Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008104

Physical Location & Seq

Genomic Coordinates Reverse (-)

72913283 .. 72914191

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGACGGGAAGTGTAAGTTTTGTCAGTTCATCTTCAGCGCAGATGATGAGAAAACCACGTTTCAACACTTGCAGTCTGAGCATGGGAAGCTTCTGTGTACTGTGTGCAACCAAAGTTTTCCCTATAAGGAGCACGGTGAAACTCTGAACTATCACTATAATAGTGTGAAGCACTGGGGCTTCAACTTTTGTAACAAGAAGAAATGCTTGAACAGAATCTTTCAGATTGGAAGCAAGCACAAATGTGTCCACCCATTGCCGAAGCAGCCCAAGCAGAGGAAGAGGCAGGGAAGGAAGGAAGAGGAGGAGAACGAGGAGGAGGACGAGGACGATCAAGATGAGGCGGCCGGCACAACTAGCCTTGACCCTGAATGTCAAAGTGCACCCAAAAGTCGACAAATTTCTTTCTTCACCCAAATGACCCTCTTGATGGCTTTCTGTGATTACTTGGGGAACTGTATAAAGGATGTGGTATCAGCTCCTAGACTTAGTTGCCCTCCTGTTATGAGAATAACAGCTACAAAAGATGAGGAGGATAATGAATCGGAATATGGAGTGCCATCTTCGATCTCACCGAAAATTATGTTTGCTTCTCTCGATACCTTTTGCATTGCATCCTATCTTATGCTCAGAATGAGGGTGTCTCTGAAATTTGGGTTTAGACATTGTATCTGGGGTCCAGCAAACATACCATCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

233

Amino Acids

26.77

Weight (kDa)

