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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 592 |
| Acc36I | ACCTGC | 1 cut(s) | 592 |
| Acc65I | GGTACC | 1 cut(s) | 293 |
| AccB1I | GGYRCC | 1 cut(s) | 293 |
| AciI | CCGC | 1 cut(s) | 324 |
| AclWI | GGATC | 1 cut(s) | 174 |
| AcoI | YGGCCR | 1 cut(s) | 465 |
| AcsI | RAATTY | 4 cut(s) | 147, 258, 445, 474 |
| AcuI | CTGAAG | 2 cut(s) | 50, 285 |
| AfaI | GTAC | 2 cut(s) | 295, 660 |
| AgsI | TTSAA | 5 cut(s) | 97, 144, 251, 301, 445 |
| AluBI | AGCT | 3 cut(s) | 15, 34, 634 |
| AluI | AGCT | 3 cut(s) | 15, 34, 634 |
| Alw21I | GWGCWC | 2 cut(s) | 488, 569 |
| Alw26I | GTCTC | 3 cut(s) | 284, 441, 742 |
| AlwI | GGATC | 1 cut(s) | 174 |
| Ama87I | CYCGRG | 3 cut(s) | 394, 481, 568 |
| AoxI | GGCC | 2 cut(s) | 465, 793 |
| ApeKI | GCWGC | 1 cut(s) | 587 |
| ApoI | RAATTY | 4 cut(s) | 147, 258, 445, 474 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 741, 773 |
| AseI | ATTAAT | 1 cut(s) | 654 |
| Asp718I | GGTACC | 1 cut(s) | 293 |
| AspS9I | GGNCC | 1 cut(s) | 398 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AvaI | CYCGRG | 3 cut(s) | 394, 481, 568 |
| AvaII | GGWCC | 1 cut(s) | 398 |
| BanI | GGYRCC | 1 cut(s) | 293 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 49, 81 |
| BbsI | GAAGAC | 2 cut(s) | 411, 733 |
| Bbv12I | GWGCWC | 2 cut(s) | 488, 569 |
| BbvI | GCAGC | 1 cut(s) | 574 |
| BccI | CCATC | 2 cut(s) | 351, 590 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BcoDI | GTCTC | 3 cut(s) | 284, 441, 742 |
| BfuAI | ACCTGC | 1 cut(s) | 592 |
| BisI | GCNGC | 1 cut(s) | 588 |
| BlsI | GCNGC | 1 cut(s) | 589 |
| Bme18I | GGWCC | 1 cut(s) | 398 |
| BmeT110I | CYCGRG | 3 cut(s) | 394, 481, 568 |
| BmgT120I | GGNCC | 1 cut(s) | 398 |
| BmiI | GGNNCC | 3 cut(s) | 295, 399, 549 |
| BoxI | GACNNNNGTC | 1 cut(s) | 733 |
| BpiI | GAAGAC | 2 cut(s) | 411, 733 |
| Bsa29I | ATCGAT | 2 cut(s) | 105, 121 |
| BsaI | GGTCTC | 1 cut(s) | 742 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| Bse3DI | GCAATG | 1 cut(s) | 698 |
| BseCI | ATCGAT | 2 cut(s) | 105, 121 |
| BseGI | GGATG | 1 cut(s) | 601 |
| BseMI | GCAATG | 1 cut(s) | 698 |
| BseMII | CTCAG | 1 cut(s) | 819 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseXI | GCAGC | 1 cut(s) | 574 |
| Bsh1285I | CGRYCG | 1 cut(s) | 734 |
| BshFI | GGCC | 2 cut(s) | 467, 795 |
| BshNI | GGYRCC | 1 cut(s) | 293 |
| BshVI | ATCGAT | 2 cut(s) | 105, 121 |
| BsiEI | CGRYCG | 1 cut(s) | 734 |
| BsiHKAI | GWGCWC | 2 cut(s) | 488, 569 |
| BsiHKCI | CYCGRG | 3 cut(s) | 394, 481, 568 |
| BsiSI | CCGG | 1 cut(s) | 468 |
| BslFI | GGGAC | 1 cut(s) | 411 |
| BsmAI | GTCTC | 3 cut(s) | 284, 441, 742 |
| BsmFI | GGGAC | 1 cut(s) | 411 |
| BsnI | GGCC | 2 cut(s) | 467, 795 |
| Bso31I | GGTCTC | 1 cut(s) | 742 |
| BsoBI | CYCGRG | 3 cut(s) | 394, 481, 568 |
| Bsp1286I | GDGCHC | 2 cut(s) | 488, 569 |
