RLG00000036953

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000090
Physical Location & Seq
Forward (+)
86864146 .. 86867378
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036953

Sequence Viewer

Length: 708 bp
ATGATAAGGAAGCCTGCTACTGCAACAACAAGACCATCCAAATCTACTTCTCAGCTACCATCACAACCAGCCCTAAGAGAAACTTCTAATGCAGCACCCACAATAACACAATTGCCATTTGACGAGCCACAAGTCGATCAACATCCTATAGCTCACAACTCAAAGAATTCCTCTACCTCTGCTGAATTGAAAAAAACACGTGGCAAAACACCTAGGAAATGTATGATTGAGATGATTGCTAGCAATGGTAATAAGAAGGTGGAGATAATATTTGACCAGGAGCATTGGGTCCCAAATACTGAGTACAGCAATAAGAAGTTCACTACCGCTATAGGGATTGAGGTTCGAAGTCGAGTTCCGGTATGTTACCGCGGATGGAATAAGATTCCAGCAAATATTAAGAGGACACTACGAGAGGGATTGACGGATAAATGCGAGAAGAATTCAGCTAGTCGAAAGAGACAAAGGAGTACGCATTGTGGCGGAGCTATGCCTTTCATTCAACATGCTTTGAGGACAGCCAAGCTAATGACAATGTTGAAGAAGTTCCTGATGAATAGCCAAGGCTGCTTTGCTGATACAGAAAACATTGACATGAACATCGTAGTACCCAACAGTGAAGAAGATGATGTCTTTGGAAGAGATGAAGACGGTGTCCAAAACAATGGAGATAATTCGGAAACAGAGGATTTGGAGGAAGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

236

Amino Acids

26.39

Weight (kDa)

8.55

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 372
AciI CCGC 4 cut(s) 327, 370, 372, 483
AcsI RAATTY 2 cut(s) 166, 442
AcvI CACGTG 1 cut(s) 200
AfaI GTAC 3 cut(s) 305, 472, 609
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 3 cut(s) 190, 503, 541
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 5 cut(s) 55, 152, 449, 488, 526
AluI AGCT 5 cut(s) 55, 152, 449, 488, 526
Alw26I GTCTC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 92, 567
ApoI RAATTY 2 cut(s) 166, 442
Asp700I GAANNNNTTC 1 cut(s) 545
AspA2I CCTAGG 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 346
AsuNHI GCTAGC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 289
AvrII CCTAGG 1 cut(s) 212
BbrPI CACGTG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 104, 554
BccI CCATC 3 cut(s) 43, 67, 369
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 3 cut(s) 213, 240, 450
BfmI CTRYAG 2 cut(s) 147, 330
BisI GCNGC 2 cut(s) 93, 568
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 2 cut(s) 94, 569
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 290, 291
BmrFI CCNGG 1 cut(s) 278
BmtI GCTAGC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 654
Bpu14I TTCGAA 1 cut(s) 346
BsaAI YACGTR 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 212, 370, 562
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 212, 370, 562
BseGI GGATG 3 cut(s) 35, 142, 380
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 65, 291
BseXI GCAGC 2 cut(s) 104, 554
Bsh1236I CGCG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 4 cut(s) 327, 370, 372, 483
BspCNI CTCAG 2 cut(s) 64, 292
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 290, 291
BspOI GCTAGC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 212, 370, 562
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 212, 562
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 617, 653
Bst6I CTCTTC 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 15, 241
BstDEI CTNAG 3 cut(s) 51, 74, 300
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 3 cut(s) 35, 142, 380
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 147, 330
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 104, 554
BstV2I GAAGAC 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 665
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 3 cut(s) 35, 142, 380
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 15, 241
Cfr13I GGNCC 1 cut(s) 289
Cfr42I CCGCGG 1 cut(s) 373
Csp6I GTAC 3 cut(s) 304, 471, 608
CviAII CATG 2 cut(s) 506, 595
CviQI GTAC 3 cut(s) 304, 471, 608
DdeI CTNAG 3 cut(s) 51, 74, 300
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
EciI GGCGGA 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 212, 562
Eco47I GGWCC 1 cut(s) 289
Eco72I CACGTG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 289
EcoRI GAATTC 2 cut(s) 166, 442
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 212, 562
ErhI CCWWGG 2 cut(s) 212, 562
FaeI CATG 2 cut(s) 509, 598
FaiI YATR 8 cut(s) 149, 224, 332, 364, 491, 507, 596, 706
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 505, 594
Fnu4HI GCNGC 2 cut(s) 93, 568
FokI GGATG 3 cut(s) 22, 129, 387
Fsp4HI GCNGC 2 cut(s) 93, 568
FspBI CTAG 3 cut(s) 213, 240, 450
GluI GCNGC 2 cut(s) 93, 568
HapII CCGG 1 cut(s) 359
Hin1II CATG 2 cut(s) 509, 598
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 617, 653
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 23, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 3 cut(s) 51, 74, 300
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 509, 598
KflI GGGWCCC 1 cut(s) 289
KspI CCGCGG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 280, 485
LpnPI CCDG 7 cut(s) 27, 81, 263, 290, 372, 402, 563
Lsp1109I GCAGC 2 cut(s) 104, 554
MaeI CTAG 3 cut(s) 213, 240, 450
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 6 cut(s) 451, 553, 632, 635, 651, 659
MfeI CAATTG 1 cut(s) 110
MluCI AATT 5 cut(s) 110, 166, 185, 442, 673
MnlI CCTC 8 cut(s) 181, 187, 334, 396, 409, 507, 679, 688
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 278
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 567
NdeII GATC 1 cut(s) 136
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 509, 598
NlaIV GGNNCC 2 cut(s) 290, 291
NspI RCATGY 1 cut(s) 509
NspV TTCGAA 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 385
PflFI GACNNNGTC 1 cut(s) 653
PkrI GCNGC 2 cut(s) 94, 569
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 276
PspCI CACGTG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 290, 291
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 653
RsaI GTAC 3 cut(s) 305, 472, 609
RsaNI GTAC 3 cut(s) 304, 471, 608
RseI CAYNNNNRTG 1 cut(s) 593
SacII CCGCGG 1 cut(s) 373
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 93, 568
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 278
SfcI CTRYAG 2 cut(s) 147, 330
Sfr303I CCGCGG 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 346
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 593
Sse9I AATT 5 cut(s) 110, 166, 185, 442, 673
SsiI CCGC 4 cut(s) 327, 370, 372, 483
SspI AATATT 2 cut(s) 270, 397
SspMI CTAG 3 cut(s) 213, 240, 450
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 212, 562
TaaI ACNGT 2 cut(s) 617, 653
TaiI ACGT 1 cut(s) 202
TaqI TCGA 4 cut(s) 135, 346, 352, 454
TasI AATT 5 cut(s) 110, 166, 185, 442, 673
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 622
TseI GCWGC 2 cut(s) 92, 567
TspDTI ATGAA 4 cut(s) 487, 569, 611, 660
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 1 cut(s) 622
Tth111I GACNNNGTC 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 2 cut(s) 166, 442
XceI RCATGY 1 cut(s) 509
XmaJI CCTAGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 3 cut(s) 213, 240, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.