Rh7DG233500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000090
Physical Location & Seq
Reverse (-)
23224184 .. 23230754
6571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG233500.1

Sequence Viewer

Length: 1224 bp
ATGTTACCACCATCGTTCTTCTGGGTCGCCCTTCCTGTACTTATAATTCTACATCCTTTGTATCCATTGCTCAGTAATGTGTTCAAGCGCATGGTCTACTCTGTTTATCACATTCTTCGAGCCATCCCTACTTTTATTCTTATTCGCACAACCACCCAATATAACGGAAATGGAGATCAACCTCAAATACTTGAAGTTGATGAAGTGATTATTAATATTGAAGAGCAAGTTCATTCATGTGTTGCTAGTGGGGGAAAAGTGCTAATTCCTTCATTTGCTTTGGGTAGAGCTCAGATGGCTCAAGGGAGAGGGAAGCAGATAAGGAAGGTTCAAAAAGTGCCTCCACCTCAACAGCCAGCTACAACAACTATGGCTAATAATGTGTCAGCTAGACCTACTGTGCGTGAGAATGTGCCAGCAACGCCAACTATGACAGATAATGTGTTTGCTACCCCTACTGTGCGTAAAAATGTGCCAGCAACAACTACTGTTCATGCTCATGTTAGTCATGTACGAGCAAGAGCTAACACGCCACCAAGAGCTAATTTGCCACCACAAACCAACGTGCCACTACCAGCTAACGTGGCTCCATCAATTCATCAACTGCCTACCCAACAAGAAATCCCTTTTGTGGGCATTGGCATGAAAAGGAAGCGTGGTAAATCATGTGGTAAAGCTCTTCAGGAGCTTATAAAGGCTAATGGTGGACCTCTGCGTGTTGACTTTCATCCGACCATTCATGTCCCTTCTGATGACACAATTTCTAAAATGTTTACTTCTGAGATAGGAATTACTGTTCTGGGTGGGGCACCAGTATGCAAATATGGCTGGTCTGATATTGATGAAGAAGATGATAAGAGGTTGCTAAGAGAGGAATTGCGGGTGTTCTTTACGGTGGACTTAATTGATCCAGCTGTTGTTGCGTATGTGGATTCCAAAATGTCTACTGCCTACTCCCAATTCAAGACTCGACTAAAGAAGGAATGGAAAGCATTTGGCTCACCTGAGCTAGGAAGAGCAAACTTGCCTAGTGCAGATTTATGGAATGGGAGACCTGTCTCACATTGGCATTGGCTTTGTGTCAACAAATACACCAACCAGTCTTGCATTGAGATTGCGGAAAAGAATTCTGCTAACAGGTATATGCAACAACATACTCACAGAGCGGGTGCACGGCCATACGTGCAACATGCTTTGGTGGCCTCTAAGGTAAACATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

407

Amino Acids

45.29

Weight (kDa)

