Rorug04G0140600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000090
Physical Location & Seq
Reverse (-)
23190814 .. 23196813
6000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0140600.1

Sequence Viewer

Length: 1596 bp
ATGGGAAAGAAAGGGAGTTGGTTTTCTGCCATAAAGAAGGTTTTTTCACCGCACTCCAAGGAGAAGGCAGCCGATGGTTTGGAGAAGAAAAGTGCAAAAGAAAAGAAGAAAGGAAAACAAAAAAATGGAGACACTAATTCATTCATTCCCCTGTTCAGAGAACCAAGCAGTATTGAGAAAATTTTTGGGGATTTTGAAAGGGAGCAACATGTAATATCTTTTAGACCTCCTATATCTGATGAGCAACCACAATCACCGCCTTCAGTGCTTCCAAGAGTTGCTTCTCCAAGGGCTCCTTCTCCAAGGGCAGCTTCTCCAAGGGCTCCTTCTCCAAGAGCTCCTTCTCCAAGGGCGCCTTCTCCAAGAGCTCCATCTCCTAGGATCGTTCATCACCATAAGGAGATCAGCTACAGACCGGAACCAACTCTAAGGAACCACCATGCTTATGCTACTAAAATCCAAGCAGCCTATAGAGGTTATATGGCAAGGAGAAGCTTTAGAGCTCTAAAGGGTCTAGTGAGGCTTCAAGGAGTGGTTAGGGGACAGAATGTCAAGCGTCAAACAGCGAATGCCATGAAATACATGCAACTCTTAGTGCGGGTTCAATCTCAGATTCAGTCACGGAGGATCCAGATGTTAGAAAGCCAAGCAAGACGTCAAGTTCAATACAAGAATGACAAAGATGTTGAAAACACATTTGGCAAATGGACCTTGAGCCAGGCATCTGAGATGGGAAATAACGATGACTGGGATGATAGCTTGCTAACTAAAGAGGAAATAGAGGCGAGGATGCAGAAAAAGGTTGAGGCTGTCGTCAAAAGAGAAAGAGCAATGGCTTATGCATACTCTCACCAGCTGTGGAAAGCTACACCTAAATCAGGTCAAACACCTCTAGCTGATATCCGATCTGGGGGTTTTCCATGGTGGTGGAACTGGTTAGAACGTCAACTCCCGCCAAAAGACCCTCCTGTTGAAACCAATGCAATGAAAACCTTTCAGCCTACTCCTTCAAGACCACGTCCAGAGCTAAAGCAGAGCCCTTTGCCTCAATCAAGGCAACATCCTTTTGCATATGATAGCAATCTGGACACTCCAAAATCCTCAAAATCAACCATGAACCTCACAACACTAAAACAAGCACGAACCCCGCCTACCTTTAATACGAGTACTCCACAAGCAAACAGCTCTGGTTTATCAAAGTACACAAGACCAACAGCAGGTGGATCTGACTCCCCTTTCGGGTTTCCACTAAAGGATGATGATAGCCTTGTAAGCTGCCCTCCGTTCTCGGTTCCAAGCTACATGGCTCCGACGGCTTCAGCCAAAGCCAAAGCTAGAGCTAGTAGTAATCCAAGGGAGAGGTTTATGGGGACTCCAAGCAGCGAATCAAAGAGAAGGCTTTCTTTTCCTTTGACTCAAGGTATTGGGTCGTTCAAGTGGAAGAAAGGACCTTTTTTCTCTAATAATAAGGATTCTGGCTCTCAAAGGATTTTAGATAAGAACCAGTCTCTGCAATCTATAGAAATTATGAGTATAGATTCCACGGTTTCTATGCCTGCAGGAGTTGGAAGGAGGCCGTTTAACAGATTTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

531

Amino Acids

59.71

Weight (kDa)

10.43

Isoelectric Point (pI)

