Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000090

Physical Location & Seq

Genomic Coordinates Reverse (-)

34784047 .. 34784791

Gene Structure 745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG194300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGTGACACTGACAAAAATGAGCAGCTTGATAATCTCATTTATTCTAGAGACGCTAATCCTATGGCTGATTTCGAAAGACCTGATGATGCTCATGAAGATCTAGGAGGATTAAGCAAAAATGGATATAATATCCCCAATGGAGCTATGTCTGGAGCTTCAGGTGAGAATGAGCCATATCTGGAGCTAGTTGATCTTGACAAACCTTTGAATGGCAATAATTCTCTGTTTCCAATGATTAGTCCACCTCGTACTTTTCTTGGAGAGACACCATATGAAGACTCGTTCTTTTCATGGAGTGATGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

103

Amino Acids

11.45

Weight (kDa)

4.05

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000090)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica	MD09G1277700.v1.1
pyrus_communis	pycom14g05970 pycom395g00100
rosa_chinensis	RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata	RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora	Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii	Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa	Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha	Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana	Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	4 cut(s)	28, 146, 158, 187
AluI	AGCT	4 cut(s)	28, 146, 158, 187
Alw26I	GTCTC	2 cut(s)	45, 260
ApeKI	GCWGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	45, 260
BfaI	CTAG	3 cut(s)	48, 104, 188
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	2 cut(s)	174, 203
Bpu14I	TTCGAA	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	45, 260
BsmBI	CGTCTC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	100, 193
BspHI	TCATGA	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	75
BssMI	GATC	2 cut(s)	100, 193
BstBI	TTCGAA	1 cut(s)	75
BstKTI	GATC	2 cut(s)	103, 196
BstMAI	GTCTC	2 cut(s)	45, 260
BstMBI	GATC	2 cut(s)	100, 193
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	9
CciI	TCATGA	1 cut(s)	94
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	95, 294
CviJI	RGCY	6 cut(s)	28, 68, 146, 158, 175, 187
CviKI_1	RGCY	6 cut(s)	28, 68, 146, 158, 175, 187
CviQI	GTAC	1 cut(s)	252
DpnI	GATC	2 cut(s)	102, 195
DpnII	GATC	2 cut(s)	100, 193
Eco57I	CTGAAG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	98, 297
FaiI	YATR	9 cut(s)	65, 96, 129, 149, 178, 274, 276, 295, 310
FatI	CATG	2 cut(s)	94, 293
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	3 cut(s)	48, 104, 188
GluI	GCNGC	1 cut(s)	26
GsuI	CTGGAG	2 cut(s)	174, 203
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	98, 297
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188III	TCNNGA	5 cut(s)	48, 95, 153, 182, 197
Hpy8I	GTNNAC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	98, 297
Kzo9I	GATC	2 cut(s)	100, 193
LmnI	GCTCC	3 cut(s)	143, 155, 184
LpnPI	CCDG	4 cut(s)	96, 138, 147, 167
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	3 cut(s)	48, 104, 188
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	102, 195
MboI	GATC	2 cut(s)	100, 193
MboII	GAAGA	2 cut(s)	110, 290
MflI	RGATCY	1 cut(s)	100
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	2 cut(s)	101, 258
MseI	TTAA	1 cut(s)	113
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	100, 193
NlaIII	CATG	2 cut(s)	98, 297
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	1 cut(s)	75
PagI	TCATGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	100, 193
SchI	GAGTC	1 cut(s)	275
SetI	ASST	8 cut(s)	30, 85, 148, 160, 166, 189, 208, 250
SfaNI	GCATC	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	75
Sse9I	AATT	1 cut(s)	220
SspMI	CTAG	3 cut(s)	48, 104, 188
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	111, 282, 291
TspRI	CASTG	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	47
XspI	CTAG	3 cut(s)	48, 104, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.