Plant transposase (Ptta/En/Spm family)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 30 - 91 | 6.2e-10 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 462 |
| AccIII | TCCGGA | 1 cut(s) | 578 |
| AciI | CCGC | 1 cut(s) | 528 |
| AclWI | GGATC | 4 cut(s) | 141, 327, 340, 550 |
| AcuI | CTGAAG | 1 cut(s) | 494 |
| AcyI | GRCGYC | 1 cut(s) | 459 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 449 |
| AgsI | TTSAA | 1 cut(s) | 425 |
| AhlI | ACTAGT | 2 cut(s) | 314, 359 |
| AjnI | CCWGG | 2 cut(s) | 92, 414 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 59, 91 |
| AluBI | AGCT | 4 cut(s) | 53, 199, 562, 584 |
| AluI | AGCT | 4 cut(s) | 53, 199, 562, 584 |
| Alw21I | GWGCWC | 3 cut(s) | 450, 502, 564 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| Alw44I | GTGCAC | 2 cut(s) | 446, 498 |
| AlwI | GGATC | 4 cut(s) | 141, 327, 340, 550 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| Aor13HI | TCCGGA | 1 cut(s) | 578 |
| ApaLI | GTGCAC | 2 cut(s) | 446, 498 |
| ApeKI | GCWGC | 3 cut(s) | 50, 293, 584 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 332, 364 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 1 cut(s) | 404 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 1 cut(s) | 354 |
| BaeGI | GKGCMC | 4 cut(s) | 164, 306, 450, 502 |
| BamHI | GGATCC | 1 cut(s) | 332 |
| BanII | GRGCYC | 2 cut(s) | 262, 564 |
| BauI | CACGAG | 1 cut(s) | 182 |
| BbsI | GAAGAC | 1 cut(s) | 482 |
| Bbv12I | GWGCWC | 3 cut(s) | 450, 502, 564 |
| BbvI | GCAGC | 3 cut(s) | 62, 280, 571 |
| BccI | CCATC | 2 cut(s) | 368, 583 |
| BceAI | ACGGC | 2 cut(s) | 72, 466 |
| BciT130I | CCWGG | 2 cut(s) | 94, 416 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BcuI | ACTAGT | 2 cut(s) | 314, 359 |
| BfaI | CTAG | 3 cut(s) | 315, 360, 592 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 3 cut(s) | 51, 294, 585 |
| BlpI | GCTNAGC | 1 cut(s) | 563 |
| BlsI | GCNGC | 3 cut(s) | 52, 295, 586 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 416 |
| Bme18I | GGWCC | 1 cut(s) | 354 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 354 |
| BmiI | GGNNCC | 4 cut(s) | 6, 245, 334, 355 |
| BmrFI | CCNGG | 2 cut(s) | 94, 416 |
| BpiI | GAAGAC | 1 cut(s) | 482 |
| BpmI | CTGGAG | 4 cut(s) | 93, 179, 282, 531 |
| Bpu10I | CCTNAGC | 1 cut(s) | 523 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 563 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 578 |
| BsaHI | GRCGYC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 2 cut(s) | 486, 538 |
| BsaWI | WCCGGW | 1 cut(s) | 578 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 449 |
| Bse1I | ACTGG | 3 cut(s) | 205, 299, 548 |
| BseAI | TCCGGA | 1 cut(s) | 578 |
| BseBI | CCWGG | 2 cut(s) | 94, 416 |
| BseDI | CCNNGG | 2 cut(s) | 486, 538 |
| BseGI | GGATG | 2 cut(s) | 386, 575 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BseMII | CTCAG | 2 cut(s) | 537, 577 |
| BseNI | ACTGG | 3 cut(s) | 205, 299, 548 |
| BseRI | GAGGAG | 3 cut(s) | 44, 417, 420 |
| BseSI | GKGCMC | 4 cut(s) | 164, 306, 450, 502 |
| BseXI | GCAGC | 3 cut(s) | 62, 280, 571 |
| BsiHKAI | GWGCWC | 3 cut(s) | 450, 502, 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 579 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 6 cut(s) | 164, 262, 306, 450, 502, 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 578 |
| Bsp143I | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 563 |
