Rh4DG234600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000090
Physical Location & Seq
Forward (+)
44161229 .. 44171732
10504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG234600.1

Sequence Viewer

Length: 1617 bp
ATGGATAGAAAATGGATAAAAAATCTGAACAAGTTGAGTGATGAGTACAAGCGCGGTGTTCAGTCATTTCTTGAAGTTGCAAGCAAGCATGTGGATGTTAAAGGCAGAACTAGATGTCCTTGCATCAAGTGTCTAAACCATGATCGTCAAACTATACCAGTTGTGAAGATACATTTGAGAAACTATGGCATATCTTCGAGTTATGACATCTGGACATCTCATGGAGAAACAGTGCAACAGCGATCACAAATTCTTTCTCCCCCAATGGCTGAACAGATTGTTGGAGCCAATGATGTTGTGCATGATATTTTGAATGATGCATTCCCACCTACTGACATGGATGATATAGCTCAAGATCTAGAGGAGGATGAGATACAAGGAGGCAATGAAGATGTGATGGATAATCATGGATCTAATGGGATGAGAAGCGATGCTGATCAGATGTTGAAACCGAAATCATTATTGATGAAGAAGATTGGGAATAAGCCATCTGCCAAAAATGTTACAACAGAGTTGCAACTAGAGCATCCCCCGCAACAACAGAAAAAGCAGCCACAACAATCAGGAAAGAGACTGCCACAACCAGCAAAGAGACTACCACAACAACCAGCAAAGAGACAGCCACAAGAACTAGGAAAGAGGCAGCCACAACCACCACAGTTGCAACAACCTGAGCCATCACAGCAGCGACAACCACAACCACCATTACATTCTAGTGAAAAACCTGGCATTGCAAAATTTGTTGAAGACAAGATGAATAACACATTCAGATCATGGAAGGGAAAATTGCACAAGCACTTCAAAAAATATGGTGATGACATTGATTTTGCAAGGGCTCACCCCCCTACTAAGAAAGTGTTTGGTGACAGGGACATAAGTGACTGGGAGTGGTTGTGTGATAATTTGTACACGGATCAAGCGTATCAGAACCGTTGTAGGATCAATACTATTAATAGGAACAAGAAAATTTATAATCACTGTGGTGGTTCACGCCCTTTCACAAAACATATGGAAGCCGAAGAACAGAAGGGTAAAAACGTGACCTTTATTGAGAATTGGAGTCTCATGCATCAACATAGAGGCAACAATGGTGGTGTTTGGATCAATGAAGAAGCAGAGAAGACAGGGAAAAATCTGATTGTAGAGTTGATCAAAACCAAGCAACAGATGGCTGATTCTAAGGGTACCCCACTTGCAGATGTTATAGTGCCTGTCCCAATGCAATTAGATATCTTGGCTAAAGAGCTCGGGACTATGAAGGGTAAGACCATTCGAGGTGCACATGTGGTGGAGAAGTACAAGAGGCCACTACCGAAACTGAGGGATACGAAACCGGATTCCTGTAGGTTTGAGGAAAGAGCTGCTTCTCCGGGGACTCTGAATGTGGCGCAGCTGCGGCACATTATACTATTGCATCAGGGCAAGGCTGAGGATCACAATGGCCCAATGGAGGTGCATAAAATTGCAGACAAGTTTCGGGTTGATGTTGCAGAGGTTAAGAGGATTGTGCAGTTTGTGTCACTGCCTCCTGAGGATACCAGTAAACAGAAGAAAAACTCTTGTAGACTTGAGAGCTGTGGTTTGATCTTCTGCACTACTAACTGGGTTTTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0240

Protein Analysis

538

Amino Acids

61.44

Weight (kDa)

