RchiOBHm_Chr3g0477491

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000090
Physical Location & Seq
Forward (+)
23366383 .. 23371926
5544 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44280

Sequence Viewer

Length: 789 bp
ATGGGTGATGAGCAATCCAATCCAAATGGGAACTGTCATGAACCTGTGAAGAAGGCGCGTGACATTATAAAGAATAAGTTGGGAACTCCTGGTGTGATCAATCCAAAACTGAAGAGAGTTCAACTCCGAATGGATAATGAAGAGTGTATTCCAGATGAGAATTGTGACCCTCCTTTAGATCCAGAACCTGTGAAGAAGACCCGTGGCATTACAGTAGGGTTGAAAGCTCATGCTATTGTTAGTGCAACCAAAAAGAGAATTCCAATCAAGATGGACGCGGATCAAAAGCTCCCTGAGACCGTTGAAGCCAATGCTATGTTTGTTAACGAGATTGGGTCATTCACACGCAAATTAGCTCCACTCAAATTCAAATGGTGGAGACAAGTACCAAAGGATGCCAAGAATGACATCAAAGAGGCTCTGACAACTAATTTCGAGTTTGATTGGACTGACCCAGAGCTGAGGATATTTGTGGGGAAAAAGATGGCCAAGGCATTTGGATCTTGGAGATCCAAGTTGCATGGACATTTTAAAAAGTATGCTCATGATTTAGAATATGCTCGAGCACACCCACCCGGAGAAAAGCTCTTTGGTGAAAGATCAATAGATGAATGGGAGTGGCTTTGTGACGAGCTGTTCATAGATGAAACCTATCTGAAACGAAGTCAAGTTAATGCTGCAAATCGAAATCAGAAAGAGTATAATCACTGTGGAGGTTCGCGGCCTTACCAAAAACATATGGAAGCTGCACTTAAGAAAGGTAAAAATGTGTCTTTTGTTGAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

262

Amino Acids

30.11

Weight (kDa)

