RchiOBHm_Chr1g0329081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000090
Physical Location & Seq
Forward (+)
18607933 .. 18619592
11660 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55843

Sequence Viewer

Length: 1035 bp
ATGTCAGCAAATGGAGGGAATAAATTGATTGTGGTTTGGGATCCAGATCATTGGGTTCCTAGTGATAAGACAGTTAGTAAAAAGTTCACTTCTGAAATTGGAATTACTATTCGAGGTTATGCTCCAGTATGTTATGGAGGGTGGTCTAAGATAAAGCCTGATACTAAGAGGAAATTGAGGGAGAAGTTGGAGACCCTTTTTGAGGTTGATCTCCATCATCCAAAAGTTCTTGCATATGTTGATGGAATAATGGCTACAGCATACACTCAGTTTAAATGGAGATTGCATAATCACTACAAGGAGAATGGAACATATGAACGGGCACGAGCCAAGTTACCTGACCCAGACCTTTGGAATAGTAGACCTCTAGAGCATTGGCATTGGTTGTGCGATAATCTTTATAGCAATGAGGGATATATGGAGGTCTGTGCTACTAATGCTCAAAACCGAGATAAACAGGAAAGTACCCATCGGGGTGGTGCAATGCCATTTATTCAGCATGCTTTGCAAGCAGCAAAGGAAGCTGGTCAGCCTGTATCATTTATAAACAATTATGAAAACATGTATCAGGATGCAGAGCATAAGTGGGTTAGTGAAGCTAAACGAGTGAGACATGAGAAAATGAAGCAGAAGAGGGAAGATATCAAGGCAAAGCTCATTGAAGAGGCACCAGAAGGTACTCCTATTGAATCAATAGAAGTGGCTTTGAATGACGAGATTGCAATTATGGTTGAGGAGTGTGGGAGAAAAGGTGGCAAGGTTCAAGGTTTAGGTGCTTTCCCTCGCTTGGATATCTCGTCTTCTTCTTCTTCAATGCCAATAAATTCTGAGTGGAATGAGATGAAAGGTAATCTACAAAAGCTTACATCCACTGTAAGTTGCTTGGAATCTGAGAATGCAAAGTTGAAATCTATGTTGAGAGCAATATTTAGCAAATTGAATGGGAGTGATGACATTAATTGTGATGCTGATGATAGCTCTGCTCAAGAAACTGATGGTATTGAAGGAATTGATCATGACTTCTCTAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

344

Amino Acids

38.96

Weight (kDa)