9.23

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 76 1.1e-18 Transposase-associated domain
Transposase_24 PF03004 295 - 396 2.1e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
Acc65I GGTACC 1 cut(s) 1184
AccB1I GGYRCC 1 cut(s) 1184
AccI GTMKAC 1 cut(s) 1564
AccII CGCG 1 cut(s) 54
AciI CCGC 3 cut(s) 54, 533, 1396
AclWI GGATC 5 cut(s) 418, 921, 947, 1109, 1440
AcsI RAATTY 3 cut(s) 249, 737, 966
AfaI GTAC 4 cut(s) 47, 908, 1186, 1298
AfiI CCNNNNNNNGG 1 cut(s) 1450
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 5 cut(s) 74, 313, 448, 746, 802
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AleI CACNNNNGTG 1 cut(s) 981
AloI GAACNNNNNNTCC 2 cut(s) 100, 132
AluBI AGCT 5 cut(s) 350, 1246, 1361, 1393, 1575
AluI AGCT 5 cut(s) 350, 1246, 1361, 1393, 1575
Alw21I GWGCWC 2 cut(s) 1248, 1282
Alw26I GTCTC 4 cut(s) 565, 586, 610, 1067
Alw44I GTGCAC 1 cut(s) 1278
AlwI GGATC 5 cut(s) 418, 921, 947, 1109, 1440
Ama87I CYCGRG 1 cut(s) 1247
AoxI GGCC 2 cut(s) 1304, 1441
ApaLI GTGCAC 1 cut(s) 1278
ApeKI GCWGC 6 cut(s) 550, 643, 685, 1361, 1390, 1393
ApoI RAATTY 3 cut(s) 249, 737, 966
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AseI ATTAAT 1 cut(s) 951
Asp718I GGTACC 1 cut(s) 1184
AspLEI GCGC 2 cut(s) 54, 1390
AspS9I GGNCC 1 cut(s) 1442
AsuC2I CCSGG 1 cut(s) 1371
AsuHPI GGTGA 3 cut(s) 824, 830, 875
AvaI CYCGRG 1 cut(s) 1247
AxyI CCTNAGG 1 cut(s) 1530
BaeGI GKGCMC 1 cut(s) 1282
BanI GGYRCC 1 cut(s) 1184
BanII GRGCYC 2 cut(s) 838, 1248
BbsI GAAGAC 2 cut(s) 753, 1127
Bbv12I GWGCWC 2 cut(s) 1248, 1282
BbvCI CCTCAGC 1 cut(s) 1428
BbvI GCAGC 6 cut(s) 562, 655, 697, 1348, 1380, 1402
BccI CCATC 4 cut(s) 391, 496, 685, 1162
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 2 cut(s) 1318, 1528
BclI TGATCA 2 cut(s) 436, 1149
BcnI CCSGG 1 cut(s) 1371
BcoDI GTCTC 4 cut(s) 565, 586, 610, 1067
BfaI CTAG 5 cut(s) 111, 359, 521, 632, 714
BfmI CTRYAG 1 cut(s) 1342
BfuI GTATCC 2 cut(s) 1318, 1528
BglII AGATCT 1 cut(s) 355
BisI GCNGC 7 cut(s) 551, 644, 686, 1362, 1391, 1394, 1397
BlsI GCNGC 7 cut(s) 552, 645, 687, 1363, 1392, 1395, 1398
Bme1390I CCNGG 2 cut(s) 726, 1371
BmeT110I CYCGRG 1 cut(s) 1247
BmgT120I GGNCC 1 cut(s) 1442
BmiI GGNNCC 2 cut(s) 286, 1186
BmrFI CCNGG 2 cut(s) 726, 1371
BmrI ACTGGG 2 cut(s) 892, 1612
BmsI GCATC 6 cut(s) 132, 307, 421, 535, 1078, 1423
BmuI ACTGGG 2 cut(s) 892, 1612
BpiI GAAGAC 2 cut(s) 753, 1127
Bpu10I CCTNAGC 2 cut(s) 672, 1428
BpuEI CTTGAG 2 cut(s) 336, 1589
BpuMI CCSGG 1 cut(s) 1371
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 1370
BsaWI WCCGGW 1 cut(s) 1333
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 878, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 1450
