Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 800 |
| Acc65I | GGTACC | 1 cut(s) | 154 |
| AccB1I | GGYRCC | 2 cut(s) | 48, 154 |
| AciI | CCGC | 1 cut(s) | 365 |
| AclWI | GGATC | 1 cut(s) | 416 |
| AcsI | RAATTY | 1 cut(s) | 712 |
| AcuI | CTGAAG | 2 cut(s) | 438, 692 |
| AfaI | GTAC | 2 cut(s) | 156, 888 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 151, 268, 450 |
| AgsI | TTSAA | 9 cut(s) | 125, 164, 301, 538, 571, 584, 640, 873, 928 |
| AluBI | AGCT | 6 cut(s) | 36, 76, 337, 752, 841, 876 |
| AluI | AGCT | 6 cut(s) | 36, 76, 337, 752, 841, 876 |
| Alw21I | GWGCWC | 1 cut(s) | 339 |
| Alw26I | GTCTC | 1 cut(s) | 337 |
| AlwI | GGATC | 1 cut(s) | 416 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 599 |
| AoxI | GGCC | 4 cut(s) | 303, 361, 719, 913 |
| ApoI | RAATTY | 1 cut(s) | 712 |
| Asp718I | GGTACC | 1 cut(s) | 154 |
| AspS9I | GGNCC | 4 cut(s) | 362, 441, 719, 914 |
| AsuHPI | GGTGA | 3 cut(s) | 373, 522, 615 |
| AvaII | GGWCC | 1 cut(s) | 441 |
| BanI | GGYRCC | 2 cut(s) | 48, 154 |
| BanII | GRGCYC | 1 cut(s) | 339 |
| BbsI | GAAGAC | 2 cut(s) | 324, 519 |
| Bbv12I | GWGCWC | 1 cut(s) | 339 |
| BccI | CCATC | 3 cut(s) | 676, 763, 782 |
| BcoDI | GTCTC | 1 cut(s) | 337 |
| BfaI | CTAG | 4 cut(s) | 255, 432, 708, 911 |
| BglII | AGATCT | 1 cut(s) | 617 |
| Bme18I | GGWCC | 1 cut(s) | 441 |
| BmgT120I | GGNCC | 4 cut(s) | 362, 441, 719, 914 |
| BmiI | GGNNCC | 5 cut(s) | 50, 156, 280, 442, 720 |
| BmrI | ACTGGG | 1 cut(s) | 284 |
| BmsI | GCATC | 2 cut(s) | 643, 713 |
| BmuI | ACTGGG | 1 cut(s) | 284 |
| BpiI | GAAGAC | 2 cut(s) | 324, 519 |
| BpuEI | CTTGAG | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 4 cut(s) | 324, 368, 562, 882 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 445, 475 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 151, 268, 450 |
| Bse1I | ACTGG | 2 cut(s) | 279, 900 |
| BseDI | CCNNGG | 4 cut(s) | 324, 368, 562, 882 |
| BseGI | GGATG | 1 cut(s) | 658 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 151, 268, 450 |
| BseMII | CTCAG | 3 cut(s) | 213, 591, 605 |
| BseNI | ACTGG | 2 cut(s) | 279, 900 |
| BseRI | GAGGAG | 3 cut(s) | 44, 674, 897 |
| BsgI | GTGCAG | 1 cut(s) | 332 |
| BshFI | GGCC | 4 cut(s) | 305, 363, 721, 915 |
| BshNI | GGYRCC | 2 cut(s) | 48, 154 |
| BsiHKAI | GWGCWC | 1 cut(s) | 339 |
| BslFI | GGGAC | 1 cut(s) | 787 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 151, 268, 450 |
| BsmAI | GTCTC | 1 cut(s) | 337 |
| BsmFI | GGGAC | 1 cut(s) | 787 |
| BsnI | GGCC | 4 cut(s) | 305, 363, 721, 915 |
| Bsp1286I | GDGCHC | 1 cut(s) | 339 |
| Bsp143I | GATC | 3 cut(s) | 421, 463, 617 |
| Bsp19I | CCATGG | 1 cut(s) | 562 |
| BspACI | CCGC | 1 cut(s) | 365 |
| BspANI | GGCC | 4 cut(s) | 305, 363, 721, 915 |
| BspCNI | CTCAG | 3 cut(s) | 214, 592, 606 |
| BspHI | TCATGA | 1 cut(s) | 339 |