69.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 402 - 474 1.8e-08 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1208
AatII GACGTC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 1208
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 5 cut(s) 50, 257, 598, 953, 1148
AclWI GGATC 4 cut(s) 389, 622, 635, 1231
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 2 cut(s) 246, 1302
AcyI GRCGYC 2 cut(s) 353, 655
AfaI GTAC 2 cut(s) 1168, 1202
AfiI CCNNNNNNNGG 4 cut(s) 878, 910, 1217, 1239
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 8 cut(s) 197, 527, 605, 665, 689, 974, 1011, 1435
AhdI GACNNNNNGTC 1 cut(s) 548
AjiI CACGTC 1 cut(s) 1019
AjnI CCWGG 1 cut(s) 717
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
Alw21I GWGCWC 3 cut(s) 340, 370, 505
Alw26I GTCTC 2 cut(s) 123, 1512
AlwI GGATC 4 cut(s) 389, 622, 635, 1231
AlwNI CAGNNNCTG 1 cut(s) 1510
AoxI GGCC 1 cut(s) 1574
ApeKI GCWGC 5 cut(s) 68, 308, 464, 1275, 1380
ApoI RAATTY 1 cut(s) 180
ArsI GACNNNNNNTTYG 2 cut(s) 1220, 1252
Asp700I GAANNNNTTC 1 cut(s) 1399
AspA2I CCTAGG 1 cut(s) 377
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 708, 1448
AsuHPI GGTGA 4 cut(s) 39, 246, 383, 842
AvaII GGWCC 2 cut(s) 708, 1448
AvrII CCTAGG 1 cut(s) 377
BamHI GGATCC 1 cut(s) 627
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 6 cut(s) 295, 325, 340, 370, 505, 1040
Bbv12I GWGCWC 3 cut(s) 340, 370, 505
BbvI GCAGC 5 cut(s) 80, 320, 476, 1262, 1392
BccI CCATC 3 cut(s) 68, 379, 724
BceAI ACGGC 2 cut(s) 1329, 1561
BciT130I CCWGG 1 cut(s) 719
BcoDI GTCTC 2 cut(s) 123, 1512
BfaI CTAG 5 cut(s) 378, 515, 893, 1335, 1341
BfmI CTRYAG 4 cut(s) 409, 469, 1518, 1557
BfoI RGCGCY 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 1208
BisI GCNGC 5 cut(s) 69, 309, 465, 1276, 1381
BlnI CCTAGG 1 cut(s) 377
BlsI GCNGC 5 cut(s) 70, 310, 466, 1277, 1382
BmcAI AGTACT 1 cut(s) 1168
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 2 cut(s) 708, 1448
BmeRI GACNNNNNGTC 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 1019
BmgT120I GGNCC 2 cut(s) 708, 1448
BmiI GGNNCC 8 cut(s) 294, 324, 354, 420, 434, 629, 1293, 1308
BmrFI CCNGG 1 cut(s) 719
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 2 cut(s) 731, 780
BmuI ACTGGG 1 cut(s) 757
BpuEI CTTGAG 2 cut(s) 733, 1401
BsaBI GATNNNNATC 1 cut(s) 1080
BsaHI GRCGYC 2 cut(s) 353, 655
BsaJI CCNNGG 9 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352, 1542
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 4 cut(s) 933, 963, 1153, 1183
Bsc4I CCNNNNNNNGG 4 cut(s) 878, 910, 1217, 1239
Bse1I ACTGG 3 cut(s) 752, 938, 1504
Bse3DI GCAATG 2 cut(s) 837, 990
Bse8I GATNNNNATC 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 719
BseDI CCNNGG 9 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352, 1542
BseGI GGATG 4 cut(s) 757, 795, 1060, 1261
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 4 cut(s) 878, 910, 1217, 1239
BseMI GCAATG 2 cut(s) 837, 990
BseMII CTCAG 2 cut(s) 623, 717
