Rmu_sc0003895.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003895.1
OG0000090
Physical Location & Seq
Reverse (-)
62179 .. 64779
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003895.1_g000016.1.cds

Sequence Viewer

Length: 1395 bp
atgattgagatgattgctagcaatggtaacaagaaggtggagataatatttgaccaggaacattgggtcccaaatactgtgtacagcaataagaagttcactaccgctatagggattgaggttcgaagtcgagctcctgtatgttaccgcggatggaataagattccagcaaatattaagaggacactactagagggattgacggtacactttgacgtcgaaatcgaacatccaaaagttatctatattgtggatgataagatgcgctcggcgtatactcaatttaagtggaagttgcatgatcactataaaaaatgtggcacacctgctcggggacgagccacacttcctccaccagatctatggcgtgagagatcgacagaggagtggcattggctatgtgacaagctctacaccgatccaaaatatattgagggaaatcctttgtctttcatagacaattgggcagctatgtatcaagattcaaatagcaattgggttagtgatgatgcatgtgataaatatgatcgacagaaaaataagagagaagagcaaaaggagaaactaaccctggaggcactagagggtactccaccagaatctgtacaagttactgcgcgtgatgagattccaatcatggcggaagagtgtggaaggaagggaaaaagagttcgtggtctaggctcgtttcctcgcatggagcttccaactgctacatcttcaacaactgtgagttctgagatgaatttaatgcaagataaagtgaaaaagcttgaatcaactgtggacactatgcggtcacaaaatgctcagctaatgacaatgttgaagaagttcctaatgaatagccaaggctactttgctgatacagaaaacattgacatgatcatcgtggtacccaacagtgaagaagatgatgtctttggaagagatgaagacggtgtccaaaacaatggagataattcagaaacagaggatttggaggaagacttgcctttgatcagttggaaggaccagaaagatcgagagacagagagagagaaccagagttctccgacccggaacgcgaccggcgactgggtccaaccagaaaccgcccctccggccacctctacaaggctggccaccgatcatacatgcagcgactgggaacgaagaattgacgatctaaagcttgaagaacctccggcgagttttgcagttcccgacgactctggccaccgtttgggccgcctgtgcttagtttttggcttggttgcacctgtaggcgaaggcagaccttgtttaggtatgaagtacgagaattgttggttgagtggcgatcaggtcgaattttgtcatcagtcgagtttcgaaagtaggctggacggagttgatcaactcggcgtcgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

464

Amino Acids

53.03

Weight (kDa)

4.95

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 334
AatII GACGTC 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 334
Acc65I GGTACC 1 cut(s) 895
AccB1I GGYRCC 1 cut(s) 895
AccB7I CCANNNNNTGG 1 cut(s) 1225
AccI GTMKAC 2 cut(s) 275, 1389
AccII CGCG 3 cut(s) 150, 619, 1067
AciI CCGC 7 cut(s) 105, 148, 150, 641, 796, 1095, 1231
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 3 cut(s) 1104, 1122, 1216
AcsI RAATTY 2 cut(s) 745, 1331
AcyI GRCGYC 2 cut(s) 216, 1386
AfaI GTAC 6 cut(s) 83, 207, 589, 606, 897, 1298
AfiI CCNNNNNNNGG 6 cut(s) 111, 332, 1077, 1116, 1225, 1286
AgsI TTSAA 5 cut(s) 486, 723, 776, 829, 1178
AjnI CCWGG 2 cut(s) 54, 570
AloI GAACNNNNNNTCC 4 cut(s) 51, 83, 654, 686
AluBI AGCT 7 cut(s) 134, 409, 470, 703, 772, 814, 1174
AluI AGCT 7 cut(s) 134, 409, 470, 703, 772, 814, 1174
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 1022
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 2 cut(s) 602, 1146
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 4 cut(s) 1104, 1122, 1216, 1228
