Rh2CG392500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000090
Physical Location & Seq
Reverse (-)
53488023 .. 53490079
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG392500.1

Sequence Viewer

Length: 984 bp
ATGTTGAAACCGAAGTCATTATTGATGAAGAAGATTGGGAATAAGCCATCTGCCAAAAATATTACAACAGAGTTGCAACTAGAGCATCCCCCGCAACAACAGAAAAAGCAGCCACAACAATTAGGAAAGAGACTGCCACAACAACCAGCAAAGAGACAGCCACAACAACTAGGAAAGAGGCAGCCACAACCACCACAGTTGCAACAACCTGAGCCATCACAGCAGCGACAACCACAACCACCATTACATTCTAGTGAAAAACCTGGCATTGCAAAATTTGTTGAAGACAAGATGAATAACACATTCAGATCATGGAAGGGAAAATTGCACAGGGACATAAGTGATTGGGAGTGGTTGTATGATAATTTGTACACGGATCAAGCATATCAGAACCGTTATAGGATCAATACTATTAATAGGAACAAGAAAATTTATAATCACTGTGGTGGTTCACGCCCTTTCACAAAACATATGGAAGCCGAAGAACAGAAGGGTAAAAACGTGACCTTTATTGAGAATTGGAGTCTCATGCATCAACATAGAGGCAACAATGGTGGTGTTTGGATCAATGAAGAAGCAGAGAAGACAGGGAAAAATCTGATTGTAGAGTTGATCAAAACCAAGCAACAGATGGCTGATTCTGAGGGTACCCCACTTGAAGATGTTATAGTGCCTATCCCAATGCAATTAGATATCTTGGCTAAAGAGCTCGGGACTATGAAGGGTAAGACCATTCGAGATGTGGGTTATGGTCTTAGAAAAGACACATTCTGTCCTTCAGTCTCTACATCCACTTCAAACCCAACAAATGTTCAACTTATGAGGTACATTGTTTTATTAGAAGAGCGACTTGCTTCGCTTGAGGGTGAGAGACAACCTTCTACACATAATGTGGATGAAGAGGGAGTCGAGGATGGTAATGTGGATGAGGAGAATGATGAGGATGTGGAGAATGATGAGGATGAGGATTTGGATGTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

37.63

Weight (kDa)

