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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 574 |
| AccII | CGCG | 1 cut(s) | 616 |
| AciI | CCGC | 2 cut(s) | 102, 793 |
| AclWI | GGATC | 1 cut(s) | 410 |
| AcuI | CTGAAG | 2 cut(s) | 660, 857 |
| AfaI | GTAC | 4 cut(s) | 204, 586, 603, 894 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 108 |
| AgsI | TTSAA | 6 cut(s) | 80, 283, 483, 720, 773, 826 |
| AjiI | CACGTC | 1 cut(s) | 214 |
| AjnI | CCWGG | 1 cut(s) | 163 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 651, 683 |
| AluBI | AGCT | 6 cut(s) | 131, 467, 700, 725, 769, 811 |
| AluI | AGCT | 6 cut(s) | 131, 467, 700, 725, 769, 811 |
| Alw21I | GWGCWC | 1 cut(s) | 133 |
| AlwI | GGATC | 1 cut(s) | 410 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 599 |
| ApeKI | GCWGC | 2 cut(s) | 464, 852 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 830 |
| AspLEI | GCGC | 2 cut(s) | 264, 616 |
| AsuHPI | GGTGA | 1 cut(s) | 377 |
| AsuII | TTCGAA | 1 cut(s) | 121 |
| BanI | GGYRCC | 1 cut(s) | 574 |
| BanII | GRGCYC | 1 cut(s) | 133 |
| BbsI | GAAGAC | 1 cut(s) | 939 |
| Bbv12I | GWGCWC | 1 cut(s) | 133 |
| BbvI | GCAGC | 2 cut(s) | 476, 839 |
| BccI | CCATC | 1 cut(s) | 144 |
| BciT130I | CCWGG | 1 cut(s) | 165 |
| BfaI | CTAG | 1 cut(s) | 569 |
| BfmI | CTRYAG | 1 cut(s) | 105 |
| BisI | GCNGC | 2 cut(s) | 465, 853 |
| BlsI | GCNGC | 2 cut(s) | 466, 854 |
| Bme1390I | CCNGG | 1 cut(s) | 165 |
| BmgBI | CACGTC | 1 cut(s) | 214 |
| BmiI | GGNNCC | 1 cut(s) | 576 |
| BmrFI | CCNGG | 1 cut(s) | 165 |
| BmsI | GCATC | 1 cut(s) | 249 |
| BpiI | GAAGAC | 1 cut(s) | 939 |
| Bpu14I | TTCGAA | 1 cut(s) | 121 |
| BsaBI | GATNNNNATC | 1 cut(s) | 629 |
| BsaJI | CCNNGG | 2 cut(s) | 145, 847 |
| BsaWI | WCCGGW | 1 cut(s) | 133 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 108 |
| Bse8I | GATNNNNATC | 1 cut(s) | 629 |
| BseBI | CCWGG | 1 cut(s) | 165 |
| BseDI | CCNNGG | 2 cut(s) | 145, 847 |
| BseGI | GGATG | 3 cut(s) | 155, 226, 256 |
| BseJI | GATNNNNATC | 1 cut(s) | 629 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 108 |
| BseMII | CTCAG | 1 cut(s) | 726 |
| BseRI | GAGGAG | 1 cut(s) | 395 |
| BseXI | GCAGC | 2 cut(s) | 476, 839 |
| Bsh1236I | CGCG | 1 cut(s) | 616 |
| BshNI | GGYRCC | 1 cut(s) | 574 |
| BsiHKAI | GWGCWC | 1 cut(s) | 133 |
| BsiSI | CCGG | 1 cut(s) | 134 |
| BslFI | GGGAC | 1 cut(s) | 345 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 108 |
| BsmFI | GGGAC | 1 cut(s) | 345 |