6.7

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008104)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17900 FvH4_1g29340
rosa_chinensis	RchiOBHm_Chr2g0108291 RchiOBHm_Chr5g0032181 RchiOBHm_Chr5g0032201
rosa_laevigata	RLG00000017661
rosa_multiflora	Rmu_co8366761.1_g000001 Rmu_sc0002372.1_g000012 Rmu_sc0005742.1_g000012 Rmu_sc0005742.1_g000013
rosa_roxburghii	Rroxscaffold_2G00135310 Rroxscaffold_7G00208130
rosa_rugosa	Rorug02G0001800 Rorug02G0150300 Rorug02G0455800 Rorug05G0129600
rosa_samantha	Rh1CG182100 Rh2AG200700 Rh2BG213700 Rh2DG208200 Rh2DG208300 Rh3AG297500 Rh5BG473200 Rh5CG495800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	394
AciI	CCGC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	399, 650
AcuI	CTGAAG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	276, 430
AgsI	TTSAA	3 cut(s)	65, 184, 211
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	91, 479, 518
AluI	AGCT	3 cut(s)	91, 479, 518
Alw21I	GWGCWC	2 cut(s)	135, 385
Alw26I	GTCTC	1 cut(s)	648
Alw44I	GTGCAC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	399, 650
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	3 cut(s)	149, 403, 564
AvaII	GGWCC	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	385
Bbv12I	GWGCWC	2 cut(s)	135, 385
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	3 cut(s)	424, 568, 700
BcoDI	GTCTC	1 cut(s)	648
BfaI	CTAG	2 cut(s)	357, 483
BisI	GCNGC	2 cut(s)	266, 345
BlsI	GCNGC	2 cut(s)	267, 346
Bme18I	GGWCC	1 cut(s)	677
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	678
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	623
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 430
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	254, 609
BseGI	GGATG	2 cut(s)	472, 614
BseLI	CCNNNNNNNGG	2 cut(s)	276, 430
BseMI	GCAATG	2 cut(s)	254, 609
BseMII	CTCAG	2 cut(s)	69, 643
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	5 cut(s)	317, 320, 329, 332, 545
BseSI	GKGCMC	1 cut(s)	385
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	135, 385
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	276, 430
BsmAI	GTCTC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	135, 385
Bsp143I	GATC	2 cut(s)	331, 567
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	70, 642
BspLI	GGNNCC	1 cut(s)	678
BsrDI	GCAATG	2 cut(s)	254, 609
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	347
BssMI	GATC	2 cut(s)	331, 567
Bst4CI	ACNGT	3 cut(s)	103, 137, 458
Bst6I	CTCTTC	2 cut(s)	275, 294
BstC8I	GCNNGC	2 cut(s)	236, 349
BstDEI	CTNAG	3 cut(s)	78, 488, 629
BstF5I	GGATG	2 cut(s)	472, 614
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	334, 570
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	2 cut(s)	331, 567
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 88, 265, 271, 357
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	472, 614
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	236, 349
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	677
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	8 cut(s)	91, 180, 268, 347, 360, 434, 479, 518
CviKI_1	RGCY	8 cut(s)	91, 180, 268, 347, 360, 434, 479, 518
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	78, 488, 629
DpnI	GATC	2 cut(s)	333, 569
DpnII	GATC	2 cut(s)	331, 567
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	275, 294
EarI	CTCTTC	2 cut(s)	275, 294
EclXI	CGGCCG	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	677
Eco52I	CGGCCG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	19
FaeI	CATG	1 cut(s)	86
FaiI	YATR	9 cut(s)	84, 126, 159, 461, 506, 552, 584, 626, 689
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	266, 345
FokI	GGATG	2 cut(s)	479, 601
Fsp4HI	GCNGC	2 cut(s)	266, 345
FspBI	CTAG	2 cut(s)	357, 483
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	266, 345
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	395
HindII	GTYRAC	1 cut(s)	395
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	216, 542
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	149, 403, 564
Hpy166II	GTNNAC	4 cut(s)	99, 250, 383, 395
Hpy188I	TCNGA	6 cut(s)	79, 147, 225, 547, 632, 648
Hpy188III	TCNNGA	3 cut(s)	335, 427, 596
Hpy8I	GTNNAC	4 cut(s)	99, 250, 383, 395
HpyAV	CCTTC	2 cut(s)	285, 289
HpyCH4III	ACNGT	3 cut(s)	103, 137, 458
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	73, 108, 383, 609, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 88, 265, 271, 357
HpyF3I	CTNAG	3 cut(s)	78, 488, 629
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	1 cut(s)	39
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	331, 567
LmnI	GCTCC	2 cut(s)	130, 484
LpnPI	CCDG	7 cut(s)	160, 272, 361, 381, 513, 658, 693
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	623
MaeI	CTAG	2 cut(s)	357, 483
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	333, 569
MboI	GATC	2 cut(s)	331, 567
MboII	GAAGA	6 cut(s)	25, 211, 292, 311, 400, 555
MhlI	GDGCHC	2 cut(s)	135, 385
MluCI	AATT	4 cut(s)	399, 579, 650, 697
MroNI	GCCGGC	1 cut(s)	347
MseI	TTAA	1 cut(s)	700
MslI	CAYNNNNRTG	2 cut(s)	243, 416
MspI	CCGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	5 cut(s)	79, 88, 265, 271, 357
NaeI	GCCGGC	1 cut(s)	349
NdeII	GATC	2 cut(s)	331, 567
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	678
OliI	CACNNNNGTG	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	216, 542
PkrI	GCNGC	2 cut(s)	267, 346
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	677
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	2 cut(s)	243, 416
SalI	GTCGAC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	2 cut(s)	266, 345
Sau3AI	GATC	2 cut(s)	331, 567
Sau96I	GGNCC	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	135, 385
SetI	ASST	5 cut(s)	62, 93, 481, 520, 605
SfaNI	GCATC	1 cut(s)	623
SinI	GGWCC	1 cut(s)	677
SmiMI	CAYNNNNRTG	2 cut(s)	243, 416
Sse9I	AATT	4 cut(s)	399, 579, 650, 697
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	357, 483
TaaI	ACNGT	3 cut(s)	103, 137, 458
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	394, 566, 597
TasI	AATT	4 cut(s)	399, 579, 650, 697
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	216, 542
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	19, 555
TspRI	CASTG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	2 cut(s)	399, 650
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	2 cut(s)	357, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.