RLG00000010392

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000090
Physical Location & Seq
Forward (+)
1287279 .. 1290921
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010392

Sequence Viewer

Length: 1668 bp
ATGCTTAGTCACAAGGATTTAGAACGTAGTAGTTCTCTTAATGTCGATTTCATTGATGATGATCCCCAAGATGAAGAAATATTGTCCGCGGATGAGGAATACACCGAGAATAATGATGATGATGAAGATAGTGATCTAGATTGGATGTTTAAAGCAACTCTGAACAAGACCAAGGAAAACAATAAGCGTGCGTACCAGCTATCAATGCGTCCTCTATCATCCCCTCAACCTCAACCAACCATACAACAGTCATTGCTCACTCGAACTAGGGAGAACCGGTCTGCAGGTGAAGTTGGTCGTTCTGTTCCTGTTTCATCTCAAGGACATTTGAAGAAAACTTATGGCAATATTTTACGGTTAGGAACTCATGCTGCAACCAATGCCACAAAGAAGAGAAATCAAATTCCAATGGATGATGAGCAATCCAATCTAAATGAGAACTGTCATGAACCTGTCAAGAAGGCGCGTGGCATTACAAAGAATAAGTTGGGAACTCCTGCTGTGATCAATCCAAAACTGAAGAGAGTTCAAATCCCAATGGACAATGAGGACTGTATTCCAAATGAGAATTTTGACCCTCTTTTAGATCCAGAACCTGTAAAGAAGACCCGTGGCATTACAGTAGGGTTGAAAGCTCATGCTATTGTTAGTGCGACCAAAAAGAGAATTCCAATCAAGATGGACAAGGATCAAAAGCTCCCTGAGACTGTTCAAGCTAATGCTATGTTTGTTAACGAGATTGGGTCATTCACGCGCAAATTAGCACCACTCAAATTCAAATGGTGGAGAAAAGTACCTAAGGATGCCAAGAATGACATCAAAGAGGCTCTGACAACTAATTTTGAGTTTGATTGGACTGACCCGGAGCTGAGGATATTTGTGGAGAAAAAGATGGCCAAGGCATTTGGATCTTGGAGATCCAAGTTGCATGGACATTTTAAAAAGTATGCTCATGATTTAGAATATGCTCGAGCACACCCACCCGGAGAAAAGCTCTTTGGTGAAAGATCAATAGATGAAAGGGAGTGGCTTTGTGACGAGCTGTTCATAGATGAAACCTATGTGAAACGAAGTCACGTTAATGCTACAAATCGAAATCAGAAAGAGTATAATCACTGTGGAGGTTCACGGCCTTACCAAAAACATATGGAAGCTGCACTTAAGAACGGTAAAAATGTGTCTTTTGTTGAGAATTGGAGCACTATGCATCAACATCGTGACGGTCAGTGGATCAACGAAGCAGCTGAACAAACTGGGAAGAAAATGTTAGCAGAATTGAATCAGATAAAGGAGAAGTTAGCTGAAGTCCTTGGGGCTGCCTCACTTGATGAAATAGAAGTTCCCGTCTCTATGCAGTTGGATATCTTGGCAAATGGTGTTGGGGTTGCAAAGGGTAGAGGCATTCGCGGTCTGGGTTATGGTCCACGGAAGGAACCCGTCCATTATTCTGAGAGTGATAAATCTGCAAATGCTTCCGTGACAGAACAAAAGGTGATTGAGCTGACAGCCACAGTGGAAAAGCTTTTGAGGCATATCAATCACATAGAAGAGCAACTTGCTACTGTTGAAGGGTATACTATTCATCATTCCAGTGATGATAATGATTATGATGATGGGGATGATGATGATGTGAATATCTATGGGGATGAAGATGAGGGTGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

556

Amino Acids

63.0

Weight (kDa)