| BspLI | GGNNCC | 5 cut(s) | 50, 156, 280, 442, 720 |
| BspPI | GGATC | 1 cut(s) | 416 |
| BspQI | GCTCTTC | 1 cut(s) | 883 |
| BspT107I | GGYRCC | 2 cut(s) | 48, 154 |
| BsrI | ACTGG | 2 cut(s) | 279, 900 |
| BssECI | CCNNGG | 4 cut(s) | 324, 368, 562, 882 |
| BssMI | GATC | 3 cut(s) | 421, 463, 617 |
| BssT1I | CCWWGG | 3 cut(s) | 368, 562, 882 |
| Bst4CI | ACNGT | 2 cut(s) | 325, 864 |
| Bst6I | CTCTTC | 4 cut(s) | 383, 430, 668, 883 |
| BstC8I | GCNNGC | 3 cut(s) | 361, 365, 723 |
| BstDEI | CTNAG | 3 cut(s) | 222, 600, 614 |
| BstDSI | CCRYGG | 2 cut(s) | 324, 562 |
| BstF5I | GGATG | 1 cut(s) | 658 |
| BstKTI | GATC | 3 cut(s) | 424, 466, 620 |
| BstMAI | GTCTC | 1 cut(s) | 337 |
| BstMBI | GATC | 3 cut(s) | 421, 463, 617 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstV2I | GAAGAC | 2 cut(s) | 324, 519 |
| BstX2I | RGATCY | 2 cut(s) | 421, 617 |
| BstYI | RGATCY | 2 cut(s) | 421, 617 |
| BsuRI | GGCC | 4 cut(s) | 305, 363, 721, 915 |
| BtgI | CCRYGG | 2 cut(s) | 324, 562 |
| BtsCI | GGATG | 1 cut(s) | 658 |
| BtsIMutI | CAGTG | 1 cut(s) | 893 |
| Cac8I | GCNNGC | 3 cut(s) | 361, 365, 723 |
| CaiI | CAGNNNCTG | 1 cut(s) | 599 |
| CciI | TCATGA | 1 cut(s) | 339 |
| Cfr13I | GGNCC | 4 cut(s) | 362, 441, 719, 914 |
| Csp6I | GTAC | 2 cut(s) | 155, 887 |
| CviAII | CATG | 2 cut(s) | 340, 563 |
| CviQI | GTAC | 2 cut(s) | 155, 887 |
| DdeI | CTNAG | 3 cut(s) | 222, 600, 614 |
| DpnI | GATC | 3 cut(s) | 423, 465, 619 |
| DpnII | GATC | 3 cut(s) | 421, 463, 617 |
| Eam1104I | CTCTTC | 4 cut(s) | 383, 430, 668, 883 |
| EarI | CTCTTC | 4 cut(s) | 383, 430, 668, 883 |
| Ecl136II | GAGCTC | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 3 cut(s) | 368, 562, 882 |
| Eco24I | GRGCYC | 1 cut(s) | 339 |
| Eco47I | GGWCC | 1 cut(s) | 441 |
| Eco53kI | GAGCTC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 2 cut(s) | 438, 692 |
| EcoICRI | GAGCTC | 1 cut(s) | 337 |
| EcoO109I | RGGNCCY | 2 cut(s) | 719, 914 |
| EcoT14I | CCWWGG | 3 cut(s) | 368, 562, 882 |
| EcoT38I | GRGCYC | 1 cut(s) | 339 |
| ErhI | CCWWGG | 3 cut(s) | 368, 562, 882 |
| FaeI | CATG | 2 cut(s) | 343, 566 |
| FaiI | YATR | 7 cut(s) | 91, 312, 341, 386, 564, 800, 846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 143, 175 |
| FaqI | GGGAC | 1 cut(s) | 787 |
| FatI | CATG | 2 cut(s) | 339, 562 |
| FauI | CCCGC | 1 cut(s) | 372 |
| FokI | GGATG | 1 cut(s) | 665 |
| FriOI | GRGCYC | 1 cut(s) | 339 |
| FspBI | CTAG | 4 cut(s) | 255, 432, 708, 911 |
| HaeIII | GGCC | 4 cut(s) | 305, 363, 721, 915 |
| Hin1II | CATG | 2 cut(s) | 343, 566 |
| HphI | GGTGA | 3 cut(s) | 373, 522, 615 |
| Hpy188I | TCNGA | 5 cut(s) | 223, 334, 418, 468, 834 |
| Hpy188III | TCNNGA | 6 cut(s) | 340, 432, 444, 545, 708, 734 |
| HpyAV | CCTTC | 3 cut(s) | 295, 519, 879 |
| HpyCH4III | ACNGT | 2 cut(s) | 325, 864 |
