Rorug04G0060900

Ion channel CASTOR-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000090
Physical Location & Seq
Forward (+)
9563824 .. 9569888
6065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0060900.1

Sequence Viewer

Length: 1380 bp
ATGTCTTCTCTTTCTTCAATTCCTCTCTCACTCTCCATCGTTTCCTCATCTTCATCTTCATCTTCATCTAAAGGAACACAAGGTAAACCCAACTCAAAGTCACTGAAGCTTAGAGAGGACTGGAGACAACGCTCCAAACCCATTCCTCCTGGTGGCACTTACCCAGCTAAAGACCACTGCAGTCGTTGCGGGTTGTGTGACACCTATTACATTGCCCATGTCAAGGAAGCCTGTGCTTTTTTGGGAGATGGGATGTCCAAGATTGAAGGTTTGGAACCTGTAGTTCATGGTAGAGGGAGAAAGCCAGACTCTTTAGATGAAATGCACTTGGGTGTCTATGAGGAGTTGTTGTATGCCCGTAAGGTCAAGCCTGTTGAAGGTGCTCAGTGGACGGGGATAGTAACAACTATTGCAATAGAAATGCTAAAATCAGGCATGGTAGAAGCTGTCATATGTGTTCAGAGTGACCCAGAGGACAGATTTTCTCCAAGGCCTGTATTAGCAAGGACACCGGAAGAAGTTCTAGCTGCTAAAGGTGTCAAGCCGACATTATCACCTAATCTTAATACCCTTGCCCTAGTTGAGGCTGCAGGTGTAAAGAAACTTCTATTCTGTGGTGTGGGTTGCCAGGTGCAAGCATTAAGGTCTGTGGAGCACCATCTGAATTTGGAGAAGCTGTATGTGTTGGGCACAAATTGCGTGGATAATGGGACTCGTGAAGGGCTTGATAAGTTTCTAAAGGCTGCTAGTAGTGAACCAGAGACGGTTCTTCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGTCATATTGAAGAGGTTCCTTATTTCTCCCTGCCAGCAAATGATTTAGTTGATGTAATTGCTCCTTCTTGTTATAGCTGCTTTGACTACACAAATGCTTTGGCGGATTTAGTGGTTGGATACATGGGTGTGCCAAAATATTCTGGAATCAGCATGACACAACATCCTCAGTATGTTACAGTAAGAAATGAACGTGGAAGAGAGATGCTCAGTCTGGTTGAAAAACATTTGGAGATTACTCCTACGACTAGTAGTGGTGATCGCAGACCATTTGTATTGGAGACGGTTAAGGCGGATGATACGGCTAAGATGGGGAGGGGTCCTGATCCTGCACCAAAGTTCGTTGGCAATTTGATTGCTTTCTTGCTAAACTTGGTTGGTCCCAAGGGGCTGGAGTTTGCTCGATATTCACTTGATTACCATACCATCCGGAACTATCTGCATGTTAACCGAACATGGGGAAAAGAAAGAGCTGGTCGACATATGCCTTCGTATGCAAAGAAAATTGTGGATAGTTACAACAAGAATGGTGAAATTGATAAGATGCTTTCGGCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Castor_Poll_mid

Protein Analysis

459

Amino Acids

50.66

Weight (kDa)