Bse1I ACTGG 4 cut(s) 158, 887, 1539, 1607
Bse21I CCTNAGG 1 cut(s) 1530
Bse3DI GCAATG 2 cut(s) 391, 729
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 1370
BseGI GGATG 5 cut(s) 100, 346, 373, 426, 526
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 1450
BseMI GCAATG 2 cut(s) 391, 729
BseMII CTCAG 4 cut(s) 663, 1310, 1419, 1521
BseNI ACTGG 4 cut(s) 158, 887, 1539, 1607
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 1282
BseXI GCAGC 6 cut(s) 562, 655, 697, 1348, 1380, 1402
BsgI GTGCAG 2 cut(s) 1529, 1576
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 1306, 1443
BshNI GGYRCC 1 cut(s) 1184
BsiHKAI GWGCWC 2 cut(s) 1248, 1282
BsiHKCI CYCGRG 1 cut(s) 1247
BsiSI CCGG 2 cut(s) 1334, 1370
BslFI GGGAC 4 cut(s) 884, 1199, 1264, 1387
BslI CCNNNNNNNGG 1 cut(s) 1450
BsmAI GTCTC 4 cut(s) 565, 586, 610, 1067
BsmFI GGGAC 4 cut(s) 884, 1199, 1264, 1387
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 2 cut(s) 1306, 1443
BsoBI CYCGRG 1 cut(s) 1247
Bsp1286I GDGCHC 3 cut(s) 838, 1248, 1282
Bsp1407I TGTACA 1 cut(s) 906
BspACI CCGC 3 cut(s) 54, 533, 1396
BspANI GGCC 2 cut(s) 1306, 1443
BspCNI CTCAG 4 cut(s) 664, 1311, 1420, 1522
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 286, 1186
BspPI GGATC 5 cut(s) 418, 921, 947, 1109, 1440
BspT107I GGYRCC 1 cut(s) 1184
BsrDI GCAATG 2 cut(s) 391, 729
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 4 cut(s) 158, 887, 1539, 1607
BssECI CCNNGG 1 cut(s) 1370
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 4 cut(s) 232, 660, 932, 980
BstAUI TGTACA 1 cut(s) 906
BstC8I GCNNGC 2 cut(s) 82, 86
BstDEI CTNAG 6 cut(s) 672, 849, 1179, 1319, 1428, 1530
BstF5I GGATG 5 cut(s) 100, 346, 373, 426, 526
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 2 cut(s) 54, 1390
BstMAI GTCTC 4 cut(s) 565, 586, 610, 1067
BstMWI GCNNNNNNNGC 4 cut(s) 523, 532, 682, 1396
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 2 cut(s) 92, 1286
BstSCI CCNGG 2 cut(s) 724, 1369
BstSFI CTRYAG 1 cut(s) 1342
BstSLI GKGCMC 1 cut(s) 1282
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 6 cut(s) 562, 655, 697, 1348, 1380, 1402
BstV2I GAAGAC 2 cut(s) 753, 1127
BstX2I RGATCY 2 cut(s) 355, 410
BstYI RGATCY 2 cut(s) 355, 410
Bsu36I CCTNAGG 1 cut(s) 1530
BsuI GTATCC 2 cut(s) 1318, 1528
BsuRI GGCC 2 cut(s) 1306, 1443
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 5 cut(s) 100, 346, 373, 426, 526
BtsI GCAGTG 1 cut(s) 1520
BtsIMutI CAGTG 3 cut(s) 237, 976, 1520
Cac8I GCNNGC 2 cut(s) 82, 86
CfoI GCGC 2 cut(s) 54, 1390
Cfr13I GGNCC 1 cut(s) 1442
Csp6I GTAC 4 cut(s) 46, 907, 1185, 1297
CspCI CAANNNNNGTGG 4 cut(s) 642, 677, 1072, 1107