ApeKI GCWGC 2 cut(s) 467, 1140
ApoI RAATTY 2 cut(s) 745, 1331
Asp700I GAANNNNTTC 1 cut(s) 833
Asp718I GGTACC 1 cut(s) 895
AspLEI GCGC 2 cut(s) 267, 619
AspS9I GGNCC 4 cut(s) 67, 1012, 1081, 1228
AsuC2I CCSGG 1 cut(s) 1060
AsuII TTCGAA 2 cut(s) 124, 1353
AsuNHI GCTAGC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 3 cut(s) 67, 1012, 1081
BalI TGGCCA 2 cut(s) 1124, 1218
BanI GGYRCC 1 cut(s) 895
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 942, 993
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 479, 1152
BccI CCATC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 56, 572
BclI TGATCA 4 cut(s) 301, 885, 999, 1375
BcnI CCSGG 1 cut(s) 1060
BcoDI GTCTC 1 cut(s) 1022
BfaI CTAG 4 cut(s) 18, 191, 581, 680
BfmI CTRYAG 2 cut(s) 108, 1263
BfuAI ACCTGC 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 1103
BglII AGATCT 1 cut(s) 358
BisI GCNGC 3 cut(s) 468, 1141, 1231
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 3 cut(s) 469, 1142, 1232
Bme1390I CCNGG 3 cut(s) 56, 572, 1060
Bme18I GGWCC 3 cut(s) 67, 1012, 1081
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 4 cut(s) 67, 1012, 1081, 1228
BmiI GGNNCC 4 cut(s) 68, 69, 897, 1082
BmrFI CCNGG 3 cut(s) 56, 572, 1060
BmrI ACTGGG 2 cut(s) 1087, 1156
BmsI GCATC 2 cut(s) 252, 499
BmtI GCTAGC 1 cut(s) 21
BmuI ACTGGG 2 cut(s) 1087, 1156
BpiI GAAGAC 2 cut(s) 942, 993
BpmI CTGGAG 1 cut(s) 593
Bpu1102I GCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 2 cut(s) 124, 1353
BpuMI CCSGG 1 cut(s) 1060
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 2 cut(s) 216, 1386
BsaJI CCNNGG 3 cut(s) 148, 570, 850
BsaXI ACNNNNNCTCC 4 cut(s) 334, 364, 1084, 1114
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 332, 1077, 1116, 1225, 1286
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 2 cut(s) 1082, 1151
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 632
BseBI CCWGG 2 cut(s) 56, 572
BseDI CCNNGG 3 cut(s) 148, 570, 850
BseGI GGATG 3 cut(s) 158, 229, 259
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 6 cut(s) 111, 332, 1077, 1116, 1225, 1286
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 729, 824
BseNI ACTGG 2 cut(s) 1082, 1151
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 479, 1152
Bsh1236I CGCG 3 cut(s) 150, 619, 1067
Bsh1285I CGRYCG 1 cut(s) 1071
BshFI GGCC 4 cut(s) 1106, 1124, 1218, 1230
BshNI GGYRCC 1 cut(s) 895
BsiEI CGRYCG 1 cut(s) 1071
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 4 cut(s) 1060, 1071, 1103, 1187
BslFI GGGAC 2 cut(s) 53, 348
BslI CCNNNNNNNGG 6 cut(s) 111, 332, 1077, 1116, 1225, 1286
BsmAI GTCTC 1 cut(s) 1022
BsmFI GGGAC 2 cut(s) 53, 348
BsnI GGCC 4 cut(s) 1106, 1124, 1218, 1230
BsoBI CYCGRG 1 cut(s) 330
Bsp119I TTCGAA 2 cut(s) 124, 1353
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 2 cut(s) 81, 604