| Bsp143I | GATC | 4 cut(s) | 106, 179, 373, 731 |
| BspACI | CCGC | 1 cut(s) | 324 |
| BspANI | GGCC | 2 cut(s) | 467, 795 |
| BspCNI | CTCAG | 1 cut(s) | 818 |
| BspDI | ATCGAT | 2 cut(s) | 105, 121 |
| BspLI | GGNNCC | 3 cut(s) | 295, 399, 549 |
| BspMI | ACCTGC | 1 cut(s) | 592 |
| BspPI | GGATC | 1 cut(s) | 174 |
| BspT107I | GGYRCC | 1 cut(s) | 293 |
| BspTNI | GGTCTC | 1 cut(s) | 742 |
| BsrDI | GCAATG | 1 cut(s) | 698 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssMI | GATC | 4 cut(s) | 106, 179, 373, 731 |
| Bst6I | CTCTTC | 1 cut(s) | 92 |
| BstDEI | CTNAG | 2 cut(s) | 241, 805 |
| BstF5I | GGATG | 1 cut(s) | 601 |
| BstKTI | GATC | 4 cut(s) | 109, 182, 376, 734 |
| BstMAI | GTCTC | 3 cut(s) | 284, 441, 742 |
| BstMBI | GATC | 4 cut(s) | 106, 179, 373, 731 |
| BstMCI | CGRYCG | 1 cut(s) | 734 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 815 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 733 |
| BstV1I | GCAGC | 1 cut(s) | 574 |
| BstV2I | GAAGAC | 2 cut(s) | 411, 733 |
| Bsu15I | ATCGAT | 2 cut(s) | 105, 121 |
| BsuRI | GGCC | 2 cut(s) | 467, 795 |
| BsuTUI | ATCGAT | 2 cut(s) | 105, 121 |
| BtgZI | GCGATG | 1 cut(s) | 370 |
| BtsCI | GGATG | 1 cut(s) | 601 |
| BtsIMutI | CAGTG | 2 cut(s) | 126, 199 |
| BveI | ACCTGC | 1 cut(s) | 592 |
| Cfr13I | GGNCC | 1 cut(s) | 398 |
| ClaI | ATCGAT | 2 cut(s) | 105, 121 |
| Csp6I | GTAC | 2 cut(s) | 294, 659 |
| CviAII | CATG | 3 cut(s) | 209, 229, 717 |
| CviJI | RGCY | 8 cut(s) | 15, 34, 175, 467, 634, 666, 678, 795 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 34, 175, 467, 634, 666, 678, 795 |
| CviQI | GTAC | 2 cut(s) | 294, 659 |
| DdeI | CTNAG | 2 cut(s) | 241, 805 |
| DpnI | GATC | 4 cut(s) | 108, 181, 375, 733 |
| DpnII | GATC | 4 cut(s) | 106, 179, 373, 731 |
| EaeI | YGGCCR | 1 cut(s) | 465 |
| Eam1104I | CTCTTC | 1 cut(s) | 92 |
| EarI | CTCTTC | 1 cut(s) | 92 |
| Eco31I | GGTCTC | 1 cut(s) | 742 |
| Eco47I | GGWCC | 1 cut(s) | 398 |
| Eco57I | CTGAAG | 2 cut(s) | 50, 285 |
| Eco88I | CYCGRG | 3 cut(s) | 394, 481, 568 |
| EcoRI | GAATTC | 1 cut(s) | 474 |
| FaeI | CATG | 3 cut(s) | 212, 232, 720 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 403, 435 |
| FaqI | GGGAC | 1 cut(s) | 411 |
| FatI | CATG | 3 cut(s) | 208, 228, 716 |
| Fnu4HI | GCNGC | 1 cut(s) | 588 |
| FokI | GGATG | 1 cut(s) | 608 |
| Fsp4HI | GCNGC | 1 cut(s) | 588 |
| GluI | GCNGC | 1 cut(s) | 588 |
| HaeIII | GGCC | 2 cut(s) | 467, 795 |
| HapII | CCGG | 1 cut(s) | 468 |
| Hin1II | CATG | 3 cut(s) | 212, 232, 720 |
| HindIII | AAGCTT | 1 cut(s) | 632 |
| HinfI | GANTC | 4 cut(s) | 123, 331, 403, 509 |
| HpaII | CCGG | 1 cut(s) | 468 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 1 cut(s) | 59 |
| Hpy188I | TCNGA | 1 cut(s) | 154 |
| Hpy188III | TCNNGA | 5 cut(s) | 263, 396, 570, 593, 709 |
| Hpy8I | GTNNAC | 1 cut(s) | 59 |
| HpyAV | CCTTC | 5 cut(s) | 75, 150, 230, 245, 518 |