9.7

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 44, 692
AccB1I GGYRCC 1 cut(s) 808
AccBSI CCGCTC 1 cut(s) 1166
AccI GTMKAC 2 cut(s) 96, 944
AciI CCGC 3 cut(s) 880, 1118, 1166
AclWI GGATC 1 cut(s) 902
AcoI YGGCCR 1 cut(s) 1175
AcsI RAATTY 1 cut(s) 1126
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 2 cut(s) 39, 513
AfiI CCNNNNNNNGG 3 cut(s) 631, 632, 1010
AgsI TTSAA 5 cut(s) 85, 194, 221, 332, 964
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
Alw21I GWGCWC 2 cut(s) 292, 1174
Alw26I GTCTC 2 cut(s) 1045, 1063
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 1 cut(s) 902
AoxI GGCC 2 cut(s) 1175, 1200
ApaLI GTGCAC 1 cut(s) 1170
ApoI RAATTY 1 cut(s) 1126
AseI ATTAAT 1 cut(s) 213
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 707
AsuHPI GGTGA 1 cut(s) 993
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 2 cut(s) 811, 1174
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 292, 1174
BccI CCATC 4 cut(s) 19, 131, 289, 598
BceAI ACGGC 1 cut(s) 1190
BciVI GTATCC 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 1045, 1063
BfaI CTAG 4 cut(s) 246, 390, 1010, 1029
BfuI GTATCC 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 2 cut(s) 588, 810
Bpu10I CCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 1183
BsaI GGTCTC 1 cut(s) 1045
Bsc4I CCNNNNNNNGG 3 cut(s) 631, 632, 1010
Bse1I ACTGG 2 cut(s) 812, 1099
Bse3DI GCAATG 1 cut(s) 65
BseGI GGATG 3 cut(s) 52, 123, 727
BseLI CCNNNNNNNGG 3 cut(s) 631, 632, 1010
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 4 cut(s) 85, 305, 771, 996
BseNI ACTGG 2 cut(s) 812, 1099
BseSI GKGCMC 2 cut(s) 811, 1174
BsgI GTGCAG 1 cut(s) 1053
BshFI GGCC 2 cut(s) 1177, 1202
BshNI GGYRCC 1 cut(s) 808
BsiHKAI GWGCWC 2 cut(s) 292, 1174
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 631, 632, 1010
BsmAI GTCTC 2 cut(s) 1045, 1063
BsmFI GGGAC 1 cut(s) 728
BsnI GGCC 2 cut(s) 1177, 1202
Bso31I GGTCTC 1 cut(s) 1045
Bsp1286I GDGCHC 3 cut(s) 292, 811, 1174
Bsp143I GATC 2 cut(s) 175, 907
BspACI CCGC 3 cut(s) 880, 1118, 1166
BspANI GGCC 2 cut(s) 1177, 1202
BspCNI CTCAG 4 cut(s) 84, 304, 772, 997
BspLI GGNNCC 2 cut(s) 588, 810
BspPI GGATC 1 cut(s) 902
BspQI GCTCTTC 3 cut(s) 216, 684, 1009
BspT107I GGYRCC 1 cut(s) 808
BspTNI GGTCTC 1 cut(s) 1045
BsrBI CCGCTC 1 cut(s) 1166
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 2 cut(s) 812, 1099
BssMI GATC 2 cut(s) 175, 907
Bst4CI ACNGT 5 cut(s) 400, 460, 490, 796, 895
Bst6I CTCTTC 3 cut(s) 216, 684, 1009
BstBAI YACGTR 1 cut(s) 1183
BstC8I GCNNGC 3 cut(s) 357, 417, 477
BstDEI CTNAG 6 cut(s) 71, 291, 780, 866, 1005, 1206
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 3 cut(s) 52, 123, 727
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 178, 910
BstMAI GTCTC 2 cut(s) 1045, 1063
BstMBI GATC 2 cut(s) 175, 907
BstMWI GCNNNNNNNGC 7 cut(s) 296, 421, 584, 825, 920, 1183, 1199
BstNSI RCATGY 1 cut(s) 1193
BstSLI GKGCMC 2 cut(s) 811, 1174
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 2 cut(s) 1177, 1202
BtsCI GGATG 3 cut(s) 52, 123, 727
Cac8I GCNNGC 3 cut(s) 357, 417, 477
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 707
Csp6I GTAC 2 cut(s) 38, 512
CviQI GTAC 2 cut(s) 38, 512
DdeI CTNAG 6 cut(s) 71, 291, 780, 866, 1005, 1206
DpnI GATC 2 cut(s) 177, 909
DpnII GATC 2 cut(s) 175, 907
EaeI YGGCCR 1 cut(s) 1175
Eam1104I CTCTTC 3 cut(s) 216, 684, 1009
EarI CTCTTC 3 cut(s) 216, 684, 1009