5.76

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 352 - 475 1.8e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 1574
AccII CGCG 4 cut(s) 89, 466, 754, 1407
AciI CCGC 3 cut(s) 87, 89, 1407
AclWI GGATC 6 cut(s) 56, 581, 696, 912, 916, 1238
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 4 cut(s) 402, 568, 666, 773
AcuI CTGAAG 2 cut(s) 539, 1323
AfaI GTAC 2 cut(s) 194, 795
AflII CTTAAG 1 cut(s) 1160
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 7 cut(s) 331, 530, 631, 713, 778, 1279, 1568
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
Alw21I GWGCWC 2 cut(s) 976, 1202
Alw26I GTCTC 2 cut(s) 698, 1351
AlwI GGATC 6 cut(s) 56, 581, 696, 912, 916, 1238
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 969
AoxI GGCC 2 cut(s) 894, 1130
ApeKI GCWGC 4 cut(s) 371, 1154, 1241, 1316
ApoI RAATTY 4 cut(s) 402, 568, 666, 773
AsiGI ACCGGT 1 cut(s) 276
AspLEI GCGC 2 cut(s) 466, 756
AspS9I GGNCC 1 cut(s) 1421
AsuC2I CCSGG 2 cut(s) 863, 984
AsuHPI GGTGA 3 cut(s) 299, 1013, 1504
AvaI CYCGRG 1 cut(s) 969
AvaII GGWCC 1 cut(s) 1421
AxyI CCTNAGG 1 cut(s) 798
BalI TGGCCA 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 2 cut(s) 976, 1202
BbvCI CCTCAGC 1 cut(s) 869
BbvI GCAGC 4 cut(s) 358, 1141, 1253, 1303
BccI CCATC 3 cut(s) 673, 886, 1607
BceAI ACGGC 1 cut(s) 1145
BcgI CGANNNNNNTGC 2 cut(s) 1196, 1230
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 2 cut(s) 863, 984
BcoDI GTCTC 2 cut(s) 698, 1351
BfaI CTAG 3 cut(s) 137, 267, 1666
BfmI CTRYAG 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 1160
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 4 cut(s) 372, 1155, 1242, 1317
BlsI GCNGC 4 cut(s) 373, 1156, 1243, 1318
Bme1390I CCNGG 2 cut(s) 863, 984
Bme18I GGWCC 1 cut(s) 1421
BmeT110I CYCGRG 1 cut(s) 969
BmgT120I GGNCC 1 cut(s) 1421
BmiI GGNNCC 1 cut(s) 1434
BmrFI CCNGG 2 cut(s) 863, 984
BmrI ACTGGG 1 cut(s) 1263
BmsI GCATC 2 cut(s) 793, 1216
BmuI ACTGGG 1 cut(s) 1263
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 978, 1010
Bpu10I CCTNAGC 1 cut(s) 869
BpuEI CTTGAG 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 863, 984
BsaBI GATNNNNATC 2 cut(s) 60, 132
BsaJI CCNNGG 6 cut(s) 87, 171, 610, 897, 1309, 1424
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 2 cut(s) 1258, 1590
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 2 cut(s) 60, 132
BseDI CCNNGG 6 cut(s) 87, 171, 610, 897, 1309, 1424
BseGI GGATG 7 cut(s) 97, 150, 218, 418, 808, 1624, 1651
BseJI GATNNNNATC 2 cut(s) 60, 132
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 3 cut(s) 693, 860, 1440
BseNI ACTGG 2 cut(s) 1258, 1590
BseXI GCAGC 4 cut(s) 358, 1141, 1253, 1303
BsgI GTGCAG 1 cut(s) 1140
Bsh1236I CGCG 4 cut(s) 89, 466, 754, 1407
BshFI GGCC 2 cut(s) 896, 1132