8.19

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FrhB_FdhB_N PF04422 117 - 191 4.4e-25 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
FrhB_FdhB_C PF04432 200 - 354 7.8e-27 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 1297
AccIII TCCGGA 1 cut(s) 1248
AciI CCGC 3 cut(s) 189, 923, 1112
AclWI GGATC 1 cut(s) 1139
AcoI YGGCCR 1 cut(s) 1371
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 5 cut(s) 152, 223, 377, 583, 1276
AgsI TTSAA 6 cut(s) 18, 266, 377, 808, 830, 1040
AhlI ACTAGT 1 cut(s) 1067
AjnI CCWGG 2 cut(s) 148, 627
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 7 cut(s) 109, 167, 446, 527, 676, 897, 1292
AluI AGCT 7 cut(s) 109, 167, 446, 527, 676, 897, 1292
Alw21I GWGCWC 2 cut(s) 385, 657
Alw26I GTCTC 3 cut(s) 118, 755, 1094
AlwI GGATC 1 cut(s) 1139
Aor13HI TCCGGA 1 cut(s) 1248
AoxI GGCC 2 cut(s) 491, 1371
ApeKI GCWGC 4 cut(s) 527, 587, 743, 897
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 2 cut(s) 519, 834
AspS9I GGNCC 2 cut(s) 1139, 1199
AsuHPI GGTGA 3 cut(s) 546, 1088, 1361
AvaII GGWCC 2 cut(s) 1139, 1199
BaeGI GKGCMC 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 931, 964
BarI GAAGNNNNNNTAC 2 cut(s) 588, 620
BauI CACGAG 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 385, 657
BbvI GCAGC 4 cut(s) 514, 574, 730, 884
BccI CCATC 6 cut(s) 44, 242, 666, 812, 1123, 1253
BceAI ACGGC 1 cut(s) 1137
BciT130I CCWGG 2 cut(s) 150, 629
BciVI GTATCC 1 cut(s) 932
BcoDI GTCTC 3 cut(s) 118, 755, 1094
BcuI ACTAGT 1 cut(s) 1067
BfaI CTAG 4 cut(s) 524, 578, 747, 1068
BfmI CTRYAG 3 cut(s) 178, 279, 588
BfuAI ACCTGC 1 cut(s) 581
BfuI GTATCC 1 cut(s) 932
BisI GCNGC 4 cut(s) 528, 588, 744, 898
BlsI GCNGC 4 cut(s) 529, 589, 745, 899
Bme1390I CCNGG 2 cut(s) 150, 629
Bme18I GGWCC 2 cut(s) 1139, 1199
BmgT120I GGNCC 2 cut(s) 1139, 1199
BmiI GGNNCC 4 cut(s) 276, 837, 1140, 1201
BmrFI CCNGG 2 cut(s) 150, 629
BmsI GCATC 2 cut(s) 1014, 1353
BplI GAGNNNNNCTC 2 cut(s) 1011, 1043
BpmI CTGGAG 2 cut(s) 142, 1232
BsaJI CCNNGG 2 cut(s) 488, 1203
BsaWI WCCGGW 2 cut(s) 511, 1248
BsaXI ACNNNNNCTCC 4 cut(s) 335, 365, 662, 692
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 223, 377, 583, 1276
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 210
BseAI TCCGGA 1 cut(s) 1248
BseBI CCWGG 2 cut(s) 150, 629
BseDI CCNNGG 2 cut(s) 488, 1203
BseGI GGATG 5 cut(s) 258, 823, 982, 1120, 1245
BseLI CCNNNNNNNGG 5 cut(s) 152, 223, 377, 583, 1276
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 398, 1001, 1042
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 4 cut(s) 514, 574, 730, 884
BseYI CCCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 1134
BshFI GGCC 2 cut(s) 493, 1373
BsiHKAI GWGCWC 2 cut(s) 385, 657
BsiSI CCGG 2 cut(s) 512, 1249
BslFI GGGAC 2 cut(s) 724, 1185
BslI CCNNNNNNNGG 5 cut(s) 152, 223, 377, 583, 1276
BsmAI GTCTC 3 cut(s) 118, 755, 1094
BsmBI CGTCTC 2 cut(s) 755, 1094
BsmFI GGGAC 2 cut(s) 724, 1185
BsnI GGCC 2 cut(s) 493, 1373
Bsp1286I GDGCHC 3 cut(s) 385, 657, 692
Bsp13I TCCGGA 1 cut(s) 1248
Bsp143I GATC 2 cut(s) 1078, 1144
BspACI CCGC 3 cut(s) 189, 923, 1112
BspANI GGCC 2 cut(s) 493, 1373
BspCNI CTCAG 3 cut(s) 397, 1000, 1041
BspEI TCCGGA 1 cut(s) 1248
BspLI GGNNCC 4 cut(s) 276, 837, 1140, 1201
BspMAI CTGCAG 2 cut(s) 182, 592