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoRI GAATTC 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 292
FaqI GGGAC 1 cut(s) 728
FauI CCCGC 2 cut(s) 873, 1159
FblI GTMKAC 2 cut(s) 96, 944
FokI GGATG 3 cut(s) 39, 110, 714
FriOI GRGCYC 1 cut(s) 292
FspBI CTAG 4 cut(s) 246, 390, 1010, 1029
GlaI GCGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 1177, 1202
HhaI GCGC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 2 cut(s) 721, 1084
HindII GTYRAC 2 cut(s) 721, 1084
HinfI GANTC 2 cut(s) 932, 967
HphI GGTGA 1 cut(s) 993
Hpy166II GTNNAC 9 cut(s) 97, 707, 721, 774, 898, 945, 1084, 1172, 1213
Hpy188I TCNGA 5 cut(s) 294, 732, 751, 781, 835
Hpy188III TCNNGA 2 cut(s) 683, 964
Hpy8I GTNNAC 9 cut(s) 97, 707, 721, 774, 898, 945, 1084, 1172, 1213
HpyAV CCTTC 5 cut(s) 41, 279, 319, 756, 973
HpyCH4III ACNGT 5 cut(s) 400, 460, 490, 796, 895
HpyCH4IV ACGT 3 cut(s) 564, 582, 1182
HpyCH4V TGCA 6 cut(s) 819, 1034, 1107, 1147, 1172, 1186
HpyF10VI GCNNNNNNNGC 7 cut(s) 296, 421, 584, 825, 920, 1183, 1199
HpyF3I CTNAG 6 cut(s) 71, 291, 780, 866, 1005, 1206
HpySE526I ACGT 3 cut(s) 564, 582, 1182
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 175, 907
LguI GCTCTTC 3 cut(s) 216, 684, 1009
LmnI GCTCC 2 cut(s) 592, 685
MaeI CTAG 4 cut(s) 246, 390, 1010, 1029
MaeII ACGT 3 cut(s) 564, 582, 1182
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 177, 909
MbiI CCGCTC 1 cut(s) 1166
MboI GATC 2 cut(s) 175, 907
MboII GAAGA 7 cut(s) 10, 107, 233, 671, 857, 860, 1026
MhlI GDGCHC 3 cut(s) 292, 811, 1174
MlyI GAGTC 1 cut(s) 961
MmeI TCCRAC 1 cut(s) 755
MnlI CCTC 8 cut(s) 192, 302, 351, 357, 720, 852, 865, 1213
MseI TTAA 2 cut(s) 213, 902
MslI CAYNNNNRTG 4 cut(s) 237, 498, 641, 814
MspA1I CMGCKG 1 cut(s) 914
MwoI GCNNNNNNNGC 7 cut(s) 296, 421, 584, 825, 920, 1183, 1199
NdeII GATC 2 cut(s) 175, 907
NlaIV GGNNCC 2 cut(s) 588, 810
NspI RCATGY 1 cut(s) 1193
PciSI GCTCTTC 3 cut(s) 216, 684, 1009
PfeI GAWTC 1 cut(s) 932
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
Ppu21I YACGTR 1 cut(s) 1183
PshBI ATTAAT 1 cut(s) 213
PsiI TTATAA 2 cut(s) 44, 692
Psp124BI GAGCTC 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 588, 810
PspPI GGNCC 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 2 cut(s) 39, 513
RsaNI GTAC 2 cut(s) 38, 512
RseI CAYNNNNRTG 4 cut(s) 237, 498, 641, 814
SacI GAGCTC 1 cut(s) 292
SapI GCTCTTC 3 cut(s) 216, 684, 1009
SaqAI TTAA 2 cut(s) 213, 902
Sau3AI GATC 2 cut(s) 175, 907
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 1 cut(s) 961
SduI GDGCHC 3 cut(s) 292, 811, 1174
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 4 cut(s) 237, 498, 641, 814
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
SsiI CCGC 3 cut(s) 880, 1118, 1166
SspI AATATT 1 cut(s) 217
SspMI CTAG 4 cut(s) 246, 390, 1010, 1029
SstI GAGCTC 1 cut(s) 292
TaaI ACNGT 5 cut(s) 400, 460, 490, 796, 895
TaiI ACGT 3 cut(s) 567, 585, 1185
TaqI TCGA 2 cut(s) 118, 970
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 1 cut(s) 932
Tru1I TTAA 2 cut(s) 213, 902
Tru9I TTAA 2 cut(s) 213, 902
TspGWI ACGGA 1 cut(s) 180
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 707
VspI ATTAAT 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 1 cut(s) 1126
XceI RCATGY 1 cut(s) 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmiI GTMKAC 2 cut(s) 96, 944
XspI CTAG 4 cut(s) 246, 390, 1010, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.