BshTI ACCGGT 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 976, 1202
BsiHKCI CYCGRG 1 cut(s) 969
BsiSI CCGG 3 cut(s) 277, 863, 984
BsmAI GTCTC 2 cut(s) 698, 1351
BsmBI CGTCTC 1 cut(s) 1351
BsmI GAATGC 1 cut(s) 1401
BsnI GGCC 2 cut(s) 896, 1132
BsoBI CYCGRG 1 cut(s) 969
Bsp1286I GDGCHC 2 cut(s) 976, 1202
Bsp143I GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
BspACI CCGC 3 cut(s) 87, 89, 1407
BspANI GGCC 2 cut(s) 896, 1132
BspCNI CTCAG 3 cut(s) 694, 861, 1441
BspFNI CGCG 4 cut(s) 89, 466, 754, 1407
BspHI TCATGA 2 cut(s) 445, 952
BspLI GGNNCC 1 cut(s) 1434
BspMAI CTGCAG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 6 cut(s) 56, 581, 696, 912, 916, 1238
BspQI GCTCTTC 1 cut(s) 1542
BspTI CTTAAG 1 cut(s) 1160
BsrDI GCAATG 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 2 cut(s) 1258, 1590
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 6 cut(s) 87, 171, 610, 897, 1309, 1424
BssMI GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
BssNAI GTATAC 1 cut(s) 1575
BssT1I CCWWGG 3 cut(s) 171, 897, 1309
Bst1107I GTATAC 1 cut(s) 1575
Bst6I CTCTTC 3 cut(s) 386, 515, 1542
BstAFI CTTAAG 1 cut(s) 1160
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 5 cut(s) 5, 702, 798, 869, 1449
BstDSI CCRYGG 3 cut(s) 87, 610, 1424
BstF5I GGATG 7 cut(s) 97, 150, 218, 418, 808, 1624, 1651
BstFNI CGCG 4 cut(s) 89, 466, 754, 1407
BstHHI GCGC 2 cut(s) 466, 756
BstKTI GATC 9 cut(s) 64, 136, 507, 589, 691, 911, 920, 1010, 1233
BstMAI GTCTC 2 cut(s) 698, 1351
BstMBI GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
BstMWI GCNNNNNNNGC 3 cut(s) 205, 380, 1528
BstSCI CCNGG 2 cut(s) 861, 982
BstSFI CTRYAG 1 cut(s) 282
BstUI CGCG 4 cut(s) 89, 466, 754, 1407
BstV1I GCAGC 4 cut(s) 358, 1141, 1253, 1303
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 3 cut(s) 586, 908, 917
BstYI RGATCY 3 cut(s) 586, 908, 917
BstZ17I GTATAC 1 cut(s) 1575
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 2 cut(s) 896, 1132
BtgI CCRYGG 3 cut(s) 87, 610, 1424
BtsCI GGATG 7 cut(s) 97, 150, 218, 418, 808, 1624, 1651
BtsIMutI CAGTG 4 cut(s) 1114, 1232, 1518, 1597
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 2 cut(s) 445, 952
CfoI GCGC 2 cut(s) 466, 756
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 1421
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 193, 794
CspAI ACCGGT 1 cut(s) 276
CviAII CATG 5 cut(s) 368, 446, 638, 929, 953
CviQI GTAC 2 cut(s) 193, 794
DdeI CTNAG 5 cut(s) 5, 702, 798, 869, 1449
DpnI GATC 9 cut(s) 63, 135, 506, 588, 690, 910, 919, 1009, 1232
DpnII GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
DraI TTTAAA 2 cut(s) 151, 940
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 3 cut(s) 386, 515, 1542
EarI CTCTTC 3 cut(s) 386, 515, 1542
