Rorug02G0001800

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000090
Physical Location & Seq
Reverse (-)
219016 .. 225000
5985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0001800.1

Sequence Viewer

Length: 642 bp
ATGAGAAGAGATCAAGATATAGATAATCGATCAACTGAAAACAAGAGTGGCATGAACATGTTTGGTTCCGATGAAGAAATAGGCACCCAAATCCCAACTCAAGCTCAATCTGTTGTTGAAGGATCCGGAGCAGTTATGGTTTCAGAGTTTAGACCTGCAGCTGATGTGGATTATCTACAGGAGTTATTAGCCATTCAGCAACAAGGGCCCAGATCAATTGGCTTTTTTGGGACCCGGAATATGGGATTCATGCATCAAGAACTTATTGAGATACTTAGCTATGCGATGGTTATCACTAAAAACCACATTTATACATCAGGGGCATCTGGTACTAATGCAGCTGTTATCAGGGGTGCTTTAAGAGCAGAGAAACCAGAACTGCTTACTGTAATCTTGCCTCAAAGCTTGAAAAAGCAACCTCCAGAGAGCCAGGAATTATTGTCAAAAGTCAAGAATGTGATAGAGAAGCCTCACAATGATCATCTACCGCTGCTAGAAGCCAGCAGGTTGTGCAATATGGACATCATTTCACATGTACAGCAAGTAATATGCTTTGCGTTCCATGACAGTAAATTGTTAATGGAAACATGTCAAGAGGCAAAAAATCTCCGCAAAATTGTGACGCTGTTCTACCTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

213

Amino Acids

23.85

Weight (kDa)