| HpyCH4V | TGCA | 2 cut(s) | 87, 557 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 815 |
| HpyF3I | CTNAG | 2 cut(s) | 241, 805 |
| Hsp92II | CATG | 3 cut(s) | 212, 232, 720 |
| KpnI | GGTACC | 1 cut(s) | 297 |
| Kzo9I | GATC | 4 cut(s) | 106, 179, 373, 731 |
| LpnPI | CCDG | 8 cut(s) | 75, 114, 276, 481, 578, 597, 660, 799 |
| Lsp1109I | GCAGC | 1 cut(s) | 574 |
| MalI | GATC | 4 cut(s) | 108, 181, 375, 733 |
| MboI | GATC | 4 cut(s) | 106, 179, 373, 731 |
| MboII | GAAGA | 7 cut(s) | 109, 278, 352, 411, 483, 629, 738 |
| MhlI | GDGCHC | 2 cut(s) | 488, 569 |
| MluCI | AATT | 7 cut(s) | 82, 147, 158, 258, 316, 445, 474 |
| MmeI | TCCRAC | 3 cut(s) | 207, 265, 342 |
| MnlI | CCTC | 4 cut(s) | 346, 417, 490, 561 |
| MseI | TTAA | 4 cut(s) | 164, 320, 425, 654 |
| MslI | CAYNNNNRTG | 1 cut(s) | 538 |
| MspI | CCGG | 1 cut(s) | 468 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 815 |
| NdeII | GATC | 4 cut(s) | 106, 179, 373, 731 |
| NlaIII | CATG | 3 cut(s) | 212, 232, 720 |
| NlaIV | GGNNCC | 3 cut(s) | 295, 399, 549 |
| PaeR7I | CTCGAG | 1 cut(s) | 481 |
| PaqCI | CACCTGC | 1 cut(s) | 592 |
| PfeI | GAWTC | 4 cut(s) | 123, 331, 403, 509 |
| PkrI | GCNGC | 1 cut(s) | 589 |
| Ple19I | CGATCG | 1 cut(s) | 734 |
| PshAI | GACNNNNGTC | 1 cut(s) | 733 |
| PshBI | ATTAAT | 1 cut(s) | 654 |
| PspN4I | GGNNCC | 3 cut(s) | 295, 399, 549 |
| PspPI | GGNCC | 1 cut(s) | 398 |
| PspXI | VCTCGAGB | 1 cut(s) | 481 |
| PvuI | CGATCG | 1 cut(s) | 734 |
| RsaI | GTAC | 2 cut(s) | 295, 660 |
| RsaNI | GTAC | 2 cut(s) | 294, 659 |
| RseI | CAYNNNNRTG | 1 cut(s) | 538 |
| SaqAI | TTAA | 4 cut(s) | 164, 320, 425, 654 |
| SatI | GCNGC | 1 cut(s) | 588 |
| Sau3AI | GATC | 4 cut(s) | 106, 179, 373, 731 |
| Sau96I | GGNCC | 1 cut(s) | 398 |
| SduI | GDGCHC | 2 cut(s) | 488, 569 |
| SetI | ASST | 8 cut(s) | 17, 36, 142, 249, 256, 299, 586, 636 |
| Sfr274I | CTCGAG | 1 cut(s) | 481 |
| SinI | GGWCC | 1 cut(s) | 398 |
| SlaI | CTCGAG | 1 cut(s) | 481 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 538 |
| SmlI | CTYRAG | 1 cut(s) | 481 |
| SmoI | CTYRAG | 1 cut(s) | 481 |
| Sse9I | AATT | 7 cut(s) | 82, 147, 158, 258, 316, 445, 474 |
| SsiI | CCGC | 1 cut(s) | 324 |
| TaqI | TCGA | 4 cut(s) | 105, 121, 338, 482 |
| TaqII | GACCGA | 1 cut(s) | 415 |
| TasI | AATT | 7 cut(s) | 82, 147, 158, 258, 316, 445, 474 |
| TatI | WGTACW | 1 cut(s) | 658 |
| TfiI | GAWTC | 4 cut(s) | 123, 331, 403, 509 |
| Tru1I | TTAA | 4 cut(s) | 164, 320, 425, 654 |
| Tru9I | TTAA | 4 cut(s) | 164, 320, 425, 654 |
| TscAI | CASTG | 2 cut(s) | 133, 199 |
| TseI | GCWGC | 1 cut(s) | 587 |
| TspDTI | ATGAA | 5 cut(s) | 171, 501, 630, 642, 790 |
| TspRI | CASTG | 2 cut(s) | 133, 199 |
| VpaK11BI | GGWCC | 1 cut(s) | 398 |
| VspI | ATTAAT | 1 cut(s) | 654 |
| XapI | RAATTY | 4 cut(s) | 147, 258, 445, 474 |
| XhoI | CTCGAG | 1 cut(s) | 481 |