| Bsp119I | TTCGAA | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 1 cut(s) | 133 |
| Bsp1407I | TGTACA | 1 cut(s) | 601 |
| Bsp143I | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| BspACI | CCGC | 2 cut(s) | 102, 793 |
| BspCNI | CTCAG | 1 cut(s) | 727 |
| BspFNI | CGCG | 1 cut(s) | 616 |
| BspLI | GGNNCC | 1 cut(s) | 576 |
| BspPI | GGATC | 1 cut(s) | 410 |
| BspQI | GCTCTTC | 1 cut(s) | 540 |
| BspT104I | TTCGAA | 1 cut(s) | 121 |
| BspT107I | GGYRCC | 1 cut(s) | 574 |
| BsrGI | TGTACA | 1 cut(s) | 601 |
| BssECI | CCNNGG | 2 cut(s) | 145, 847 |
| BssMI | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| BssT1I | CCWWGG | 1 cut(s) | 847 |
| Bst2UI | CCWGG | 1 cut(s) | 165 |
| Bst4CI | ACNGT | 5 cut(s) | 146, 202, 709, 781, 902 |
| Bst6I | CTCTTC | 3 cut(s) | 540, 636, 919 |
| BstAUI | TGTACA | 1 cut(s) | 601 |
| BstBI | TTCGAA | 1 cut(s) | 121 |
| BstDEI | CTNAG | 1 cut(s) | 735 |
| BstDSI | CCRYGG | 1 cut(s) | 145 |
| BstF5I | GGATG | 3 cut(s) | 155, 226, 256 |
| BstFNI | CGCG | 1 cut(s) | 616 |
| BstHHI | GCGC | 2 cut(s) | 264, 616 |
| BstKTI | GATC | 5 cut(s) | 301, 358, 374, 418, 526 |
| BstMBI | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 852 |
| BstNI | CCWGG | 1 cut(s) | 165 |
| BstSCI | CCNGG | 1 cut(s) | 163 |
| BstSFI | CTRYAG | 1 cut(s) | 105 |
| BstUI | CGCG | 1 cut(s) | 616 |
| BstV1I | GCAGC | 2 cut(s) | 476, 839 |
| BstV2I | GAAGAC | 1 cut(s) | 939 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 314, 950 |
| BtgI | CCRYGG | 1 cut(s) | 145 |
| BtrI | CACGTC | 1 cut(s) | 214 |
| BtsCI | GGATG | 3 cut(s) | 155, 226, 256 |
| BtsIMutI | CAGTG | 1 cut(s) | 907 |
| CaiI | CAGNNNCTG | 1 cut(s) | 599 |
| CfoI | GCGC | 2 cut(s) | 264, 616 |
| Csp6I | GTAC | 4 cut(s) | 203, 585, 602, 893 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 266, 301 |
| CviAII | CATG | 3 cut(s) | 634, 694, 880 |
| CviQI | GTAC | 4 cut(s) | 203, 585, 602, 893 |
| DdeI | CTNAG | 1 cut(s) | 735 |
| DpnI | GATC | 5 cut(s) | 300, 357, 373, 417, 525 |
| DpnII | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| Eam1104I | CTCTTC | 3 cut(s) | 540, 636, 919 |
| EarI | CTCTTC | 3 cut(s) | 540, 636, 919 |
| Ecl136II | GAGCTC | 1 cut(s) | 131 |
| Eco130I | CCWWGG | 1 cut(s) | 847 |
| Eco24I | GRGCYC | 1 cut(s) | 133 |
| Eco53kI | GAGCTC | 1 cut(s) | 131 |
| Eco57I | CTGAAG | 2 cut(s) | 660, 857 |
| EcoICRI | GAGCTC | 1 cut(s) | 131 |
| EcoRII | CCWGG | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 1 cut(s) | 847 |
| EcoT38I | GRGCYC | 1 cut(s) | 133 |