5.79

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 124 - 261 4.1e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 361
AclWI GGATC 2 cut(s) 35, 48
AcsI RAATTY 1 cut(s) 823
AfaI GTAC 2 cut(s) 466, 679
AfiI CCNNNNNNNGG 2 cut(s) 202, 787
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 8 cut(s) 662, 689, 709, 764, 813, 907, 940, 1004
AluBI AGCT 5 cut(s) 524, 599, 655, 862, 978
AluI AGCT 5 cut(s) 524, 599, 655, 862, 978
Alw26I GTCTC 2 cut(s) 185, 604
AlwI GGATC 2 cut(s) 35, 48
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 823
AseI ATTAAT 1 cut(s) 957
BaeGI GKGCMC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 667
BauI CACGAG 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 792
BbvI GCAGC 1 cut(s) 524
BccI CCATC 4 cut(s) 222, 236, 477, 989
BclI TGATCA 1 cut(s) 1012
BcoDI GTCTC 2 cut(s) 185, 604
BfaI CTAG 3 cut(s) 60, 368, 1033
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
BmiI GGNNCC 3 cut(s) 42, 57, 669
BmsI GCATC 2 cut(s) 562, 955
BpiI GAAGAC 1 cut(s) 792
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 969
BsaBI GATNNNNATC 2 cut(s) 45, 213
BsaI GGTCTC 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 787
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 412, 489
Bse8I GATNNNNATC 2 cut(s) 45, 213
BseGI GGATG 3 cut(s) 217, 577, 866
BseJI GATNNNNATC 2 cut(s) 45, 213
BseLI CCNNNNNNNGG 2 cut(s) 202, 787
BseMI GCAATG 2 cut(s) 412, 489
BseMII CTCAG 3 cut(s) 281, 819, 882
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 749
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 1 cut(s) 524
BshNI GGYRCC 1 cut(s) 667
BslI CCNNNNNNNGG 2 cut(s) 202, 787
BsmAI GTCTC 2 cut(s) 185, 604
BsmI GAATGC 1 cut(s) 901
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 4 cut(s) 40, 46, 208, 1012
BspCNI CTCAG 3 cut(s) 280, 820, 883
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 3 cut(s) 42, 57, 669
BspPI GGATC 2 cut(s) 35, 48
BspT107I GGYRCC 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 412, 489
BsrI ACTGG 1 cut(s) 125
BssMI GATC 4 cut(s) 40, 46, 208, 1012
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 73, 874
Bst6I CTCTTC 2 cut(s) 626, 657
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 501, 510
BstDEI CTNAG 5 cut(s) 147, 165, 267, 828, 891
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 217, 577, 866
BstKTI GATC 4 cut(s) 43, 49, 211, 1015
BstMAI GTCTC 2 cut(s) 185, 604
BstMBI GATC 4 cut(s) 40, 46, 208, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 437, 505, 509, 521
BstNSI RCATGY 2 cut(s) 503, 565
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 3 cut(s) 51, 351, 476
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 3 cut(s) 217, 577, 866
BtsIMutI CAGTG 1 cut(s) 870
Cac8I GCNNGC 2 cut(s) 501, 510
CciI TCATGA 1 cut(s) 1015
Csp6I GTAC 2 cut(s) 465, 678
CspCI CAANNNNNGTGG 2 cut(s) 681, 716
CviAII CATG 4 cut(s) 500, 562, 614, 1016
CviQI GTAC 2 cut(s) 465, 678
DdeI CTNAG 5 cut(s) 147, 165, 267, 828, 891
DpnI GATC 4 cut(s) 42, 48, 210, 1014
DpnII GATC 4 cut(s) 40, 46, 208, 1012
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 626, 657
EarI CTCTTC 2 cut(s) 626, 657
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 2 cut(s) 643, 793
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoRV GATATC 2 cut(s) 643, 793
FaeI CATG 4 cut(s) 503, 565, 617, 1019
FatI CATG 4 cut(s) 499, 561, 613, 1015
FauNDI CATATG 2 cut(s) 235, 313
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 3 cut(s) 204, 584, 853
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 3 cut(s) 60, 368, 1033
GluI GCNGC 1 cut(s) 513
GsuI CTGGAG 1 cut(s) 108
Hin1II CATG 4 cut(s) 503, 565, 617, 1019
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 2 cut(s) 689, 887
Hpy166II GTNNAC 2 cut(s) 87, 362
Hpy188I TCNGA 3 cut(s) 94, 829, 892
Hpy188III TCNNGA 5 cut(s) 44, 368, 569, 986, 1016
Hpy8I GTNNAC 2 cut(s) 87, 362
HpyAV CCTTC 2 cut(s) 668, 998
HpyCH4III ACNGT 2 cut(s) 73, 874
HpyCH4V TGCA 7 cut(s) 233, 286, 482, 508, 575, 722, 899
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 505, 509, 521
HpyF3I CTNAG 5 cut(s) 147, 165, 267, 828, 891
Hsp92II CATG 4 cut(s) 503, 565, 617, 1019
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 4 cut(s) 40, 46, 208, 1012
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 2 cut(s) 562, 955
MaeI CTAG 3 cut(s) 60, 368, 1033
MaeIII GTNAC 1 cut(s) 333
MalI GATC 4 cut(s) 42, 48, 210, 1014
MboI GATC 4 cut(s) 40, 46, 208, 1012
MboII GAAGA 7 cut(s) 643, 650, 674, 792, 795, 798, 801
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 168
MseI TTAA 2 cut(s) 273, 957
MslI CAYNNNNRTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 901
MwoI GCNNNNNNNGC 4 cut(s) 437, 505, 509, 521
NdeI CATATG 2 cut(s) 235, 313
NdeII GATC 4 cut(s) 40, 46, 208, 1012
NlaIII CATG 4 cut(s) 503, 565, 617, 1019
NlaIV GGNNCC 3 cut(s) 42, 57, 669
NspI RCATGY 2 cut(s) 503, 565
PaeI GCATGC 1 cut(s) 503
PagI TCATGA 1 cut(s) 1015
PciI ACATGT 1 cut(s) 561
PctI GAATGC 1 cut(s) 901
PfeI GAWTC 2 cut(s) 689, 887
PkrI GCNGC 1 cut(s) 514
PscI ACATGT 1 cut(s) 561
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 545
PspN4I GGNNCC 3 cut(s) 42, 57, 669
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 2 cut(s) 466, 679
RsaNI GTAC 2 cut(s) 465, 678
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 273, 957
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 4 cut(s) 40, 46, 208, 1012
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 562, 955
SfcI CTRYAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
SphI GCATGC 1 cut(s) 503
SspI AATATT 1 cut(s) 927
SspMI CTAG 3 cut(s) 60, 368, 1033
TaaI ACNGT 2 cut(s) 73, 874
TaqI TCGA 1 cut(s) 112
TfiI GAWTC 2 cut(s) 689, 887
Tru1I TTAA 2 cut(s) 273, 957
Tru9I TTAA 2 cut(s) 273, 957
TscAI CASTG 1 cut(s) 877
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 330, 570, 638, 857
TspRI CASTG 1 cut(s) 877
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 823
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 2 cut(s) 503, 565
XmiI GTMKAC 1 cut(s) 361
XspI CTAG 3 cut(s) 60, 368, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.