| BspACI | CCGC | 1 cut(s) | 528 |
| BspCNI | CTCAG | 2 cut(s) | 536, 576 |
| BspEI | TCCGGA | 1 cut(s) | 578 |
| BspLI | GGNNCC | 4 cut(s) | 6, 245, 334, 355 |
| BspPI | GGATC | 4 cut(s) | 141, 327, 340, 550 |
| BsrI | ACTGG | 3 cut(s) | 205, 299, 548 |
| BssECI | CCNNGG | 2 cut(s) | 486, 538 |
| BssMI | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| BssNI | GRCGYC | 1 cut(s) | 459 |
| BssSI | CACGAG | 1 cut(s) | 182 |
| Bst2BI | CACGAG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 416 |
| Bst4CI | ACNGT | 1 cut(s) | 539 |
| Bst6I | CTCTTC | 1 cut(s) | 435 |
| BstACI | GRCGYC | 1 cut(s) | 459 |
| BstDEI | CTNAG | 2 cut(s) | 523, 563 |
| BstDSI | CCRYGG | 1 cut(s) | 538 |
| BstEII | GGTNACC | 1 cut(s) | 467 |
| BstF5I | GGATG | 2 cut(s) | 386, 575 |
| BstKTI | GATC | 5 cut(s) | 136, 189, 335, 412, 545 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| BstNI | CCWGG | 2 cut(s) | 94, 416 |
| BstNSI | RCATGY | 1 cut(s) | 218 |
| BstPI | GGTNACC | 1 cut(s) | 467 |
| BstSCI | CCNGG | 2 cut(s) | 92, 414 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstSLI | GKGCMC | 4 cut(s) | 164, 306, 450, 502 |
| BstV1I | GCAGC | 3 cut(s) | 62, 280, 571 |
| BstV2I | GAAGAC | 1 cut(s) | 482 |
| BstX2I | RGATCY | 4 cut(s) | 133, 186, 332, 542 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 53 |
| BstYI | RGATCY | 4 cut(s) | 133, 186, 332, 542 |
| BtgI | CCRYGG | 1 cut(s) | 538 |
| BtsCI | GGATG | 2 cut(s) | 386, 575 |
| BtsIMutI | CAGTG | 1 cut(s) | 306 |
| Cfr13I | GGNCC | 1 cut(s) | 354 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviAII | CATG | 4 cut(s) | 70, 215, 307, 503 |
| CviJI | RGCY | 9 cut(s) | 53, 87, 199, 260, 293, 522, 562, 567, 584 |
| CviKI_1 | RGCY | 9 cut(s) | 53, 87, 199, 260, 293, 522, 562, 567, 584 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DdeI | CTNAG | 2 cut(s) | 523, 563 |
| DpnI | GATC | 5 cut(s) | 135, 188, 334, 411, 544 |
| DpnII | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| Eam1104I | CTCTTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 1 cut(s) | 435 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 2 cut(s) | 262, 564 |
| Eco47I | GGWCC | 1 cut(s) | 354 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco57I | CTGAAG | 1 cut(s) | 494 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| Eco91I | GGTNACC | 1 cut(s) | 467 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoO65I | GGTNACC | 1 cut(s) | 467 |
| EcoRII | CCWGG | 2 cut(s) | 92, 414 |
| EcoT38I | GRGCYC | 2 cut(s) | 262, 564 |
| FaeI | CATG | 4 cut(s) | 73, 218, 310, 506 |
| FaiI | YATR | 6 cut(s) | 71, 144, 210, 216, 308, 504 |
| FatI | CATG | 4 cut(s) | 69, 214, 306, 502 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 294, 585 |
| FokI | GGATG | 2 cut(s) | 373, 562 |
| FriOI | GRGCYC | 2 cut(s) | 262, 564 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 294, 585 |
| FspBI | CTAG | 3 cut(s) | 315, 360, 592 |
| GluI | GCNGC | 3 cut(s) | 51, 294, 585 |
| GsuI | CTGGAG | 4 cut(s) | 93, 179, 282, 531 |
| HapII | CCGG | 1 cut(s) | 579 |
| Hin1I | GRCGYC | 1 cut(s) | 459 |
| Hin1II | CATG | 4 cut(s) | 73, 218, 310, 506 |
| HinfI | GANTC | 3 cut(s) | 100, 123, 178 |
| HpaII | CCGG | 1 cut(s) | 579 |
| HphI | GGTGA | 1 cut(s) | 404 |
| Hpy166II | GTNNAC | 3 cut(s) | 357, 448, 500 |
| Hpy188I | TCNGA | 1 cut(s) | 487 |
| Hpy188III | TCNNGA | 6 cut(s) | 110, 182, 247, 263, 557, 579 |
