC 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 135
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 317, 329, 332
BseX3I CGGCCG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 276
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 2 cut(s) 286, 356
BspANI GGCC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 359
BssMI GATC 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 103, 137
Bst6I CTCTTC 2 cut(s) 275, 294
BstC8I GCNNGC 2 cut(s) 236, 361
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 3 cut(s) 79, 88, 265
BstZI CGGCCG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 236, 361
CfoI GCGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 359
Csp6I GTAC 1 cut(s) 99
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 91, 180, 268, 359
CviKI_1 RGCY 4 cut(s) 91, 180, 268, 359
CviQI GTAC 1 cut(s) 99
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 357
EagI CGGCCG 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 275, 294
EarI CTCTTC 2 cut(s) 275, 294
EclXI CGGCCG 1 cut(s) 357
Eco52I CGGCCG 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 19
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 84, 126, 159
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 357
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 360
HhaI GCGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 99, 250
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 146, 347
Hpy8I GTNNAC 2 cut(s) 99, 250
HpyAV CCTTC 3 cut(s) 285, 289, 304
HpyCH4III ACNGT 2 cut(s) 103, 137
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 73, 108
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 88, 265
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 39
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 131, 160, 373
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 191, 368
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 25, 211, 274, 292, 311
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 373
MroNI GCCGGC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 1 cut(s) 360
MwoI GCNNNNNNNGC 3 cut(s) 79, 88, 265
NaeI GCCGGC 1 cut(s) 361
NdeII GATC 1 cut(s) 343
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 1 cut(s) 86
OliI CACNNNNGTG 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 358
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 243
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 1 cut(s) 343
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 62, 93
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 373
SsiI CCGC 2 cut(s) 286, 356
TaaI ACNGT 2 cut(s) 103, 137
TaiI ACGT 1 cut(s) 62
TasI AATT 1 cut(s) 373
TatI WGTACW 1 cut(s) 98
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 1 cut(s) 216
TscAI CASTG 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.