BspMI ACCTGC 1 cut(s) 581
BspPI GGATC 1 cut(s) 1139
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 488, 1203
BssMI GATC 2 cut(s) 1078, 1144
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 488, 1203
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 150, 629
Bst4CI ACNGT 3 cut(s) 766, 1000, 1105
Bst6I CTCTTC 2 cut(s) 825, 1012
BstAPI GCANNNNNTGC 2 cut(s) 186, 696
BstC8I GCNNGC 2 cut(s) 636, 855
BstDEI CTNAG 5 cut(s) 110, 384, 987, 1028, 1125
BstENI CCTNNNNNAGG 2 cut(s) 375, 581
BstF5I GGATG 5 cut(s) 258, 823, 982, 1120, 1245
BstKTI GATC 2 cut(s) 1081, 1147
BstMAI GTCTC 3 cut(s) 118, 755, 1094
BstMBI GATC 2 cut(s) 1078, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 186, 696
BstNI CCWGG 2 cut(s) 150, 629
BstNSI RCATGY 1 cut(s) 1265
BstSCI CCNGG 2 cut(s) 148, 627
BstSFI CTRYAG 3 cut(s) 178, 279, 588
BstSLI GKGCMC 1 cut(s) 692
BstV1I GCAGC 4 cut(s) 514, 574, 730, 884
BstXI CCANNNNNNTGG 1 cut(s) 1210
BsuI GTATCC 1 cut(s) 932
BsuRI GGCC 2 cut(s) 493, 1373
BtsCI GGATG 5 cut(s) 258, 823, 982, 1120, 1245
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 3 cut(s) 101, 175, 392
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 2 cut(s) 636, 855
Cfr13I GGNCC 2 cut(s) 1139, 1199
CspCI CAANNNNNGTGG 2 cut(s) 681, 716
CviAII CATG 7 cut(s) 218, 287, 436, 943, 973, 1262, 1275
DdeI CTNAG 5 cut(s) 110, 384, 987, 1028, 1125
DpnI GATC 2 cut(s) 1080, 1146
DpnII GATC 2 cut(s) 1078, 1144
EaeI YGGCCR 1 cut(s) 1371
Eam1104I CTCTTC 2 cut(s) 825, 1012
EarI CTCTTC 2 cut(s) 825, 1012
EciI GGCGGA 2 cut(s) 938, 1127
Eco130I CCWWGG 2 cut(s) 488, 1203
Eco147I AGGCCT 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 1139, 1199
Eco57I CTGAAG 1 cut(s) 125
EcoNI CCTNNNNNAGG 2 cut(s) 375, 581
EcoO109I RGGNCCY 1 cut(s) 1139
EcoRII CCWGG 2 cut(s) 148, 627
EcoT14I CCWWGG 2 cut(s) 488, 1203
ErhI CCWWGG 2 cut(s) 488, 1203
Esp3I CGTCTC 2 cut(s) 755, 1094
FaeI CATG 7 cut(s) 221, 290, 439, 946, 976, 1265, 1278
FalI AAGNNNNNCTT 2 cut(s) 788, 820
FaqI GGGAC 2 cut(s) 724, 1185
FatI CATG 7 cut(s) 217, 286, 435, 942, 972, 1261, 1274
FauI CCCGC 1 cut(s) 182
FauNDI CATATG 2 cut(s) 452, 1302
FblI GTMKAC 1 cut(s) 1297
Fnu4HI GCNGC 4 cut(s) 528, 588, 744, 898
FokI GGATG 5 cut(s) 265, 830, 969, 1127, 1232
Fsp4HI GCNGC 4 cut(s) 528, 588, 744, 898
FspBI CTAG 4 cut(s) 524, 578, 747, 1068
GluI GCNGC 4 cut(s) 528, 588, 744, 898
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 2 cut(s) 142, 1232
HaeIII GGCC 2 cut(s) 493, 1373
HapII CCGG 2 cut(s) 512, 1249
Hin1II CATG 7 cut(s) 221, 290, 439, 946, 976, 1265, 1278
HincII GTYRAC 2 cut(s) 1267, 1298
HindII GTYRAC 2 cut(s) 1267, 1298
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 308, 712, 966
HpaI GTTAAC 1 cut(s) 1267
HpaII CCGG 2 cut(s) 512, 1249
HphI GGTGA 3 cut(s) 546, 1088, 1361
Hpy166II GTNNAC 6 cut(s) 86, 390, 755, 802, 1267, 1298
Hpy188I TCNGA 2 cut(s) 462, 663
Hpy188III TCNNGA 4 cut(s) 716, 963, 1142, 1249
Hpy8I GTNNAC 6 cut(s) 86, 390, 755, 802, 1267, 1298
HpyAV CCTTC 5 cut(s) 260, 371, 713, 894, 1317
HpyCH4III ACNGT 3 cut(s) 766, 1000, 1105
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 9 cut(s) 180, 325, 413, 590, 634, 787, 1151, 1261, 1316
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 696
HpyF3I CTNAG 5 cut(s) 110, 384, 987, 1028, 1125
