Rw3G020210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000090
Physical Location & Seq
Forward (+)
23610434 .. 23611934
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020210.1

Sequence Viewer

Length: 1092 bp
ATGATTGCTAGCAATGGCAACAAGAAGGTGGAGATAATATTTGACCAGGAGCATTGGGTCCCAAATACTGAGTACAGCAATAAGAAGTTCACTACCGCTATAGGGATTGAGGTTCGAAGTCGAGCTCCGGTATGTTACCGCGGATGGAATAAGATTTCAGGAGATATTAAGAGGACACTACGAGAGGGATTGACGGTACACTTTGACGTGGAAATAGAACATCCAAAAATTATCTATTTTGTGGATGATAAGATGCGCTCGGCGTATACTCAATTCAAGTGGAAGTTGCACGATCACTACCAAAAATGTGGGACATCTGTTCGAGGACGAGCCACACTTCCTCCACCTGATCTATGGGGTGAGAGATCGATAGAGGAGTGGCATTGGCTATGTGATGAACTCTACACCGATCCAAAATATATTGATAAATGCAAGAAGAATTCAACTAGCCGAAAGAGACAAAGGAGTACGCATCGTGGCGGAGCTATGCCTTTCATTCAACATGCTTTGAGGGCAGCCAAGGAGGGCAATCCTTTGTCTTTCATAGACAATTGGGCAGCTATGTATCAAGATTCAAATAGCAATTGGGTTAGTGATGCTGCACGTGATAAATATGATCGACTGAAAAATAAGAGAGAAGAGCATAAGGAGAAACTAACCCTAGAGGCACCAGAGGGTACTCCACCAGAATCTGTACAAGTTACTGCGCGTGATGAGATTCCAATCATGGCTGAAGAGTGTGGAAGGAAGGGAAAAAGAGTTCGTGGTTTAGGCTCGTTTCCTCGCATGGAGCTTCCAACTGTTACATCTTCAACAGCTGTGAGTTCTGAGATGAACGTAATGCAAGATAAAGTTAAGAAGCTTGAATCAACTGTGGACACTATGCGGTCACAAAATGCACAGCTAATGACAATGTTGAAGAAGTTCCTGATGAATAGCCAAGGCTGTTTTGCTGATACAGAAAACATTGACATGAATATCGTAGTACCCAACAGTGAAGAAATGATGTCTTTGGAAGAGATGAAGACGGTGTCCAAAACAATGGAGATAATTCTGAAACAGAGGATTTGGAGGAAGATTTGTGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

363

Amino Acids

42.01

Weight (kDa)