BseNI ACTGG 3 cut(s) 752, 938, 1504
BseXI GCAGC 5 cut(s) 80, 320, 476, 1262, 1392
BshFI GGCC 1 cut(s) 1576
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 3 cut(s) 340, 370, 505
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 2 cut(s) 555, 1384
BslI CCNNNNNNNGG 4 cut(s) 878, 910, 1217, 1239
BsmAI GTCTC 2 cut(s) 123, 1512
BsmFI GGGAC 2 cut(s) 555, 1384
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 1 cut(s) 1576
Bsp1286I GDGCHC 6 cut(s) 295, 325, 340, 370, 505, 1040
Bsp143I GATC 5 cut(s) 381, 402, 627, 905, 1223
Bsp19I CCATGG 1 cut(s) 920
BspACI CCGC 5 cut(s) 50, 257, 598, 953, 1148
BspANI GGCC 1 cut(s) 1576
BspCNI CTCAG 2 cut(s) 622, 718
BspLI GGNNCC 8 cut(s) 294, 324, 354, 420, 434, 629, 1293, 1308
BspMAI CTGCAG 1 cut(s) 1561
BspMI ACCTGC 1 cut(s) 1208
BspPI GGATC 4 cut(s) 389, 622, 635, 1231
BspT107I GGYRCC 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 837, 990
BsrI ACTGG 3 cut(s) 752, 938, 1504
BssECI CCNNGG 9 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352, 1542
BssMI GATC 5 cut(s) 381, 402, 627, 905, 1223
BssNI GRCGYC 2 cut(s) 353, 655
BssT1I CCWWGG 8 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 1 cut(s) 1546
BstACI GRCGYC 2 cut(s) 353, 655
BstC8I GCNNGC 2 cut(s) 761, 1557
BstDEI CTNAG 4 cut(s) 428, 592, 609, 726
BstDSI CCRYGG 2 cut(s) 920, 1542
BstENI CCTNNNNNAGG 1 cut(s) 876
BstF5I GGATG 4 cut(s) 757, 795, 1060, 1261
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 5 cut(s) 384, 405, 630, 908, 1226
BstMAI GTCTC 2 cut(s) 123, 1512
BstMBI GATC 5 cut(s) 381, 402, 627, 905, 1223
BstMWI GCNNNNNNNGC 3 cut(s) 265, 1272, 1313
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 2 cut(s) 212, 586
BstSCI CCNGG 1 cut(s) 717
BstSFI CTRYAG 4 cut(s) 409, 469, 1518, 1557
BstV1I GCAGC 5 cut(s) 80, 320, 476, 1262, 1392
BstX2I RGATCY 2 cut(s) 627, 1223
BstXI CCANNNNNNTGG 1 cut(s) 927
BstYI RGATCY 2 cut(s) 627, 1223
BsuRI GGCC 1 cut(s) 1576
BtgI CCRYGG 2 cut(s) 920, 1542
BtrI CACGTC 1 cut(s) 1019
BtsCI GGATG 4 cut(s) 757, 795, 1060, 1261
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 1208
Cac8I GCNNGC 2 cut(s) 761, 1557
CaiI CAGNNNCTG 1 cut(s) 1510
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 708, 1448
CseI GACGC 1 cut(s) 545
Csp6I GTAC 2 cut(s) 1167, 1201
CviAII CATG 7 cut(s) 209, 440, 574, 583, 921, 1114, 1303
CviQI GTAC 2 cut(s) 1167, 1201
DdeI CTNAG 4 cut(s) 428, 592, 609, 726
DinI GGCGCC 1 cut(s) 354
DpnI GATC 5 cut(s) 383, 404, 629, 907, 1225
DpnII GATC 5 cut(s) 381, 402, 627, 905, 1223
DriI GACNNNNNGTC 1 cut(s) 548
Eam1105I GACNNNNNGTC 1 cut(s) 548
Ecl136II GAGCTC 3 cut(s) 338, 368, 503
Eco130I CCWWGG 8 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352
Eco24I GRGCYC 6 cut(s) 295, 325, 340, 370, 505, 1040
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 2 cut(s) 708, 1448
Eco53kI GAGCTC 3 cut(s) 338, 368, 503
Eco57I CTGAAG 2 cut(s) 246, 1302
EcoICRI GAGCTC 3 cut(s) 338, 368, 503
EcoNI CCTNNNNNAGG 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 1448