CviAII CATG 9 cut(s) 89, 140, 221, 302, 337, 407, 774, 1066, 1283
CviQI GTAC 4 cut(s) 46, 907, 1185, 1297
DdeI CTNAG 6 cut(s) 672, 849, 1179, 1319, 1428, 1530
Ecl136II GAGCTC 1 cut(s) 1246
Eco24I GRGCYC 2 cut(s) 838, 1248
Eco32I GATATC 1 cut(s) 1231
Eco53kI GAGCTC 1 cut(s) 1246
Eco81I CCTNAGG 1 cut(s) 1530
Eco88I CYCGRG 1 cut(s) 1247
EcoICRI GAGCTC 1 cut(s) 1246
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 1231
EcoT22I ATGCAT 2 cut(s) 322, 1071
EcoT38I GRGCYC 2 cut(s) 838, 1248
FaeI CATG 9 cut(s) 92, 143, 224, 305, 340, 410, 777, 1069, 1286
FalI AAGNNNNNCTT 2 cut(s) 1348, 1380
FaqI GGGAC 4 cut(s) 884, 1199, 1264, 1387
FatI CATG 9 cut(s) 88, 139, 220, 301, 336, 406, 773, 1065, 1282
FauI CCCGC 1 cut(s) 540
FauNDI CATATG 1 cut(s) 1008
FbaI TGATCA 2 cut(s) 436, 1149
FblI GTMKAC 1 cut(s) 1564
Fnu4HI GCNGC 7 cut(s) 551, 644, 686, 1362, 1391, 1394, 1397
FokI GGATG 5 cut(s) 107, 353, 380, 433, 513
FriOI GRGCYC 2 cut(s) 838, 1248
Fsp4HI GCNGC 7 cut(s) 551, 644, 686, 1362, 1391, 1394, 1397
FspBI CTAG 5 cut(s) 111, 359, 521, 632, 714
GlaI GCGC 2 cut(s) 53, 1389
GluI GCNGC 7 cut(s) 551, 644, 686, 1362, 1391, 1394, 1397
HaeIII GGCC 2 cut(s) 1306, 1443
HapII CCGG 2 cut(s) 1334, 1370
HhaI GCGC 2 cut(s) 54, 1390
Hin1II CATG 9 cut(s) 92, 143, 224, 305, 340, 410, 777, 1069, 1286
Hin6I GCGC 2 cut(s) 52, 1388
HinP1I GCGC 2 cut(s) 52, 1388
HinfI GANTC 4 cut(s) 1060, 1175, 1337, 1375
HpaII CCGG 2 cut(s) 1334, 1370
HphI GGTGA 3 cut(s) 824, 830, 875
Hpy166II GTNNAC 5 cut(s) 909, 989, 1280, 1544, 1565
Hpy188I TCNGA 6 cut(s) 27, 441, 770, 927, 1137, 1380
Hpy188III TCNNGA 7 cut(s) 71, 211, 353, 359, 564, 1249, 1529
Hpy8I GTNNAC 5 cut(s) 909, 989, 1280, 1544, 1565
HpyAV CCTTC 3 cut(s) 772, 1021, 1252
HpyCH4III ACNGT 4 cut(s) 232, 660, 932, 980
HpyCH4IV ACGT 1 cut(s) 1038
HpyF10VI GCNNNNNNNGC 4 cut(s) 523, 532, 682, 1396
HpyF3I CTNAG 6 cut(s) 672, 849, 1179, 1319, 1428, 1530
HpySE526I ACGT 1 cut(s) 1038
Hsp92II CATG 9 cut(s) 92, 143, 224, 305, 340, 410, 777, 1069, 1286
HspAI GCGC 2 cut(s) 52, 1388
KpnI GGTACC 1 cut(s) 1188
Ksp22I TGATCA 2 cut(s) 436, 1149
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 6 cut(s) 562, 655, 697, 1348, 1380, 1402
LweI GCATC 6 cut(s) 132, 307, 421, 535, 1078, 1423
MaeI CTAG 5 cut(s) 111, 359, 521, 632, 714
MaeII ACGT 1 cut(s) 1038
MaeIII GTNAC 5 cut(s) 502, 863, 878, 1039, 1518
MflI RGATCY 2 cut(s) 355, 410
MhlI GDGCHC 3 cut(s) 838, 1248, 1282
MluCI AATT 8 cut(s) 249, 737, 785, 901, 966, 1054, 1223, 1461
MlyI GAGTC 2 cut(s) 1069, 1369
MmeI TCCRAC 1 cut(s) 262
Mph1103I ATGCAT 2 cut(s) 322, 1071
MseI TTAA 3 cut(s) 99, 951, 1497
MslI CAYNNNNRTG 3 cut(s) 93, 714, 981
