Rh1DG025200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000090
Physical Location & Seq
Forward (+)
3954894 .. 3960503
5610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG025200.1

Sequence Viewer

Length: 282 bp
ATGCATCAACATAGAGGCAACAATGGTGGTGTTTGGATCAATGAAGAAGCAGAGAAGACGGGGAAAAAGCTGACTGGAGAGTTCATCAAAACCAAGCAACAGTTGGCTGATTCTGAGGGTACCCCATTTGAGGATGTTATAGTGCCTATCCCTGTGCAATTAGATATCTTGGCTAAAGAGCTTGGGACTATGAAGGAGGGCGCTGGTGCGCTGGCTATGCGGAGGGAGGCTGATCGGAGGCCTGGGCTGCTGCTGCAGTTCGACGTGCTGGTGCTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.28

Weight (kDa)

5.64

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 44
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 130
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 2 cut(s) 70, 181
AluI AGCT 2 cut(s) 70, 181
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 4 cut(s) 247, 250, 253, 274
Asp718I GGTACC 1 cut(s) 119
AspLEI GCGC 2 cut(s) 203, 211
BanI GGYRCC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 234, 237, 240, 261
BciT130I CCWGG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 254, 278
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 4 cut(s) 248, 251, 254, 275
BlsI GCNGC 4 cut(s) 249, 252, 255, 276
Bme1390I CCNGG 1 cut(s) 243
BmgBI CACGTC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 4 cut(s) 234, 237, 240, 261
BshFI GGCC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 119
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 36, 232
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 258
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 2 cut(s) 36, 232
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 2 cut(s) 203, 211
BstKTI GATC 2 cut(s) 39, 235
BstMBI GATC 2 cut(s) 36, 232
BstMWI GCNNNNNNNGC 4 cut(s) 217, 247, 253, 274
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 2 cut(s) 254, 278
BstV1I GCAGC 4 cut(s) 234, 237, 240, 261
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 241
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 2 cut(s) 203, 211
Csp6I GTAC 1 cut(s) 120
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviJI RGCY 8 cut(s) 70, 107, 173, 181, 215, 230, 241, 247
CviKI_1 RGCY 8 cut(s) 70, 107, 173, 181, 215, 230, 241, 247
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 38, 234
DpnII GATC 2 cut(s) 36, 232
Eco147I AGGCCT 1 cut(s) 241
Eco32I GATATC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 4 cut(s) 12, 140, 191, 218
FaqI GGGAC 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 248, 251, 254, 275
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 248, 251, 254, 275
GlaI GCGC 2 cut(s) 202, 210
GluI GCNGC 4 cut(s) 248, 251, 254, 275
GsuI CTGGAG 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 241
HhaI GCGC 2 cut(s) 203, 211
Hin6I GCGC 2 cut(s) 201, 209
HinP1I GCGC 2 cut(s) 201, 209
HinfI GANTC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 115, 237
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 4, 157, 256
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 247, 253, 274
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 264
HspAI GCGC 2 cut(s) 201, 209
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 36, 232
LpnPI CCDG 7 cut(s) 60, 165, 189, 197, 228, 254, 255
Lsp1109I GCAGC 4 cut(s) 234, 237, 240, 261
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 264
MalI GATC 2 cut(s) 38, 234
MboI GATC 2 cut(s) 36, 232
MboII GAAGA 2 cut(s) 56, 67
MluCI AATT 1 cut(s) 158
MnlI CCTC 7 cut(s) 8, 109, 124, 190, 216, 220, 231
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 217, 247, 253, 274
NdeII GATC 2 cut(s) 36, 232
NlaIV GGNNCC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 241
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 4 cut(s) 249, 252, 255, 276
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 121
PstI CTGCAG 1 cut(s) 258
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SatI GCNGC 4 cut(s) 248, 251, 254, 275
Sau3AI GATC 2 cut(s) 36, 232
ScrFI CCNGG 1 cut(s) 243
SetI ASST 3 cut(s) 72, 183, 267
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 254, 278
Sse9I AATT 1 cut(s) 158
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 1 cut(s) 220
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 261
TasI AATT 1 cut(s) 158
TfiI GAWTC 1 cut(s) 110
TseI GCWGC 4 cut(s) 247, 250, 253, 274
TspDTI ATGAA 3 cut(s) 57, 73, 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.