Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000090

Physical Location & Seq

Genomic Coordinates Forward (+)

42561225 .. 42567256

Gene Structure 6032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTAGGTTTATCGCCTCTATTCTTATAAAAGTTGCCAGCAACCCTAGTTACGTAAATAGTACGAGGAAGACTAGGGAGCAAAGTCCTCTAATCTGGCCTCTACTTTCTTTTGATATTGTGTTCAACTATATTGGGATAGCTGATGCGATTTTGAACCTTGTGAGTAGTGGGACGACATTCAAAGAAAACAACTTGAAAGAGATTGAGGGTGGAGTTGTGTTGCGCAATCAGAAGCGTAGTAAGATCAATACTATCAATAGGAACAAGAAAAAATATAATCATTGTGGTGGTTCACGTCCTTTCACGAAACACATGGAAGCTGAAGAACAGAAAAATATGATTGAAGAGTTGATTGAAACCAAGCAACAATTGGCTGAGTCTGAGGATACCCCATTTGAAGATGTTGTAGTGTCTATCCCTATGCAATTAGATATCTTGGCTAAGGAGCTCGAAACTATGAAGGGTAAGACCATTCGAGGTGTGGGCTATGGTATTAAAAAGGACAGATTTTGTTCTTCAATCCCTGCATCCACGTCTAACCCAACAAATGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0003879 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

HisG HisG_C

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

9.02

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisG	PF01634	45 - 78	5.8e-06	ATP phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica	MD09G1277700.v1.1
pyrus_communis	pycom14g05970 pycom395g00100
rosa_chinensis	RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata	RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora	Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii	Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa	Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha	Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana	Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc16I	TGCGCA	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	8 cut(s)	127, 157, 184, 199, 347, 359, 401, 522
AjiI	CACGTC	2 cut(s)	299, 537
AluBI	AGCT	3 cut(s)	143, 323, 451
AluI	AGCT	3 cut(s)	143, 323, 451
Alw21I	GWGCWC	1 cut(s)	453
AoxI	GGCC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	48, 75
BfuI	GTATCC	1 cut(s)	382
BmgBI	CACGTC	2 cut(s)	299, 537
BmsI	GCATC	2 cut(s)	136, 539
BpiI	GAAGAC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	55
BseGI	GGATG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	369, 375
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	370, 376
BssMI	GATC	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	378, 384, 444
BstF5I	GGATG	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstSNI	TACGTA	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	100
BtrI	CACGTC	2 cut(s)	299, 537
BtsCI	GGATG	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	100, 143, 323, 377, 443, 451, 489
CviKI_1	RGCY	7 cut(s)	100, 143, 323, 377, 443, 451, 489
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	3 cut(s)	378, 384, 444
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	451
Eco105I	TACGTA	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	1 cut(s)	319
FaiI	YATR	9 cut(s)	29, 132, 279, 317, 341, 425, 461, 492, 559
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	315
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	48, 75
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	234, 385
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	457
HpyCH4IV	ACGT	3 cut(s)	54, 298, 536
HpyCH4V	TGCA	2 cut(s)	427, 530
HpyF3I	CTNAG	3 cut(s)	378, 384, 444
HpySE526I	ACGT	3 cut(s)	54, 298, 536
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	79, 448
LpnPI	CCDG	3 cut(s)	52, 82, 540
LweI	GCATC	2 cut(s)	136, 539
MaeI	CTAG	2 cut(s)	48, 75
MaeII	ACGT	3 cut(s)	54, 298, 536
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	5 cut(s)	82, 338, 359, 413, 510
MfeI	CAATTG	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	371, 428
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	28, 60, 99, 111, 202, 379, 473
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	371
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	1 cut(s)	319
NsbI	TGCGCA	1 cut(s)	227
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	453
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	9 cut(s)	11, 57, 145, 162, 301, 325, 453, 484, 539
SfaNI	GCATC	2 cut(s)	136, 539
SmiMI	CAYNNNNRTG	1 cut(s)	288
SnaBI	TACGTA	1 cut(s)	55
Sse9I	AATT	2 cut(s)	371, 428
SspMI	CTAG	2 cut(s)	48, 75
SstI	GAGCTC	1 cut(s)	453
TaiI	ACGT	3 cut(s)	57, 301, 539
TaqI	TCGA	2 cut(s)	453, 478
TasI	AATT	2 cut(s)	371, 428
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TspDTI	ATGAA	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 481
XspI	CTAG	2 cut(s)	48, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.