Eco130I CCWWGG 3 cut(s) 171, 897, 1309
Eco32I GATATC 1 cut(s) 1363
Eco47I GGWCC 1 cut(s) 1421
Eco57I CTGAAG 2 cut(s) 539, 1323
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 969
EcoRI GAATTC 1 cut(s) 666
EcoRV GATATC 1 cut(s) 1363
EcoT14I CCWWGG 3 cut(s) 171, 897, 1309
EcoT22I ATGCAT 1 cut(s) 1209
ErhI CCWWGG 3 cut(s) 171, 897, 1309
Esp3I CGTCTC 1 cut(s) 1351
FaeI CATG 5 cut(s) 371, 449, 641, 932, 956
FalI AAGNNNNNCTT 4 cut(s) 1143, 1175, 1539, 1571
FatI CATG 5 cut(s) 367, 445, 637, 928, 952
FauNDI CATATG 1 cut(s) 1146
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 1574
Fnu4HI GCNGC 4 cut(s) 372, 1155, 1242, 1317
FokI GGATG 7 cut(s) 104, 157, 205, 425, 815, 1631, 1658
Fsp4HI GCNGC 4 cut(s) 372, 1155, 1242, 1317
FspBI CTAG 3 cut(s) 137, 267, 1666
GlaI GCGC 2 cut(s) 465, 755
GluI GCNGC 4 cut(s) 372, 1155, 1242, 1317
HaeIII GGCC 2 cut(s) 896, 1132
HapII CCGG 3 cut(s) 277, 863, 984
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 466, 756
Hin1II CATG 5 cut(s) 371, 449, 641, 932, 956
Hin6I GCGC 2 cut(s) 464, 754
HinP1I GCGC 2 cut(s) 464, 754
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 1520
HinfI GANTC 1 cut(s) 1279
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 3 cut(s) 277, 863, 984
HphI GGTGA 3 cut(s) 299, 1013, 1504
Hpy166II GTNNAC 4 cut(s) 733, 1127, 1424, 1575
Hpy188I TCNGA 5 cut(s) 162, 831, 1101, 1284, 1450
Hpy188III TCNNGA 7 cut(s) 137, 446, 457, 590, 676, 953, 1217
Hpy8I GTNNAC 4 cut(s) 733, 1127, 1424, 1575
HpyAV CCTTC 3 cut(s) 454, 1423, 1562
HpyCH4IV ACGT 2 cut(s) 25, 1077
HpyCH4V TGCA 9 cut(s) 284, 374, 928, 1157, 1207, 1354, 1388, 1466, 1661
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 380, 1528
HpyF3I CTNAG 5 cut(s) 5, 702, 798, 869, 1449
HpySE526I ACGT 2 cut(s) 25, 1077
Hsp92II CATG 5 cut(s) 371, 449, 641, 932, 956
HspAI GCGC 2 cut(s) 464, 754
Ksp22I TGATCA 1 cut(s) 504
KspAI GTTAAC 1 cut(s) 733
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
LguI GCTCTTC 1 cut(s) 1542
LmnI GCTCC 3 cut(s) 702, 865, 1197
Lsp1109I GCAGC 4 cut(s) 358, 1141, 1253, 1303
LweI GCATC 2 cut(s) 793, 1216
MaeI CTAG 3 cut(s) 137, 267, 1666
MaeII ACGT 2 cut(s) 25, 1077
MaeIII GTNAC 5 cut(s) 8, 1034, 1073, 1217, 1477
MalI GATC 9 cut(s) 63, 135, 506, 588, 690, 910, 919, 1009, 1232
MboI GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
MboII GAAGA 9 cut(s) 86, 137, 343, 403, 532, 616, 1270, 1559, 1661
MflI RGATCY 3 cut(s) 586, 908, 917
MhlI GDGCHC 2 cut(s) 976, 1202
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 8 cut(s) 402, 568, 666, 758, 773, 838, 1192, 1274
MluNI TGGCCA 1 cut(s) 896
MmeI TCCRAC 1 cut(s) 1338
Mox20I TGGCCA 1 cut(s) 896
Mph1103I ATGCAT 1 cut(s) 1209
MscI TGGCCA 1 cut(s) 896
MseI TTAA 6 cut(s) 39, 150, 732, 939, 1080, 1161