5.7

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 163, 495
AccB1I GGYRCC 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 488, 610
AclWI GGATC 2 cut(s) 117, 130
AfaI GTAC 2 cut(s) 331, 537
AfiI CCNNNNNNNGG 1 cut(s) 241
AflIII ACRYGT 3 cut(s) 57, 532, 587
AgsI TTSAA 2 cut(s) 119, 409
AjnI CCWGG 2 cut(s) 429, 633
AluBI AGCT 5 cut(s) 104, 161, 279, 341, 405
AluI AGCT 5 cut(s) 104, 161, 279, 341, 405
AlwI GGATC 2 cut(s) 117, 130
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 206
ApaI GGGCCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 158, 338, 490
AspS9I GGNCC 3 cut(s) 206, 207, 231
AsuC2I CCSGG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 210
BamHI GGATCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 170, 350, 477
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 2 cut(s) 431, 635
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 2 cut(s) 156, 176
BfuAI ACCTGC 2 cut(s) 163, 495
BisI GCNGC 3 cut(s) 159, 339, 491
BlsI GCNGC 3 cut(s) 160, 340, 492
Bme1390I CCNGG 3 cut(s) 235, 431, 635
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 206, 207, 231
BmiI GGNNCC 6 cut(s) 67, 85, 124, 208, 232, 233
BmrFI CCNGG 3 cut(s) 235, 431, 635
BmsI GCATC 2 cut(s) 262, 332
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 2 cut(s) 431, 635
BseCI ATCGAT 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 210
BseXI GCAGC 3 cut(s) 170, 350, 477
BshFI GGCC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 28
BsiSI CCGG 2 cut(s) 126, 235
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 208
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 5 cut(s) 10, 29, 122, 212, 478
BspACI CCGC 2 cut(s) 488, 610
BspANI GGCC 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 28
BspEI TCCGGA 1 cut(s) 125
BspLI GGNNCC 6 cut(s) 67, 85, 124, 208, 232, 233
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 2 cut(s) 163, 495
BspPI GGATC 2 cut(s) 117, 130
BspT107I GGYRCC 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 535
BssMI GATC 5 cut(s) 10, 29, 122, 212, 478
Bst2UI CCWGG 2 cut(s) 431, 635
Bst4CI ACNGT 2 cut(s) 388, 569
BstAPI GCANNNNNTGC 1 cut(s) 510
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 1 cut(s) 275
BstKTI GATC 5 cut(s) 13, 32, 125, 215, 481
BstMBI GATC 5 cut(s) 10, 29, 122, 212, 478
BstMWI GCNNNNNNNGC 3 cut(s) 205, 362, 510
BstNI CCWGG 2 cut(s) 431, 635
BstNSI RCATGY 3 cut(s) 61, 536, 591
BstSCI CCNGG 3 cut(s) 233, 429, 633
BstSFI CTRYAG 2 cut(s) 156, 176
BstSLI GKGCMC 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 170, 350, 477
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 28
BsuRI GGCC 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 299
BveI ACCTGC 2 cut(s) 163, 495
Cac8I GCNNGC 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 206, 207, 231
ClaI ATCGAT 1 cut(s) 28
CseI GACGC 1 cut(s) 631
Csp6I GTAC 2 cut(s) 330, 536
CviAII CATG 6 cut(s) 52, 58, 250, 533, 563, 588
CviQI GTAC 2 cut(s) 330, 536
DdeI CTNAG 1 cut(s) 275
DpnI GATC 5 cut(s) 12, 31, 124, 214, 480
DpnII GATC 5 cut(s) 10, 29, 122, 212, 478
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 231
EcoO109I RGGNCCY 2 cut(s) 206, 231
EcoRII CCWGG 2 cut(s) 429, 633
EcoT22I ATGCAT 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 6 cut(s) 55, 61, 253, 536, 566, 591
FaqI GGGAC 1 cut(s) 244
FatI CATG 6 cut(s) 51, 57, 249, 532, 562, 587
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 159, 339, 491
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 159, 339, 491
FspBI CTAG 1 cut(s) 494
GluI GCNGC 3 cut(s) 159, 339, 491
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 126, 235
HgaI GACGC 1 cut(s) 631
Hin1II CATG 6 cut(s) 55, 61, 253, 536, 566, 591
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 1 cut(s) 246
HpaII CCGG 2 cut(s) 126, 235
Hpy188I TCNGA 2 cut(s) 70, 145
Hpy188III TCNNGA 6 cut(s) 14, 126, 257, 422, 451, 593
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 388, 569
HpyCH4V TGCA 4 cut(s) 158, 253, 338, 513
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 362, 510
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 6 cut(s) 55, 61, 253, 536, 566, 591
KflI GGGWCCC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 10, 29, 122, 212, 478
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 3 cut(s) 170, 350, 477
LweI GCATC 2 cut(s) 262, 332
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 1 cut(s) 619
MalI GATC 5 cut(s) 12, 31, 124, 214, 480
MboI GATC 5 cut(s) 10, 29, 122, 212, 478
MboII GAAGA 2 cut(s) 18, 86
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 4 cut(s) 216, 434, 572, 615
MnlI CCTC 4 cut(s) 408, 429, 480, 589
Mph1103I ATGCAT 1 cut(s) 255
MroI TCCGGA 1 cut(s) 125
MseI TTAA 3 cut(s) 359, 578, 640
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 3 cut(s) 161, 341, 490
MspI CCGG 2 cut(s) 126, 235
MspR9I CCNGG 3 cut(s) 235, 431, 635
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 2 cut(s) 431, 635
MwoI GCNNNNNNNGC 3 cut(s) 205, 362, 510
NciI CCSGG 1 cut(s) 235
NdeII GATC 5 cut(s) 10, 29, 122, 212, 478
NlaIII CATG 6 cut(s) 55, 61, 253, 536, 566, 591
NlaIV GGNNCC 6 cut(s) 67, 85, 124, 208, 232, 233
NmuCI GTSAC 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 3 cut(s) 61, 536, 591
PciI ACATGT 3 cut(s) 57, 532, 587
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 160, 340, 492
PpuMI RGGWCCY 1 cut(s) 231
PscI ACATGT 3 cut(s) 57, 532, 587
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 429, 633
PspGI CCWGG 2 cut(s) 429, 633
PspN4I GGNNCC 6 cut(s) 67, 85, 124, 208, 232, 233
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 3 cut(s) 206, 207, 231
PspPPI RGGWCCY 1 cut(s) 231
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 122
PvuII CAGCTG 2 cut(s) 161, 341
RsaI GTAC 2 cut(s) 331, 537
RsaNI GTAC 2 cut(s) 330, 536
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 359, 578, 640
SatI GCNGC 3 cut(s) 159, 339, 491
Sau3AI GATC 5 cut(s) 10, 29, 122, 212, 478
Sau96I GGNCC 3 cut(s) 206, 207, 231
ScrFI CCNGG 3 cut(s) 235, 431, 635
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 106, 157, 163, 281, 343, 407, 421, 509, 636
SfaNI GCATC 2 cut(s) 262, 332
SfcI CTRYAG 2 cut(s) 156, 176
SinI GGWCC 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 4 cut(s) 216, 434, 572, 615
SsiI CCGC 2 cut(s) 488, 610
SspMI CTAG 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 233, 429, 633
TaaI ACNGT 2 cut(s) 388, 569
TaqI TCGA 1 cut(s) 28
TasI AATT 4 cut(s) 216, 434, 572, 615
TatI WGTACW 1 cut(s) 535
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 3 cut(s) 359, 578, 640
Tru9I TTAA 3 cut(s) 359, 578, 640
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 158, 338, 490
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 3 cut(s) 68, 87, 238
VpaK11BI GGWCC 1 cut(s) 231
XceI RCATGY 3 cut(s) 61, 536, 591
XspI CTAG 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.