8.88

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 127 - 262 3e-13 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 266
AccII CGCG 2 cut(s) 141, 709
AciI CCGC 5 cut(s) 96, 139, 141, 480, 886
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 753
AcvI CACGTG 1 cut(s) 605
AfaI GTAC 6 cut(s) 74, 198, 469, 679, 696, 987
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 7 cut(s) 277, 444, 500, 576, 813, 866, 919
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
AluBI AGCT 7 cut(s) 125, 485, 560, 793, 818, 862, 904
AluI AGCT 7 cut(s) 125, 485, 560, 793, 818, 862, 904
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 1 cut(s) 404
AlwNI CAGNNNCTG 1 cut(s) 692
ApeKI GCWGC 3 cut(s) 515, 557, 599
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 258, 709
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 371
AsuII TTCGAA 1 cut(s) 115
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 127
BbrPI CACGTG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 1031
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 527, 569, 586
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 3 cut(s) 9, 447, 662
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 516, 558, 600
BlsI GCNGC 3 cut(s) 517, 559, 601
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 3 cut(s) 59, 60, 669
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 3 cut(s) 243, 481, 586
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 1031
Bpu14I TTCGAA 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 722
BsaJI CCNNGG 3 cut(s) 139, 519, 940
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 722
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 139, 519, 940
BseGI GGATG 3 cut(s) 149, 220, 250
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 60, 819
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 527, 569, 586
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 2 cut(s) 141, 709
BshNI GGYRCC 1 cut(s) 667
BshVI ATCGAT 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 44, 325
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 451
BsmFI GGGAC 2 cut(s) 44, 325
Bsp119I TTCGAA 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 5 cut(s) 292, 349, 365, 409, 616
BspACI CCGC 5 cut(s) 96, 139, 141, 480, 886
BspCNI CTCAG 2 cut(s) 61, 820
BspDI ATCGAT 1 cut(s) 368
BspFNI CGCG 2 cut(s) 141, 709
BspLI GGNNCC 3 cut(s) 59, 60, 669
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 139, 519, 940
BssMI GATC 5 cut(s) 292, 349, 365, 409, 616
BssNAI GTATAC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 519, 940
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 5 cut(s) 196, 802, 874, 995, 1030
Bst6I CTCTTC 3 cut(s) 633, 729, 1011
BstAUI TGTACA 1 cut(s) 694
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 69, 828
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 149, 220, 250
BstFNI CGCG 2 cut(s) 141, 709
BstHHI GCGC 2 cut(s) 258, 709
BstKTI GATC 5 cut(s) 295, 352, 368, 412, 619
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 5 cut(s) 292, 349, 365, 409, 616
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 2 cut(s) 141, 709
BstV1I GCAGC 3 cut(s) 527, 569, 586
BstV2I GAAGAC 1 cut(s) 1031
BstXI CCANNNNNNTGG 2 cut(s) 308, 1042
BstZ17I GTATAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 139
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 3 cut(s) 149, 220, 250
BtsIMutI CAGTG 1 cut(s) 1000
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 2 cut(s) 258, 709
Cfr13I GGNCC 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 368
Csp6I GTAC 6 cut(s) 73, 197, 468, 678, 695, 986
CspCI CAANNNNNGTGG 2 cut(s) 260, 295
CviAII CATG 4 cut(s) 503, 727, 787, 973
CviQI GTAC 6 cut(s) 73, 197, 468, 678, 695, 986
DdeI CTNAG 2 cut(s) 69, 828
DpnI GATC 5 cut(s) 294, 351, 367, 411, 618
DpnII GATC 5 cut(s) 292, 349, 365, 409, 616
Eam1104I CTCTTC 3 cut(s) 633, 729, 1011
EarI CTCTTC 3 cut(s) 633, 729, 1011
EciI GGCGGA 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 519, 940
Eco24I GRGCYC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 753
Eco72I CACGTG 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 519, 940
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 519, 940
FaeI CATG 4 cut(s) 506, 730, 790, 976
FaqI GGGAC 2 cut(s) 44, 325