Bsp1720I GCTNAGC 1 cut(s) 810
BspACI CCGC 7 cut(s) 105, 148, 150, 641, 796, 1095, 1231
BspANI GGCC 4 cut(s) 1106, 1124, 1218, 1230
BspCNI CTCAG 2 cut(s) 730, 823
BspFNI CGCG 3 cut(s) 150, 619, 1067
BspLI GGNNCC 4 cut(s) 68, 69, 897, 1082
BspMI ACCTGC 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 2 cut(s) 124, 1353
BspT107I GGYRCC 1 cut(s) 895
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 1070
BsrGI TGTACA 2 cut(s) 81, 604
BsrI ACTGG 2 cut(s) 1082, 1151
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 3 cut(s) 148, 570, 850
BssNAI GTATAC 1 cut(s) 276
BssNI GRCGYC 2 cut(s) 216, 1386
BssT1I CCWWGG 1 cut(s) 850
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 56, 572
Bst4CI ACNGT 7 cut(s) 79, 205, 730, 784, 905, 941, 1223
Bst6I CTCTTC 3 cut(s) 543, 639, 922
BstACI GRCGYC 2 cut(s) 216, 1386
BstAUI TGTACA 2 cut(s) 81, 604
BstBI TTCGAA 2 cut(s) 124, 1353
BstC8I GCNNGC 2 cut(s) 19, 1122
BstDEI CTNAG 3 cut(s) 738, 810, 1240
BstDSI CCRYGG 1 cut(s) 148
BstENI CCTNNNNNAGG 2 cut(s) 1114, 1284
BstF5I GGATG 3 cut(s) 158, 229, 259
BstFNI CGCG 3 cut(s) 150, 619, 1067
BstHHI GCGC 2 cut(s) 267, 619
BstMAI GTCTC 1 cut(s) 1022
BstMCI CGRYCG 1 cut(s) 1071
BstMWI GCNNNNNNNGC 3 cut(s) 1103, 1196, 1236
BstNI CCWGG 2 cut(s) 56, 572
BstNSI RCATGY 2 cut(s) 516, 1140
BstSCI CCNGG 3 cut(s) 54, 570, 1058
BstSFI CTRYAG 2 cut(s) 108, 1263
BstUI CGCG 3 cut(s) 150, 619, 1067
BstV1I GCAGC 2 cut(s) 479, 1152
BstV2I GAAGAC 2 cut(s) 942, 993
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 2 cut(s) 363, 953
BstYI RGATCY 1 cut(s) 358
BstZ17I GTATAC 1 cut(s) 276
BsuRI GGCC 4 cut(s) 1106, 1124, 1218, 1230
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 3 cut(s) 158, 229, 259
BtsIMutI CAGTG 1 cut(s) 910
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 19, 1122
CaiI CAGNNNCTG 2 cut(s) 602, 1146
CfoI GCGC 2 cut(s) 267, 619
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 4 cut(s) 67, 1012, 1081, 1228
Cfr42I CCGCGG 1 cut(s) 151
CseI GACGC 1 cut(s) 1375
Csp6I GTAC 6 cut(s) 82, 206, 588, 605, 896, 1297
CspCI CAANNNNNGTGG 2 cut(s) 269, 304
CviAII CATG 6 cut(s) 299, 513, 637, 697, 883, 1137
CviQI GTAC 6 cut(s) 82, 206, 588, 605, 896, 1297
DdeI CTNAG 3 cut(s) 738, 810, 1240
EaeI YGGCCR 3 cut(s) 1104, 1122, 1216
Eam1104I CTCTTC 3 cut(s) 543, 639, 922
EarI CTCTTC 3 cut(s) 543, 639, 922
EciI GGCGGA 1 cut(s) 656
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 850
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 3 cut(s) 67, 1012, 1081
Eco53kI GAGCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 134
EcoNI CCTNNNNNAGG 2 cut(s) 1114, 1284
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 54, 570
EcoT14I CCWWGG 1 cut(s) 850
EcoT22I ATGCAT 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 850
FaeI CATG 6 cut(s) 302, 516, 640, 700, 886, 1140