MslI CAYNNNNRTG 2 cut(s) 1080, 1590
Msp20I TGGCCA 1 cut(s) 896
MspA1I CMGCKG 2 cut(s) 89, 1244
MspCI CTTAAG 1 cut(s) 1160
MspI CCGG 3 cut(s) 277, 863, 984
MspR9I CCNGG 2 cut(s) 863, 984
Mva1269I GAATGC 1 cut(s) 1401
MvnI CGCG 4 cut(s) 89, 466, 754, 1407
MwoI GCNNNNNNNGC 3 cut(s) 205, 380, 1528
NciI CCSGG 2 cut(s) 863, 984
NdeI CATATG 1 cut(s) 1146
NdeII GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
NlaIII CATG 5 cut(s) 371, 449, 641, 932, 956
NlaIV GGNNCC 1 cut(s) 1434
NmuCI GTSAC 5 cut(s) 8, 1034, 1073, 1217, 1477
NsiI ATGCAT 1 cut(s) 1209
PaeR7I CTCGAG 1 cut(s) 969
PagI TCATGA 2 cut(s) 445, 952
PaqCI CACCTGC 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 1542
PctI GAATGC 1 cut(s) 1401
PfeI GAWTC 1 cut(s) 1279
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 4 cut(s) 373, 1156, 1243, 1318
PspN4I GGNNCC 1 cut(s) 1434
PspPI GGNCC 1 cut(s) 1421
PspXI VCTCGAGB 1 cut(s) 969
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 3 cut(s) 586, 908, 917
PvuII CAGCTG 1 cut(s) 1244
RsaI GTAC 2 cut(s) 194, 795
RsaNI GTAC 2 cut(s) 193, 794
RseI CAYNNNNRTG 2 cut(s) 1080, 1590
SacII CCGCGG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 1542
SaqAI TTAA 6 cut(s) 39, 150, 732, 939, 1080, 1161
SatI GCNGC 4 cut(s) 372, 1155, 1242, 1317
Sau3AI GATC 9 cut(s) 61, 133, 504, 586, 688, 908, 917, 1007, 1230
Sau96I GGNCC 1 cut(s) 1421
ScrFI CCNGG 2 cut(s) 863, 984
SduI GDGCHC 2 cut(s) 976, 1202
SfaNI GCATC 2 cut(s) 793, 1216
SfcI CTRYAG 1 cut(s) 282
Sfr274I CTCGAG 1 cut(s) 969
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
SinI GGWCC 1 cut(s) 1421
SlaI CTCGAG 1 cut(s) 969
SmiMI CAYNNNNRTG 2 cut(s) 1080, 1590
SmlI CTYRAG 3 cut(s) 318, 969, 1160
SmoI CTYRAG 3 cut(s) 318, 969, 1160
Sse9I AATT 8 cut(s) 402, 568, 666, 758, 773, 838, 1192, 1274
SsiI CCGC 3 cut(s) 87, 89, 1407
SspI AATATT 2 cut(s) 81, 349
SspMI CTAG 3 cut(s) 137, 267, 1666
StyD4I CCNGG 2 cut(s) 861, 982
StyI CCWWGG 3 cut(s) 171, 897, 1309
TaiI ACGT 2 cut(s) 28, 1080
TaqI TCGA 4 cut(s) 45, 262, 970, 1093
TasI AATT 8 cut(s) 402, 568, 666, 758, 773, 838, 1192, 1274
TfiI GAWTC 1 cut(s) 1279
Tru1I TTAA 6 cut(s) 39, 150, 732, 939, 1080, 1161
Tru9I TTAA 6 cut(s) 39, 150, 732, 939, 1080, 1161
TscAI CASTG 4 cut(s) 1121, 1232, 1518, 1597
TseFI GTSAC 5 cut(s) 8, 1034, 1073, 1217, 1477
TseI GCWGC 4 cut(s) 371, 1154, 1241, 1316
Tsp45I GTSAC 5 cut(s) 8, 1034, 1073, 1217, 1477
TspGWI ACGGA 2 cut(s) 1441, 1465
TspRI CASTG 4 cut(s) 1121, 1232, 1518, 1597
Vha464I CTTAAG 1 cut(s) 1160
VpaK11BI GGWCC 1 cut(s) 1421
XapI RAATTY 4 cut(s) 402, 568, 666, 773
XbaI TCTAGA 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 969
XmiI GTMKAC 1 cut(s) 1574
XspI CTAG 3 cut(s) 137, 267, 1666
Zsp2I ATGCAT 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.