| ErhI | CCWWGG | 1 cut(s) | 847 |
| FaeI | CATG | 3 cut(s) | 637, 697, 883 |
| FaqI | GGGAC | 1 cut(s) | 345 |
| FatI | CATG | 3 cut(s) | 633, 693, 879 |
| Fnu4HI | GCNGC | 2 cut(s) | 465, 853 |
| FokI | GGATG | 3 cut(s) | 162, 213, 263 |
| FriOI | GRGCYC | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 2 cut(s) | 465, 853 |
| FspBI | CTAG | 1 cut(s) | 569 |
| GlaI | GCGC | 2 cut(s) | 263, 615 |
| GluI | GCNGC | 2 cut(s) | 465, 853 |
| HapII | CCGG | 1 cut(s) | 134 |
| HhaI | GCGC | 2 cut(s) | 264, 616 |
| Hin1II | CATG | 3 cut(s) | 637, 697, 883 |
| Hin6I | GCGC | 2 cut(s) | 262, 614 |
| HinP1I | GCGC | 2 cut(s) | 262, 614 |
| HindIII | AAGCTT | 1 cut(s) | 767 |
| HinfI | GANTC | 7 cut(s) | 22, 54, 160, 479, 596, 625, 773 |
| HpaII | CCGG | 1 cut(s) | 134 |
| HphI | GGTGA | 1 cut(s) | 377 |
| Hpy166II | GTNNAC | 4 cut(s) | 96, 205, 350, 784 |
| Hpy188I | TCNGA | 2 cut(s) | 736, 964 |
| Hpy188III | TCNNGA | 2 cut(s) | 476, 835 |
| Hpy8I | GTNNAC | 4 cut(s) | 96, 205, 350, 784 |
| HpyAV | CCTTC | 4 cut(s) | 74, 575, 645, 649 |
| HpyCH4III | ACNGT | 5 cut(s) | 146, 202, 709, 781, 902 |
| HpyCH4IV | ACGT | 3 cut(s) | 213, 511, 936 |
| HpyCH4V | TGCA | 4 cut(s) | 66, 295, 751, 806 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 852 |
| HpyF3I | CTNAG | 1 cut(s) | 735 |
| HpySE526I | ACGT | 3 cut(s) | 213, 511, 936 |
| Hsp92II | CATG | 3 cut(s) | 637, 697, 883 |
| HspAI | GCGC | 2 cut(s) | 262, 614 |
| Kzo9I | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| LguI | GCTCTTC | 1 cut(s) | 540 |
| LmnI | GCTCC | 2 cut(s) | 136, 697 |
| LpnPI | CCDG | 7 cut(s) | 147, 150, 177, 366, 591, 606, 848 |
| Lsp1109I | GCAGC | 2 cut(s) | 476, 839 |
| LweI | GCATC | 1 cut(s) | 249 |
| MaeI | CTAG | 1 cut(s) | 569 |
| MaeII | ACGT | 3 cut(s) | 213, 511, 936 |
| MaeIII | GTNAC | 4 cut(s) | 140, 607, 709, 795 |
| MalI | GATC | 5 cut(s) | 300, 357, 373, 417, 525 |
| MboI | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| MfeI | CAATTG | 2 cut(s) | 457, 490 |
| MhlI | GDGCHC | 1 cut(s) | 133 |
| MluCI | AATT | 5 cut(s) | 234, 278, 457, 490, 958 |
| MlyI | GAGTC | 1 cut(s) | 48 |
| MmeI | TCCRAC | 1 cut(s) | 728 |
| MnlI | CCTC | 9 cut(s) | 109, 171, 184, 373, 424, 565, 699, 964, 973 |
| MroXI | GAANNNNTTC | 1 cut(s) | 830 |
| MseI | TTAA | 1 cut(s) | 174 |
| MslI | CAYNNNNRTG | 1 cut(s) | 878 |
| MspA1I | CMGCKG | 1 cut(s) | 725 |
| MspI | CCGG | 1 cut(s) | 134 |
| MspR9I | CCNGG | 1 cut(s) | 165 |
| MunI | CAATTG | 2 cut(s) | 457, 490 |
| MvaI | CCWGG | 1 cut(s) | 165 |