6.12

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 126 - 216 3.2e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 647
AciI CCGC 1 cut(s) 92
AclWI GGATC 3 cut(s) 384, 410, 572
AcsI RAATTY 2 cut(s) 275, 429
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 3 cut(s) 371, 649, 827
AgsI TTSAA 5 cut(s) 7, 284, 659, 798, 815
AjnI CCWGG 1 cut(s) 262
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 1 cut(s) 709
AluI AGCT 1 cut(s) 709
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 5 cut(s) 124, 148, 530, 787, 865
AlwI GGATC 3 cut(s) 384, 410, 572
Ama87I CYCGRG 1 cut(s) 710
ApeKI GCWGC 3 cut(s) 109, 181, 223
ApoI RAATTY 2 cut(s) 275, 429
AseI ATTAAT 1 cut(s) 414
Asp718I GGTACC 1 cut(s) 647
AsuHPI GGTGA 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 710
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 711
BbsI GAAGAC 2 cut(s) 291, 590
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 121, 193, 235
BccI CCATC 4 cut(s) 55, 223, 625, 908
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 612
BcoDI GTCTC 5 cut(s) 124, 148, 530, 787, 865
BfaI CTAG 3 cut(s) 80, 170, 252
BisI GCNGC 3 cut(s) 110, 182, 224
BlsI GCNGC 3 cut(s) 111, 183, 225
Bme1390I CCNGG 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 94, 541
BpiI GAAGAC 2 cut(s) 291, 590
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 881
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 8 cut(s) 85, 788, 901, 919, 931, 949, 967, 979
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 201, 633
BseRI GAGGAG 1 cut(s) 944
BseXI GCAGC 3 cut(s) 121, 193, 235
BshNI GGYRCC 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 710
BslFI GGGAC 2 cut(s) 347, 727
BsmAI GTCTC 5 cut(s) 124, 148, 530, 787, 865
BsmFI GGGAC 2 cut(s) 347, 727
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 5 cut(s) 308, 376, 402, 564, 612
BspACI CCGC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 202, 634
BspLI GGNNCC 1 cut(s) 649
BspPI GGATC 3 cut(s) 384, 410, 572
BspQI GCTCTTC 1 cut(s) 837
BspT107I GGYRCC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 369
BssMI GATC 5 cut(s) 308, 376, 402, 564, 612
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 198, 395, 443
Bst6I CTCTTC 2 cut(s) 837, 894
BstAUI TGTACA 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 210, 642, 755
BstF5I GGATG 8 cut(s) 85, 788, 901, 919, 931, 949, 967, 979
BstKTI GATC 5 cut(s) 311, 379, 405, 567, 615
BstMAI GTCTC 5 cut(s) 124, 148, 530, 787, 865
BstMBI GATC 5 cut(s) 308, 376, 402, 564, 612
BstMWI GCNNNNNNNGC 3 cut(s) 82, 91, 220
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 121, 193, 235
BstV2I GAAGAC 2 cut(s) 291, 590
BtsCI GGATG 8 cut(s) 85, 788, 901, 919, 931, 949, 967, 979
BtsIMutI CAGTG 1 cut(s) 439
Csp6I GTAC 3 cut(s) 370, 648, 826
CspCI CAANNNNNGTGG 4 cut(s) 180, 215, 535, 570
CviAII CATG 2 cut(s) 312, 529
CviJI RGCY 9 cut(s) 46, 112, 160, 184, 214, 479, 635, 701, 709
CviKI_1 RGCY 9 cut(s) 46, 112, 160, 184, 214, 479, 635, 701, 709
CviQI GTAC 3 cut(s) 370, 648, 826
DdeI CTNAG 3 cut(s) 210, 642, 755
DpnI GATC 5 cut(s) 310, 378, 404, 566, 614
DpnII GATC 5 cut(s) 308, 376, 402, 564, 612
Eam1104I CTCTTC 2 cut(s) 837, 894
EarI CTCTTC 2 cut(s) 837, 894
Ecl136II GAGCTC 1 cut(s) 709
Eco24I GRGCYC 1 cut(s) 711
Eco32I GATATC 1 cut(s) 694
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 262
EcoRV GATATC 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 711
FaeI CATG 2 cut(s) 315, 532
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 2 cut(s) 347, 727
FatI CATG 2 cut(s) 311, 528
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 471
FbaI TGATCA 1 cut(s) 612
Fnu4HI GCNGC 3 cut(s) 110, 182, 224
FokI GGATG 7 cut(s) 72, 775, 908, 926, 938, 956, 974
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 3 cut(s) 110, 182, 224
FspBI CTAG 3 cut(s) 80, 170, 252
GluI GCNGC 3 cut(s) 110, 182, 224
Hin1II CATG 2 cut(s) 315, 532
HinfI GANTC 3 cut(s) 523, 638, 906
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 2 cut(s) 372, 452
Hpy188I TCNGA 4 cut(s) 308, 390, 600, 643
Hpy188III TCNNGA 2 cut(s) 712, 737
Hpy8I GTNNAC 2 cut(s) 372, 452
HpyAV CCTTC 5 cut(s) 310, 484, 715, 786, 888
HpyCH4III ACNGT 3 cut(s) 198, 395, 443
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 6 cut(s) 76, 202, 272, 328, 532, 685
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 91, 220
HpyF3I CTNAG 3 cut(s) 210, 642, 755
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 2 cut(s) 315, 532
KpnI GGTACC 1 cut(s) 651
Ksp22I TGATCA 1 cut(s) 612
Kzo9I GATC 5 cut(s) 308, 376, 402, 564, 612
LguI GCTCTTC 1 cut(s) 837
LpnPI CCDG 6 cut(s) 159, 222, 249, 276, 316, 573
Lsp1109I GCAGC 3 cut(s) 121, 193, 235
LweI GCATC 2 cut(s) 94, 541
MaeI CTAG 3 cut(s) 80, 170, 252
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 502
MalI GATC 5 cut(s) 310, 378, 404, 566, 614
MboI GATC 5 cut(s) 308, 376, 402, 564, 612
MboII GAAGA 9 cut(s) 40, 43, 296, 494, 584, 595, 671, 854, 911
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 7 cut(s) 119, 275, 323, 364, 429, 517, 686
MlyI GAGTC 2 cut(s) 532, 915
Mph1103I ATGCAT 1 cut(s) 534
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 252, 444
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 82, 91, 220
NdeI CATATG 1 cut(s) 471
NdeII GATC 5 cut(s) 308, 376, 402, 564, 612
NlaIII CATG 2 cut(s) 315, 532
NlaIV GGNNCC 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 502
NsiI ATGCAT 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 837
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 3 cut(s) 111, 183, 225
PleI GAGTC 2 cut(s) 531, 914
PpsI GAGTC 2 cut(s) 531, 914
PshBI ATTAAT 1 cut(s) 414
PsiI TTATAA 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 649
RsaI GTAC 3 cut(s) 371, 649, 827
RsaNI GTAC 3 cut(s) 370, 648, 826
RseI CAYNNNNRTG 2 cut(s) 252, 444
SacI GAGCTC 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 110, 182, 224
Sau3AI GATC 5 cut(s) 308, 376, 402, 564, 612
SchI GAGTC 2 cut(s) 532, 915
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 711
SetI ASST 7 cut(s) 211, 265, 504, 509, 711, 827, 880
SfaNI GCATC 2 cut(s) 94, 541
SmiMI CAYNNNNRTG 2 cut(s) 252, 444
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 7 cut(s) 119, 275, 323, 364, 429, 517, 686
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 61
SspMI CTAG 3 cut(s) 80, 170, 252
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 198, 395, 443
TaiI ACGT 1 cut(s) 504
TaqI TCGA 2 cut(s) 736, 909
TasI AATT 7 cut(s) 119, 275, 323, 364, 429, 517, 686
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 446
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 3 cut(s) 109, 181, 223
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 5 cut(s) 41, 308, 585, 734, 912
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 1 cut(s) 446
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 2 cut(s) 275, 429
XcmI CCANNNNNNNNNTGG 2 cut(s) 628, 739
XspI CTAG 3 cut(s) 80, 170, 252
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.