| Hpy8I | GTNNAC | 3 cut(s) | 357, 448, 500 |
| HpyAV | CCTTC | 1 cut(s) | 485 |
| HpyCH4III | ACNGT | 1 cut(s) | 539 |
| HpyCH4IV | ACGT | 2 cut(s) | 252, 459 |
| HpyCH4V | TGCA | 3 cut(s) | 394, 448, 500 |
| HpyF3I | CTNAG | 2 cut(s) | 523, 563 |
| HpySE526I | ACGT | 2 cut(s) | 252, 459 |
| Hsp92I | GRCGYC | 1 cut(s) | 459 |
| Hsp92II | CATG | 4 cut(s) | 73, 218, 310, 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 578 |
| Kzo9I | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| LmnI | GCTCC | 2 cut(s) | 301, 581 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 280, 571 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 3 cut(s) | 315, 360, 592 |
| MaeII | ACGT | 2 cut(s) | 252, 459 |
| MaeIII | GTNAC | 2 cut(s) | 467, 530 |
| MalI | GATC | 5 cut(s) | 135, 188, 334, 411, 544 |
| MboI | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| MboII | GAAGA | 2 cut(s) | 422, 487 |
| MflI | RGATCY | 4 cut(s) | 133, 186, 332, 542 |
| MhlI | GDGCHC | 6 cut(s) | 164, 262, 306, 450, 502, 564 |
| MluCI | AATT | 1 cut(s) | 346 |
| MroI | TCCGGA | 1 cut(s) | 578 |
| MroXI | GAANNNNTTC | 1 cut(s) | 316 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 2 cut(s) | 53, 199 |
| MspI | CCGG | 1 cut(s) | 579 |
| MspR9I | CCNGG | 2 cut(s) | 94, 416 |
| MvaI | CCWGG | 2 cut(s) | 94, 416 |
| NdeII | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| NlaIII | CATG | 4 cut(s) | 73, 218, 310, 506 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 245, 334, 355 |
| NspI | RCATGY | 1 cut(s) | 218 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 456 |
| PdmI | GAANNNNTTC | 1 cut(s) | 316 |
| PfeI | GAWTC | 3 cut(s) | 100, 123, 178 |
| PkrI | GCNGC | 3 cut(s) | 52, 295, 586 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 2 cut(s) | 92, 414 |
| PspEI | GGTNACC | 1 cut(s) | 467 |
| PspGI | CCWGG | 2 cut(s) | 92, 414 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 245, 334, 355 |
| PspPI | GGNCC | 1 cut(s) | 354 |
| PsuI | RGATCY | 4 cut(s) | 133, 186, 332, 542 |
| PvuII | CAGCTG | 2 cut(s) | 53, 199 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 3 cut(s) | 51, 294, 585 |
| Sau3AI | GATC | 5 cut(s) | 133, 186, 332, 409, 542 |
| Sau96I | GGNCC | 1 cut(s) | 354 |
| ScrFI | CCNGG | 2 cut(s) | 94, 416 |
| SduI | GDGCHC | 6 cut(s) | 164, 262, 306, 450, 502, 564 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SinI | GGWCC | 1 cut(s) | 354 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 3 cut(s) | 128, 261, 557 |
| SmoI | CTYRAG | 3 cut(s) | 128, 261, 557 |
| SpeI | ACTAGT | 2 cut(s) | 314, 359 |
| Sse9I | AATT | 1 cut(s) | 346 |
| SsiI | CCGC | 1 cut(s) | 528 |
| SspMI | CTAG | 3 cut(s) | 315, 360, 592 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 2 cut(s) | 92, 414 |
| TaaI | ACNGT | 1 cut(s) | 539 |
| TaiI | ACGT | 2 cut(s) | 255, 462 |
| TaqI | TCGA | 1 cut(s) | 262 |
| TasI | AATT | 1 cut(s) | 346 |
| TfiI | GAWTC | 3 cut(s) | 100, 123, 178 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 306 |
| TseI | GCWGC | 3 cut(s) | 50, 293, 584 |
| TspDTI | ATGAA | 1 cut(s) | 290 |
| TspRI | CASTG | 1 cut(s) | 306 |
| VneI | GTGCAC | 2 cut(s) | 446, 498 |
| VpaK11BI | GGWCC | 1 cut(s) | 354 |
| XceI | RCATGY | 1 cut(s) | 218 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 1 cut(s) | 316 |
| XspI | CTAG | 3 cut(s) | 315, 360, 592 |
| ZraI | GACGTC | 1 cut(s) | 460 |