FaqI GGGAC 2 cut(s) 53, 348
FatI CATG 6 cut(s) 298, 512, 636, 696, 882, 1136
FbaI TGATCA 4 cut(s) 301, 885, 999, 1375
FblI GTMKAC 2 cut(s) 275, 1389
Fnu4HI GCNGC 3 cut(s) 468, 1141, 1231
FokI GGATG 3 cut(s) 165, 216, 266
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 468, 1141, 1231
FspBI CTAG 4 cut(s) 18, 191, 581, 680
GlaI GCGC 2 cut(s) 266, 618
GluI GCNGC 3 cut(s) 468, 1141, 1231
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 4 cut(s) 1106, 1124, 1218, 1230
HapII CCGG 4 cut(s) 1060, 1071, 1103, 1187
HgaI GACGC 1 cut(s) 1375
HhaI GCGC 2 cut(s) 267, 619
Hin1I GRCGYC 2 cut(s) 216, 1386
Hin1II CATG 6 cut(s) 302, 516, 640, 700, 886, 1140
Hin6I GCGC 2 cut(s) 265, 617
HinP1I GCGC 2 cut(s) 265, 617
HincII GTYRAC 1 cut(s) 1390
HindII GTYRAC 1 cut(s) 1390
HindIII AAGCTT 2 cut(s) 770, 1172
HinfI GANTC 6 cut(s) 163, 482, 599, 628, 776, 1211
HpaII CCGG 4 cut(s) 1060, 1071, 1103, 1187
Hpy166II GTNNAC 6 cut(s) 82, 99, 208, 276, 787, 1390
Hpy188I TCNGA 3 cut(s) 739, 967, 1056
Hpy188III TCNNGA 3 cut(s) 479, 1025, 1205
Hpy8I GTNNAC 6 cut(s) 82, 99, 208, 276, 787, 1390
Hpy99I CGWCG 3 cut(s) 221, 1211, 1391
HpyAV CCTTC 5 cut(s) 28, 648, 652, 1003, 1265
HpyCH4III ACNGT 7 cut(s) 79, 205, 730, 784, 905, 941, 1223
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 6 cut(s) 298, 512, 754, 1140, 1199, 1259
HpyF10VI GCNNNNNNNGC 3 cut(s) 1103, 1196, 1236
HpyF3I CTNAG 3 cut(s) 738, 810, 1240
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 2 cut(s) 216, 1386
Hsp92II CATG 6 cut(s) 302, 516, 640, 700, 886, 1140
HspAI GCGC 2 cut(s) 265, 617
KflI GGGWCCC 1 cut(s) 67
KpnI GGTACC 1 cut(s) 899
Ksp22I TGATCA 4 cut(s) 301, 885, 999, 1375
KspI CCGCGG 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 139, 700
Lsp1109I GCAGC 2 cut(s) 479, 1152
LweI GCATC 2 cut(s) 252, 499
MaeI CTAG 4 cut(s) 18, 191, 581, 680
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 5 cut(s) 26, 143, 401, 610, 798
MfeI CAATTG 2 cut(s) 460, 493
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 2 cut(s) 1124, 1218
MluCI AATT 8 cut(s) 281, 460, 493, 745, 961, 1158, 1303, 1331
MluNI TGGCCA 2 cut(s) 1124, 1218
MlyI GAGTC 1 cut(s) 1205
MmeI TCCRAC 4 cut(s) 731, 986, 1079, 1108
Mox20I TGGCCA 2 cut(s) 1124, 1218
Mph1103I ATGCAT 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 833
MscI TGGCCA 2 cut(s) 1124, 1218
MseI TTAA 3 cut(s) 177, 285, 749
MslI CAYNNNNRTG 1 cut(s) 881
Msp20I TGGCCA 2 cut(s) 1124, 1218
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 4 cut(s) 1060, 1071, 1103, 1187
MspR9I CCNGG 3 cut(s) 56, 572, 1060
MunI CAATTG 2 cut(s) 460, 493
MvaI CCWGG 2 cut(s) 56, 572
MvnI CGCG 3 cut(s) 150, 619, 1067
MwoI GCNNNNNNNGC 3 cut(s) 1103, 1196, 1236
NciI CCSGG 1 cut(s) 1060
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 6 cut(s) 302, 516, 640, 700, 886, 1140