EcoRII CCWGG 1 cut(s) 717
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 8 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352
EcoT22I ATGCAT 1 cut(s) 844
EcoT38I GRGCYC 6 cut(s) 295, 325, 340, 370, 505, 1040
EgeI GGCGCC 1 cut(s) 354
EheI GGCGCC 1 cut(s) 354
ErhI CCWWGG 8 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352
FaeI CATG 7 cut(s) 212, 443, 577, 586, 924, 1117, 1306
FaqI GGGAC 2 cut(s) 555, 1384
FatI CATG 7 cut(s) 208, 439, 573, 582, 920, 1113, 1302
FauI CCCGC 3 cut(s) 591, 960, 1155
FauNDI CATATG 1 cut(s) 1072
Fnu4HI GCNGC 5 cut(s) 69, 309, 465, 1276, 1381
FokI GGATG 4 cut(s) 764, 802, 1047, 1268
FriOI GRGCYC 6 cut(s) 295, 325, 340, 370, 505, 1040
Fsp4HI GCNGC 5 cut(s) 69, 309, 465, 1276, 1381
FspBI CTAG 5 cut(s) 378, 515, 893, 1335, 1341
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 69, 309, 465, 1276, 1381
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 1 cut(s) 1576
HapII CCGG 1 cut(s) 416
HgaI GACGC 1 cut(s) 545
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 2 cut(s) 353, 655
Hin1II CATG 7 cut(s) 212, 443, 577, 586, 924, 1117, 1306
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 1 cut(s) 947
HindII GTYRAC 1 cut(s) 947
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 7 cut(s) 613, 1229, 1372, 1385, 1414, 1472, 1538
HpaII CCGG 1 cut(s) 416
HphI GGTGA 4 cut(s) 39, 246, 383, 842
Hpy166II GTNNAC 2 cut(s) 947, 1203
Hpy188I TCNGA 7 cut(s) 158, 238, 612, 727, 905, 1228, 1311
Hpy188III TCNNGA 4 cut(s) 631, 1011, 1022, 1085
Hpy8I GTNNAC 2 cut(s) 947, 1203
Hpy99I CGWCG 1 cut(s) 1315
HpyCH4III ACNGT 1 cut(s) 1546
HpyCH4IV ACGT 3 cut(s) 655, 943, 1018
HpyCH4V TGCA 8 cut(s) 95, 586, 793, 842, 983, 1070, 1513, 1559
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 1272, 1313
HpyF3I CTNAG 4 cut(s) 428, 592, 609, 726
HpySE526I ACGT 3 cut(s) 655, 943, 1018
Hsp92I GRCGYC 2 cut(s) 353, 655
Hsp92II CATG 7 cut(s) 212, 443, 577, 586, 924, 1117, 1306
HspAI GCGC 1 cut(s) 353
KasI GGCGCC 1 cut(s) 352
Kzo9I GATC 5 cut(s) 381, 402, 627, 905, 1223
LmnI GCTCC 6 cut(s) 202, 298, 328, 343, 373, 1312
Lsp1109I GCAGC 5 cut(s) 80, 320, 476, 1262, 1392
LweI GCATC 2 cut(s) 731, 780
MaeI CTAG 5 cut(s) 378, 515, 893, 1335, 1341
MaeII ACGT 3 cut(s) 655, 943, 1018
MaeIII GTNAC 1 cut(s) 618
MalI GATC 5 cut(s) 383, 404, 629, 907, 1225
MboI GATC 5 cut(s) 381, 402, 627, 905, 1223
MboII GAAGA 3 cut(s) 97, 118, 1453
MflI RGATCY 2 cut(s) 627, 1223
MhlI GDGCHC 6 cut(s) 295, 325, 340, 370, 505, 1040
MluCI AATT 3 cut(s) 136, 180, 1524
Mly113I GGCGCC 1 cut(s) 353
MlyI GAGTC 3 cut(s) 1223, 1366, 1408
MmeI TCCRAC 2 cut(s) 1334, 1546
Mph1103I ATGCAT 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 1399
MseI TTAA 2 cut(s) 1158, 1581
MslI CAYNNNNRTG 2 cut(s) 444, 925
MspA1I CMGCKG 1 cut(s) 856
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 719
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 3 cut(s) 265, 1272, 1313
NarI GGCGCC 1 cut(s) 353