MspA1I CMGCKG 1 cut(s) 1393
MspI CCGG 2 cut(s) 1334, 1370
MspR9I CCNGG 2 cut(s) 726, 1371
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 4 cut(s) 523, 532, 682, 1396
NciI CCSGG 1 cut(s) 1371
NdeI CATATG 1 cut(s) 1008
NlaIII CATG 9 cut(s) 92, 143, 224, 305, 340, 410, 777, 1069, 1286
NlaIV GGNNCC 2 cut(s) 286, 1186
NmuCI GTSAC 4 cut(s) 863, 878, 1039, 1518
NsiI ATGCAT 2 cut(s) 322, 1071
NspI RCATGY 2 cut(s) 92, 1286
OliI CACNNNNGTG 1 cut(s) 981
PciI ACATGT 1 cut(s) 1282
PcsI WCGNNNNNNNCGW 1 cut(s) 917
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 1175, 1337
PkrI GCNGC 7 cut(s) 552, 645, 687, 1363, 1392, 1395, 1398
PleI GAGTC 2 cut(s) 1068, 1369
PpsI GAGTC 2 cut(s) 1068, 1369
PscI ACATGT 1 cut(s) 1282
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 1248
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 2 cut(s) 286, 1186
PspPI GGNCC 1 cut(s) 1442
PsuI RGATCY 2 cut(s) 355, 410
PvuII CAGCTG 1 cut(s) 1393
RsaI GTAC 4 cut(s) 47, 908, 1186, 1298
RsaNI GTAC 4 cut(s) 46, 907, 1185, 1297
RseI CAYNNNNRTG 3 cut(s) 93, 714, 981
SacI GAGCTC 1 cut(s) 1248
SaqAI TTAA 3 cut(s) 99, 951, 1497
SatI GCNGC 7 cut(s) 551, 644, 686, 1362, 1391, 1394, 1397
Sau96I GGNCC 1 cut(s) 1442
SchI GAGTC 2 cut(s) 1069, 1369
ScrFI CCNGG 2 cut(s) 726, 1371
SduI GDGCHC 3 cut(s) 838, 1248, 1282
SfaNI GCATC 6 cut(s) 132, 307, 421, 535, 1078, 1423
SfcI CTRYAG 1 cut(s) 1342
SmiMI CAYNNNNRTG 3 cut(s) 93, 714, 981
SmlI CTYRAG 2 cut(s) 351, 1568
SmoI CTYRAG 2 cut(s) 351, 1568
Sse9I AATT 8 cut(s) 249, 737, 785, 901, 966, 1054, 1223, 1461
SsiI CCGC 3 cut(s) 54, 533, 1396
SspMI CTAG 5 cut(s) 111, 359, 521, 632, 714
SstI GAGCTC 1 cut(s) 1248
StyD4I CCNGG 2 cut(s) 724, 1369
TaaI ACNGT 4 cut(s) 232, 660, 932, 980
TaiI ACGT 1 cut(s) 1041
TaqI TCGA 2 cut(s) 197, 1273
TasI AATT 8 cut(s) 249, 737, 785, 901, 966, 1054, 1223, 1461
TatI WGTACW 3 cut(s) 45, 906, 1296
TauI GCSGC 1 cut(s) 1399
TfiI GAWTC 2 cut(s) 1175, 1337
Tru1I TTAA 3 cut(s) 99, 951, 1497
Tru9I TTAA 3 cut(s) 99, 951, 1497
TscAI CASTG 3 cut(s) 237, 983, 1527
TseFI GTSAC 4 cut(s) 863, 878, 1039, 1518
TseI GCWGC 6 cut(s) 550, 643, 685, 1361, 1390, 1393
Tsp45I GTSAC 4 cut(s) 863, 878, 1039, 1518
TspDTI ATGAA 5 cut(s) 402, 482, 770, 1122, 1271
TspGWI ACGGA 1 cut(s) 926
TspRI CASTG 3 cut(s) 237, 983, 1527
VneI GTGCAC 1 cut(s) 1278
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 3 cut(s) 249, 737, 966
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 2 cut(s) 92, 1286
XcmI CCANNNNNNNNNTGG 1 cut(s) 1165
XmiI GTMKAC 1 cut(s) 1564
XspI CTAG 5 cut(s) 111, 359, 521, 632, 714
Zsp2I ATGCAT 2 cut(s) 322, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.