NlaIV GGNNCC 4 cut(s) 68, 69, 897, 1082
NmeAIII GCCGAG 2 cut(s) 248, 1362
NmuCI GTSAC 2 cut(s) 401, 798
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 2 cut(s) 516, 1140
NspV TTCGAA 2 cut(s) 124, 1353
PaqCI CACCTGC 1 cut(s) 334
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 1071
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 5 cut(s) 163, 482, 599, 628, 776
PflFI GACNNNGTC 2 cut(s) 941, 1079
PflMI CCANNNNNTGG 1 cut(s) 1225
PkrI GCNGC 3 cut(s) 469, 1142, 1232
PleI GAGTC 1 cut(s) 1205
PpsI GAGTC 1 cut(s) 1205
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 54, 570
PspGI CCWGG 2 cut(s) 54, 570
PspN4I GGNNCC 4 cut(s) 68, 69, 897, 1082
PspPI GGNCC 4 cut(s) 67, 1012, 1081, 1228
PspPPI RGGWCCY 1 cut(s) 67
PstNI CAGNNNCTG 2 cut(s) 602, 1146
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 2 cut(s) 941, 1079
RsaI GTAC 6 cut(s) 83, 207, 589, 606, 897, 1298
RsaNI GTAC 6 cut(s) 82, 206, 588, 605, 896, 1297
RseI CAYNNNNRTG 1 cut(s) 881
SacI GAGCTC 1 cut(s) 136
SacII CCGCGG 1 cut(s) 151
SalI GTCGAC 1 cut(s) 1388
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 177, 285, 749
SatI GCNGC 3 cut(s) 468, 1141, 1231
Sau96I GGNCC 4 cut(s) 67, 1012, 1081, 1228
SchI GAGTC 1 cut(s) 1205
ScrFI CCNGG 3 cut(s) 56, 572, 1060
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 2 cut(s) 252, 499
SfcI CTRYAG 2 cut(s) 108, 1263
Sfr303I CCGCGG 1 cut(s) 151
SfuI TTCGAA 2 cut(s) 124, 1353
SgrBI CCGCGG 1 cut(s) 151
SinI GGWCC 3 cut(s) 67, 1012, 1081
SmiMI CAYNNNNRTG 1 cut(s) 881
Sse9I AATT 8 cut(s) 281, 460, 493, 745, 961, 1158, 1303, 1331
SsiI CCGC 7 cut(s) 105, 148, 150, 641, 796, 1095, 1231
SspI AATATT 2 cut(s) 48, 175
SspMI CTAG 4 cut(s) 18, 191, 581, 680
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 3 cut(s) 54, 570, 1058
StyI CCWWGG 1 cut(s) 850
TaaI ACNGT 7 cut(s) 79, 205, 730, 784, 905, 941, 1223
TaiI ACGT 1 cut(s) 219
TasI AATT 8 cut(s) 281, 460, 493, 745, 961, 1158, 1303, 1331
TatI WGTACW 2 cut(s) 81, 604
TauI GCSGC 1 cut(s) 1233
TfiI GAWTC 5 cut(s) 163, 482, 599, 628, 776
Tru1I TTAA 3 cut(s) 177, 285, 749
Tru9I TTAA 3 cut(s) 177, 285, 749
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 2 cut(s) 401, 798
TseI GCWGC 2 cut(s) 467, 1140
Tsp45I GTSAC 2 cut(s) 401, 798
TspDTI ATGAA 5 cut(s) 442, 758, 857, 948, 1307
TspGWI ACGGA 1 cut(s) 1383
TspRI CASTG 1 cut(s) 910
Tth111I GACNNNGTC 2 cut(s) 941, 1079
Van91I CCANNNNNTGG 1 cut(s) 1225
VpaK11BI GGWCC 3 cut(s) 67, 1012, 1081
XagI CCTNNNNNAGG 2 cut(s) 1114, 1284
XapI RAATTY 2 cut(s) 745, 1331
XceI RCATGY 2 cut(s) 516, 1140
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XmiI GTMKAC 2 cut(s) 275, 1389
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 4 cut(s) 18, 191, 581, 680
ZraI GACGTC 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.