| HpyCH4V | TGCA | 3 cut(s) | 196, 349, 656 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 3 cut(s) | 222, 600, 614 |
| Hsp92II | CATG | 2 cut(s) | 343, 566 |
| KpnI | GGTACC | 1 cut(s) | 158 |
| Kzo9I | GATC | 3 cut(s) | 421, 463, 617 |
| LguI | GCTCTTC | 1 cut(s) | 883 |
| LmnI | GCTCC | 1 cut(s) | 757 |
| LweI | GCATC | 2 cut(s) | 643, 713 |
| MaeI | CTAG | 4 cut(s) | 255, 432, 708, 911 |
| MaeIII | GTNAC | 1 cut(s) | 257 |
| MalI | GATC | 3 cut(s) | 423, 465, 619 |
| MboI | GATC | 3 cut(s) | 421, 463, 617 |
| MflI | RGATCY | 2 cut(s) | 421, 617 |
| MhlI | GDGCHC | 1 cut(s) | 339 |
| MluCI | AATT | 7 cut(s) | 133, 164, 187, 250, 307, 712, 923 |
| MlyI | GAGTC | 3 cut(s) | 542, 798, 838 |
| MseI | TTAA | 4 cut(s) | 177, 521, 647, 937 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NcoI | CCATGG | 1 cut(s) | 562 |
| NdeII | GATC | 3 cut(s) | 421, 463, 617 |
| NlaIII | CATG | 2 cut(s) | 343, 566 |
| NlaIV | GGNNCC | 5 cut(s) | 50, 156, 280, 442, 720 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| PagI | TCATGA | 1 cut(s) | 339 |
| PciSI | GCTCTTC | 1 cut(s) | 883 |
| PfeI | GAWTC | 7 cut(s) | 105, 290, 329, 413, 567, 584, 928 |
| PleI | GAGTC | 3 cut(s) | 542, 798, 837 |
| PpsI | GAGTC | 3 cut(s) | 542, 798, 837 |
| PsiI | TTATAA | 1 cut(s) | 800 |
| Psp124BI | GAGCTC | 1 cut(s) | 339 |
| PspN4I | GGNNCC | 5 cut(s) | 50, 156, 280, 442, 720 |
| PspPI | GGNCC | 4 cut(s) | 362, 441, 719, 914 |
| PstNI | CAGNNNCTG | 1 cut(s) | 599 |
| PsuI | RGATCY | 2 cut(s) | 421, 617 |
| RsaI | GTAC | 2 cut(s) | 156, 888 |
| RsaNI | GTAC | 2 cut(s) | 155, 887 |
| SacI | GAGCTC | 1 cut(s) | 339 |
| SapI | GCTCTTC | 1 cut(s) | 883 |
| SaqAI | TTAA | 4 cut(s) | 177, 521, 647, 937 |
| Sau3AI | GATC | 3 cut(s) | 421, 463, 617 |
| Sau96I | GGNCC | 4 cut(s) | 362, 441, 719, 914 |
| SchI | GAGTC | 3 cut(s) | 542, 798, 838 |
| SduI | GDGCHC | 1 cut(s) | 339 |
| SfaNI | GCATC | 2 cut(s) | 643, 713 |
| SinI | GGWCC | 1 cut(s) | 441 |
| SmlI | CTYRAG | 1 cut(s) | 31 |
| SmoI | CTYRAG | 1 cut(s) | 31 |
| Sse9I | AATT | 7 cut(s) | 133, 164, 187, 250, 307, 712, 923 |
| SsiI | CCGC | 1 cut(s) | 365 |
| SspMI | CTAG | 4 cut(s) | 255, 432, 708, 911 |
| SstI | GAGCTC | 1 cut(s) | 339 |
| StyI | CCWWGG | 3 cut(s) | 368, 562, 882 |
| TaaI | ACNGT | 2 cut(s) | 325, 864 |
| TaqI | TCGA | 1 cut(s) | 764 |
| TasI | AATT | 7 cut(s) | 133, 164, 187, 250, 307, 712, 923 |
| TfiI | GAWTC | 7 cut(s) | 105, 290, 329, 413, 567, 584, 928 |
| Tru1I | TTAA | 4 cut(s) | 177, 521, 647, 937 |
| Tru9I | TTAA | 4 cut(s) | 177, 521, 647, 937 |
| TscAI | CASTG | 1 cut(s) | 900 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 3 cut(s) | 620, 833, 891 |
| TspRI | CASTG | 1 cut(s) | 900 |
| VpaK11BI | GGWCC | 1 cut(s) | 441 |
| XapI | RAATTY | 1 cut(s) | 712 |
| XbaI | TCTAGA | 2 cut(s) | 431, 707 |
| XspI | CTAG | 4 cut(s) | 255, 432, 708, 911 |