FatI CATG 4 cut(s) 502, 726, 786, 972
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 3 cut(s) 516, 558, 600
FokI GGATG 3 cut(s) 156, 207, 257
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 3 cut(s) 516, 558, 600
FspBI CTAG 3 cut(s) 9, 447, 662
GlaI GCGC 2 cut(s) 257, 708
GluI GCNGC 3 cut(s) 516, 558, 600
HapII CCGG 1 cut(s) 128
HhaI GCGC 2 cut(s) 258, 709
Hin1II CATG 4 cut(s) 506, 730, 790, 976
Hin6I GCGC 2 cut(s) 256, 707
HinP1I GCGC 2 cut(s) 256, 707
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 5 cut(s) 572, 689, 718, 866, 1085
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 4 cut(s) 90, 199, 267, 877
Hpy188I TCNGA 2 cut(s) 829, 1056
Hpy188III TCNNGA 3 cut(s) 159, 569, 928
Hpy8I GTNNAC 4 cut(s) 90, 199, 267, 877
HpyAV CCTTC 3 cut(s) 19, 738, 742
HpyCH4III ACNGT 5 cut(s) 196, 802, 874, 995, 1030
HpyCH4IV ACGT 3 cut(s) 207, 604, 837
HpyCH4V TGCA 5 cut(s) 289, 432, 602, 844, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 2 cut(s) 69, 828
HpySE526I ACGT 3 cut(s) 207, 604, 837
Hsp92II CATG 4 cut(s) 506, 730, 790, 976
HspAI GCGC 2 cut(s) 256, 707
KflI GGGWCCC 1 cut(s) 58
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 5 cut(s) 292, 349, 365, 409, 616
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 4 cut(s) 49, 130, 482, 790
LpnPI CCDG 8 cut(s) 32, 59, 141, 144, 360, 684, 699, 941
Lsp1109I GCAGC 3 cut(s) 527, 569, 586
LweI GCATC 3 cut(s) 243, 481, 586
MaeI CTAG 3 cut(s) 9, 447, 662
MaeII ACGT 3 cut(s) 207, 604, 837
MaeIII GTNAC 4 cut(s) 134, 700, 802, 888
MalI GATC 5 cut(s) 294, 351, 367, 411, 618
MboI GATC 5 cut(s) 292, 349, 365, 409, 616
MboII GAAGA 9 cut(s) 448, 650, 746, 801, 931, 1010, 1028, 1036, 1087
MfeI CAATTG 2 cut(s) 550, 583
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 6 cut(s) 228, 272, 439, 550, 583, 1050
MmeI TCCRAC 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 2 cut(s) 168, 855
MslI CAYNNNNRTG 1 cut(s) 971
MspA1I CMGCKG 2 cut(s) 141, 818
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 2 cut(s) 550, 583
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 141, 709
MwoI GCNNNNNNNGC 1 cut(s) 512
NdeII GATC 5 cut(s) 292, 349, 365, 409, 616
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 4 cut(s) 506, 730, 790, 976
NlaIV GGNNCC 3 cut(s) 59, 60, 669
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 888
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 5 cut(s) 572, 689, 718, 866, 1085
PflFI GACNNNGTC 1 cut(s) 1030
PkrI GCNGC 3 cut(s) 517, 559, 601
PmaCI CACGTG 1 cut(s) 605
PmlI CACGTG 1 cut(s) 605
Ppu21I YACGTR 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 45
PspCI CACGTG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 59, 60, 669
PspPI GGNCC 1 cut(s) 58
PspPPI RGGWCCY 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 1030
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 6 cut(s) 74, 198, 469, 679, 696, 987
RsaNI GTAC 6 cut(s) 73, 197, 468, 678, 695, 986
RseI CAYNNNNRTG 1 cut(s) 971
SacI GAGCTC 1 cut(s) 127
SacII CCGCGG 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 2 cut(s) 168, 855
SatI GCNGC 3 cut(s) 516, 558, 600
Sau3AI GATC 5 cut(s) 292, 349, 365, 409, 616
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 3 cut(s) 243, 481, 586
SfcI CTRYAG 1 cut(s) 99
Sfr303I CCGCGG 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 142
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 971
Sse9I AATT 6 cut(s) 228, 272, 439, 550, 583, 1050
SsiI CCGC 5 cut(s) 96, 139, 141, 480, 886
SspI AATATT 1 cut(s) 39
SspMI CTAG 3 cut(s) 9, 447, 662
SstI GAGCTC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 519, 940
TaaI ACNGT 5 cut(s) 196, 802, 874, 995, 1030
TaiI ACGT 3 cut(s) 210, 607, 840
TaqI TCGA 5 cut(s) 115, 121, 322, 368, 619
TasI AATT 6 cut(s) 228, 272, 439, 550, 583, 1050
TatI WGTACW 2 cut(s) 72, 694
TfiI GAWTC 5 cut(s) 572, 689, 718, 866, 1085
Tru1I TTAA 2 cut(s) 168, 855
Tru9I TTAA 2 cut(s) 168, 855
TscAI CASTG 1 cut(s) 1000
TseFI GTSAC 1 cut(s) 888
TseI GCWGC 3 cut(s) 515, 557, 599
Tsp45I GTSAC 1 cut(s) 888
TspDTI ATGAA 8 cut(s) 411, 484, 532, 848, 947, 989, 1037, 1077
TspRI CASTG 1 cut(s) 1000
Tth111I GACNNNGTC 1 cut(s) 1030
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 3 cut(s) 9, 447, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.