| MvnI | CGCG | 1 cut(s) | 616 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 852 |
| NdeII | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| NlaIII | CATG | 3 cut(s) | 637, 697, 883 |
| NlaIV | GGNNCC | 1 cut(s) | 576 |
| NmeAIII | GCCGAG | 1 cut(s) | 245 |
| NmuCI | GTSAC | 1 cut(s) | 795 |
| NspV | TTCGAA | 1 cut(s) | 121 |
| PciSI | GCTCTTC | 1 cut(s) | 540 |
| PdmI | GAANNNNTTC | 1 cut(s) | 830 |
| PfeI | GAWTC | 6 cut(s) | 22, 160, 479, 596, 625, 773 |
| PflFI | GACNNNGTC | 1 cut(s) | 938 |
| PfoI | TCCNGGA | 1 cut(s) | 163 |
| PkrI | GCNGC | 2 cut(s) | 466, 854 |
| PleI | GAGTC | 1 cut(s) | 48 |
| PpsI | GAGTC | 1 cut(s) | 48 |
| Psp124BI | GAGCTC | 1 cut(s) | 133 |
| Psp6I | CCWGG | 1 cut(s) | 163 |
| PspGI | CCWGG | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 1 cut(s) | 576 |
| PstNI | CAGNNNCTG | 1 cut(s) | 599 |
| PsyI | GACNNNGTC | 1 cut(s) | 938 |
| PvuII | CAGCTG | 1 cut(s) | 725 |
| RsaI | GTAC | 4 cut(s) | 204, 586, 603, 894 |
| RsaNI | GTAC | 4 cut(s) | 203, 585, 602, 893 |
| RseI | CAYNNNNRTG | 1 cut(s) | 878 |
| SacI | GAGCTC | 1 cut(s) | 133 |
| SapI | GCTCTTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| SatI | GCNGC | 2 cut(s) | 465, 853 |
| Sau3AI | GATC | 5 cut(s) | 298, 355, 371, 415, 523 |
| SchI | GAGTC | 1 cut(s) | 48 |
| ScrFI | CCNGG | 1 cut(s) | 165 |
| SduI | GDGCHC | 1 cut(s) | 133 |
| SfaNI | GCATC | 1 cut(s) | 249 |
| SfcI | CTRYAG | 1 cut(s) | 105 |
| SfuI | TTCGAA | 1 cut(s) | 121 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 878 |
| Sse9I | AATT | 5 cut(s) | 234, 278, 457, 490, 958 |
| SsiI | CCGC | 2 cut(s) | 102, 793 |
| SspI | AATATT | 2 cut(s) | 172, 886 |
| SspMI | CTAG | 1 cut(s) | 569 |
| SstI | GAGCTC | 1 cut(s) | 133 |
| StyD4I | CCNGG | 1 cut(s) | 163 |
| StyI | CCWWGG | 1 cut(s) | 847 |
| TaaI | ACNGT | 5 cut(s) | 146, 202, 709, 781, 902 |
| TaiI | ACGT | 3 cut(s) | 216, 514, 939 |
| TaqI | TCGA | 5 cut(s) | 52, 121, 127, 374, 526 |
| TasI | AATT | 5 cut(s) | 234, 278, 457, 490, 958 |
| TatI | WGTACW | 1 cut(s) | 601 |
| TfiI | GAWTC | 6 cut(s) | 22, 160, 479, 596, 625, 773 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TscAI | CASTG | 1 cut(s) | 907 |
| TseFI | GTSAC | 1 cut(s) | 795 |
| TseI | GCWGC | 2 cut(s) | 464, 852 |
| Tsp45I | GTSAC | 1 cut(s) | 795 |
| TspDTI | ATGAA | 6 cut(s) | 24, 62, 439, 755, 896, 945 |
| TspRI | CASTG | 1 cut(s) | 907 |
| Tth111I | GACNNNGTC | 1 cut(s) | 938 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 830 |
| XspI | CTAG | 1 cut(s) | 569 |