NcoI CCATGG 1 cut(s) 920
NdeI CATATG 1 cut(s) 1072
NdeII GATC 5 cut(s) 381, 402, 627, 905, 1223
NlaIII CATG 7 cut(s) 212, 443, 577, 586, 924, 1117, 1306
NlaIV GGNNCC 8 cut(s) 294, 324, 354, 420, 434, 629, 1293, 1308
NmuCI GTSAC 1 cut(s) 618
NsiI ATGCAT 1 cut(s) 844
NspI RCATGY 2 cut(s) 212, 586
PaqCI CACCTGC 1 cut(s) 1208
PciI ACATGT 1 cut(s) 208
PctI GAATGC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 1399
PfeI GAWTC 4 cut(s) 613, 1385, 1472, 1538
PflFI GACNNNGTC 1 cut(s) 1017
PkrI GCNGC 5 cut(s) 70, 310, 466, 1277, 1382
PleI GAGTC 3 cut(s) 1223, 1366, 1408
PluTI GGCGCC 1 cut(s) 356
PpsI GAGTC 3 cut(s) 1223, 1366, 1408
PpuMI RGGWCCY 1 cut(s) 1448
PscI ACATGT 1 cut(s) 208
Psp124BI GAGCTC 3 cut(s) 340, 370, 505
Psp5II RGGWCCY 1 cut(s) 1448
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 8 cut(s) 294, 324, 354, 420, 434, 629, 1293, 1308
PspPI GGNCC 2 cut(s) 708, 1448
PspPPI RGGWCCY 1 cut(s) 1448
PsrI GAACNNNNNNTAC 2 cut(s) 1135, 1167
PstI CTGCAG 1 cut(s) 1561
PstNI CAGNNNCTG 1 cut(s) 1510
PsuI RGATCY 2 cut(s) 627, 1223
PsyI GACNNNGTC 1 cut(s) 1017
PvuII CAGCTG 1 cut(s) 856
RsaI GTAC 2 cut(s) 1168, 1202
RsaNI GTAC 2 cut(s) 1167, 1201
RseI CAYNNNNRTG 2 cut(s) 444, 925
SacI GAGCTC 3 cut(s) 340, 370, 505
SaqAI TTAA 2 cut(s) 1158, 1581
SatI GCNGC 5 cut(s) 69, 309, 465, 1276, 1381
Sau3AI GATC 5 cut(s) 381, 402, 627, 905, 1223
Sau96I GGNCC 2 cut(s) 708, 1448
SbfI CCTGCAGG 1 cut(s) 1561
ScaI AGTACT 1 cut(s) 1168
SchI GAGTC 3 cut(s) 1223, 1366, 1408
ScrFI CCNGG 1 cut(s) 719
SdaI CCTGCAGG 1 cut(s) 1561
SduI GDGCHC 6 cut(s) 295, 325, 340, 370, 505, 1040
SfaNI GCATC 2 cut(s) 731, 780
SfcI CTRYAG 4 cut(s) 409, 469, 1518, 1557
SfoI GGCGCC 1 cut(s) 354
SinI GGWCC 2 cut(s) 708, 1448
SmiMI CAYNNNNRTG 2 cut(s) 444, 925
SmlI CTYRAG 2 cut(s) 712, 1416
SmoI CTYRAG 2 cut(s) 712, 1416
Sse8387I CCTGCAGG 1 cut(s) 1561
Sse9I AATT 3 cut(s) 136, 180, 1524
SsiI CCGC 5 cut(s) 50, 257, 598, 953, 1148
SspDI GGCGCC 1 cut(s) 352
SspMI CTAG 5 cut(s) 378, 515, 893, 1335, 1341
SstI GAGCTC 3 cut(s) 340, 370, 505
StyD4I CCNGG 1 cut(s) 717
StyI CCWWGG 8 cut(s) 57, 287, 302, 317, 347, 377, 920, 1352
TaaI ACNGT 1 cut(s) 1546
TaiI ACGT 3 cut(s) 658, 946, 1021
TasI AATT 3 cut(s) 136, 180, 1524
TatI WGTACW 2 cut(s) 1166, 1200
TfiI GAWTC 4 cut(s) 613, 1385, 1472, 1538
Tru1I TTAA 2 cut(s) 1158, 1581
Tru9I TTAA 2 cut(s) 1158, 1581
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 5 cut(s) 68, 308, 464, 1275, 1380
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 6 cut(s) 129, 133, 377, 590, 1001, 1130
TspGWI ACGGA 2 cut(s) 637, 1272
TspRI CASTG 1 cut(s) 270
Tth111I GACNNNGTC 1 cut(s) 1017
VpaK11BI GGWCC 2 cut(s) 708, 1448
XagI CCTNNNNNAGG 1 cut(s) 876
XapI RAATTY 1 cut(s) 180
XceI RCATGY 2 cut(s) 212, 586
XmaJI CCTAGG 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 1399
XspI CTAG 5 cut(s) 378, 515, 893, 1335, 1341
ZraI GACGTC 1 cut(s) 656
ZrmI AGTACT 1 cut(s) 1168
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.