9.11

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AccII CGCG 3 cut(s) 58, 278, 721
AciI CCGC 2 cut(s) 278, 721
AclWI GGATC 4 cut(s) 173, 288, 504, 508
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 2 cut(s) 258, 365
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 1 cut(s) 387
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 4 cut(s) 122, 223, 305, 370
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 7 cut(s) 227, 289, 356, 460, 586, 634, 746
AluI AGCT 7 cut(s) 227, 289, 356, 460, 586, 634, 746
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 290, 373
AlwI GGATC 4 cut(s) 173, 288, 504, 508
AlwNI CAGNNNCTG 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 2 cut(s) 486, 722
ApeKI GCWGC 2 cut(s) 677, 746
ApoI RAATTY 2 cut(s) 258, 365
AspLEI GCGC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 576
AsuHPI GGTGA 2 cut(s) 17, 605
AvaI CYCGRG 1 cut(s) 561
BalI TGGCCA 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 568
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 664, 733
BccI CCATC 2 cut(s) 265, 478
BciT130I CCWGG 1 cut(s) 90
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 2 cut(s) 290, 373
BfrI CTTAAG 1 cut(s) 752
BisI GCNGC 3 cut(s) 678, 722, 747
BlsI GCNGC 3 cut(s) 679, 723, 748
Bme1390I CCNGG 2 cut(s) 90, 576
BmeT110I CYCGRG 1 cut(s) 561
BmrFI CCNGG 2 cut(s) 90, 576
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 4 cut(s) 108, 140, 570, 602
Bpu10I CCTNAGC 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 202, 489
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 202, 489
BseGI GGATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 285, 452
BseXI GCAGC 2 cut(s) 664, 733
BsgI GTGCAG 1 cut(s) 732
Bsh1236I CGCG 3 cut(s) 58, 278, 721
BshFI GGCC 2 cut(s) 488, 724
BsiHKAI GWGCWC 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 1 cut(s) 576
BsmAI GTCTC 2 cut(s) 290, 373
BsnI GGCC 2 cut(s) 488, 724
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 6 cut(s) 96, 178, 280, 500, 509, 599
BspACI CCGC 2 cut(s) 278, 721
BspANI GGCC 2 cut(s) 488, 724
BspCNI CTCAG 2 cut(s) 286, 453
BspFNI CGCG 3 cut(s) 58, 278, 721
BspHI TCATGA 2 cut(s) 37, 544
BspPI GGATC 4 cut(s) 173, 288, 504, 508
BspTI CTTAAG 1 cut(s) 752
BspTNI GGTCTC 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 202, 489
BssMI GATC 6 cut(s) 96, 178, 280, 500, 509, 599
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 4 cut(s) 35, 214, 301, 710
Bst6I CTCTTC 2 cut(s) 107, 135
BstAFI CTTAAG 1 cut(s) 752
BstDEI CTNAG 2 cut(s) 294, 461
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 3 cut(s) 58, 278, 721
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 6 cut(s) 99, 181, 283, 503, 512, 602
BstMAI GTCTC 2 cut(s) 290, 373
BstMBI GATC 6 cut(s) 96, 178, 280, 500, 509, 599
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 88, 574
BstUI CGCG 3 cut(s) 58, 278, 721
BstV1I GCAGC 2 cut(s) 664, 733
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 3 cut(s) 178, 500, 509
BstYI RGATCY 3 cut(s) 178, 500, 509
BsuRI GGCC 2 cut(s) 488, 724
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 706
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 2 cut(s) 37, 544
CfoI GCGC 1 cut(s) 58
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 386
CviAII CATG 4 cut(s) 38, 230, 521, 545
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 2 cut(s) 294, 461
DpnI GATC 6 cut(s) 98, 180, 282, 502, 511, 601
DpnII GATC 6 cut(s) 96, 178, 280, 500, 509, 599
DraI TTTAAA 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 2 cut(s) 107, 135
EarI CTCTTC 2 cut(s) 107, 135
Eco130I CCWWGG 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 4 cut(s) 41, 233, 524, 548
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FatI CATG 4 cut(s) 37, 229, 520, 544
FauNDI CATATG 1 cut(s) 738
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 678, 722, 747
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 678, 722, 747
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 678, 722, 747
HaeIII GGCC 2 cut(s) 488, 724
HapII CCGG 1 cut(s) 576
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 58
Hin1II CATG 4 cut(s) 41, 233, 524, 548
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 1 cut(s) 576
HphI GGTGA 2 cut(s) 17, 605
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 128, 423, 657, 693
Hpy188III TCNNGA 5 cut(s) 38, 152, 182, 268, 545
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 4 cut(s) 35, 214, 301, 710
HpyCH4V TGCA 4 cut(s) 245, 520, 680, 749
HpyF3I CTNAG 2 cut(s) 294, 461
Hsp92II CATG 4 cut(s) 41, 233, 524, 548
HspAI GCGC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 6 cut(s) 96, 178, 280, 500, 509, 599
LmnI GCTCC 2 cut(s) 294, 361
LpnPI CCDG 9 cut(s) 57, 75, 102, 165, 195, 201, 306, 468, 589
Lsp1109I GCAGC 2 cut(s) 664, 733
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 3 cut(s) 59, 164, 626
MalI GATC 6 cut(s) 98, 180, 282, 502, 511, 601
MboI GATC 6 cut(s) 96, 178, 280, 500, 509, 599
MboII GAAGA 5 cut(s) 61, 124, 152, 205, 208
MflI RGATCY 3 cut(s) 178, 500, 509
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 6 cut(s) 160, 258, 350, 365, 430, 784
MluNI TGGCCA 1 cut(s) 488
MnlI CCTC 4 cut(s) 180, 409, 456, 707
Mox20I TGGCCA 1 cut(s) 488
MscI TGGCCA 1 cut(s) 488
MseI TTAA 4 cut(s) 324, 531, 672, 753
Msp20I TGGCCA 1 cut(s) 488
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 2 cut(s) 90, 576
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 3 cut(s) 58, 278, 721
NciI CCSGG 1 cut(s) 576
NdeI CATATG 1 cut(s) 738
NdeII GATC 6 cut(s) 96, 178, 280, 500, 509, 599
NlaIII CATG 4 cut(s) 41, 233, 524, 548
NmuCI GTSAC 3 cut(s) 59, 164, 626
PaeR7I CTCGAG 1 cut(s) 561
PagI TCATGA 2 cut(s) 37, 544
PkrI GCNGC 3 cut(s) 679, 723, 748
PsiI TTATAA 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspXI VCTCGAGB 1 cut(s) 561
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 3 cut(s) 178, 500, 509
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 4 cut(s) 324, 531, 672, 753
SatI GCNGC 3 cut(s) 678, 722, 747
Sau3AI GATC 6 cut(s) 96, 178, 280, 500, 509, 599
ScrFI CCNGG 2 cut(s) 90, 576
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 561
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 561, 752
SmoI CTYRAG 2 cut(s) 561, 752
Sse9I AATT 6 cut(s) 160, 258, 350, 365, 430, 784
SsiI CCGC 2 cut(s) 278, 721
StyD4I CCNGG 2 cut(s) 88, 574
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 35, 214, 301, 710
TaqI TCGA 3 cut(s) 435, 562, 685
TasI AATT 6 cut(s) 160, 258, 350, 365, 430, 784
TauI GCSGC 1 cut(s) 724
Tru1I TTAA 4 cut(s) 324, 531, 672, 753
Tru9I TTAA 4 cut(s) 324, 531, 672, 753
TscAI CASTG 1 cut(s) 713
TseFI GTSAC 3 cut(s) 59, 164, 626
TseI GCWGC 2 cut(s) 677, 746
Tsp45I GTSAC 3 cut(s) 59, 164, 626
TspDTI ATGAA 5 cut(s) 54, 153, 624, 628, 660
TspRI CASTG 1 cut(s) 713
Vha464I CTTAAG 1 cut(s) 752
XapI RAATTY 2 cut(s) 258, 365
XhoI CTCGAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.