HpySE526I ACGT 1 cut(s) 1012
Hsp92II CATG 7 cut(s) 221, 290, 439, 946, 976, 1265, 1278
Kpn2I TCCGGA 1 cut(s) 1248
KspAI GTTAAC 1 cut(s) 1267
Kzo9I GATC 2 cut(s) 1078, 1144
LmnI GCTCC 3 cut(s) 137, 652, 886
Lsp1109I GCAGC 4 cut(s) 514, 574, 730, 884
LweI GCATC 2 cut(s) 1014, 1353
MaeI CTAG 4 cut(s) 524, 578, 747, 1068
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 6 cut(s) 99, 197, 400, 464, 994, 1334
MalI GATC 2 cut(s) 1080, 1146
MboI GATC 2 cut(s) 1078, 1144
MboII GAAGA 8 cut(s) 6, 42, 48, 54, 527, 761, 842, 1029
MhlI GDGCHC 3 cut(s) 385, 657, 692
MluCI AATT 7 cut(s) 18, 664, 694, 876, 1168, 1323, 1353
MlyI GAGTC 2 cut(s) 302, 706
MmeI TCCRAC 1 cut(s) 916
MroI TCCGGA 1 cut(s) 1248
MroXI GAANNNNTTC 2 cut(s) 519, 834
MseI TTAA 4 cut(s) 564, 641, 1107, 1266
MslI CAYNNNNRTG 3 cut(s) 330, 816, 947
MspI CCGG 2 cut(s) 512, 1249
MspR9I CCNGG 2 cut(s) 150, 629
MvaI CCWGG 2 cut(s) 150, 629
MwoI GCNNNNNNNGC 2 cut(s) 186, 696
NdeI CATATG 2 cut(s) 452, 1302
NdeII GATC 2 cut(s) 1078, 1144
NlaIII CATG 7 cut(s) 221, 290, 439, 946, 976, 1265, 1278
NlaIV GGNNCC 4 cut(s) 276, 837, 1140, 1201
NmuCI GTSAC 3 cut(s) 99, 197, 464
NspI RCATGY 1 cut(s) 1265
OliI CACNNNNGTG 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 581
PceI AGGCCT 1 cut(s) 493
PdmI GAANNNNTTC 2 cut(s) 519, 834
PfeI GAWTC 1 cut(s) 966
PkrI GCNGC 4 cut(s) 529, 589, 745, 899
PleI GAGTC 2 cut(s) 302, 706
PpsI GAGTC 2 cut(s) 302, 706
PpuMI RGGWCCY 1 cut(s) 1139
Psp5II RGGWCCY 1 cut(s) 1139
Psp6I CCWGG 2 cut(s) 148, 627
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 2 cut(s) 148, 627
PspN4I GGNNCC 4 cut(s) 276, 837, 1140, 1201
PspPI GGNCC 2 cut(s) 1139, 1199
PspPPI RGGWCCY 1 cut(s) 1139
PstI CTGCAG 2 cut(s) 182, 592
RseI CAYNNNNRTG 3 cut(s) 330, 816, 947
SalI GTCGAC 1 cut(s) 1296
SaqAI TTAA 4 cut(s) 564, 641, 1107, 1266
SatI GCNGC 4 cut(s) 528, 588, 744, 898
Sau3AI GATC 2 cut(s) 1078, 1144
Sau96I GGNCC 2 cut(s) 1139, 1199
SchI GAGTC 2 cut(s) 302, 706
ScrFI CCNGG 2 cut(s) 150, 629
SduI GDGCHC 3 cut(s) 385, 657, 692
SfaNI GCATC 2 cut(s) 1014, 1353
SfcI CTRYAG 3 cut(s) 178, 279, 588
SinI GGWCC 2 cut(s) 1139, 1199
SmiMI CAYNNNNRTG 3 cut(s) 330, 816, 947
SpeI ACTAGT 1 cut(s) 1067
Sse9I AATT 7 cut(s) 18, 664, 694, 876, 1168, 1323, 1353
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 3 cut(s) 189, 923, 1112
SspI AATATT 1 cut(s) 959
SspMI CTAG 4 cut(s) 524, 578, 747, 1068
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 148, 627
StyI CCWWGG 2 cut(s) 488, 1203
TaaI ACNGT 3 cut(s) 766, 1000, 1105
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 2 cut(s) 1222, 1297
TasI AATT 7 cut(s) 18, 664, 694, 876, 1168, 1323, 1353
TfiI GAWTC 1 cut(s) 966
Tru1I TTAA 4 cut(s) 564, 641, 1107, 1266
Tru9I TTAA 4 cut(s) 564, 641, 1107, 1266
TscAI CASTG 3 cut(s) 108, 182, 392
TseFI GTSAC 3 cut(s) 99, 197, 464
TseI GCWGC 4 cut(s) 527, 587, 743, 897
Tsp45I GTSAC 3 cut(s) 99, 197, 464
TspDTI ATGAA 7 cut(s) 42, 48, 54, 275, 333, 761, 1023
TspRI CASTG 3 cut(s) 108, 182, 392
VpaK11BI GGWCC 2 cut(s) 1139, 1199
XagI CCTNNNNNAGG 2 cut(s) 375, 581
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 1265
XmiI GTMKAC 1 cut(s) 1297
XmnI GAANNNNTTC 2 cut(s) 519, 834
XspI CTAG 4 cut(s) 524, 578, 747, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.