Rorug02G0296400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000090
Physical Location & Seq
Forward (+)
32860148 .. 32864079
3932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0296400.1

Sequence Viewer

Length: 1788 bp
ATGGATAGGCGGAGTCGGCTGTGGCAAAGGAAATCATCAGACAAGAGTTCTGGTGAGACTGAGAGTTCGGGATCGATATCTTCTCATTCTGAAAGATTTTCTGATGATCAGGCATTCCCAACTCATAGCATTCAGTCTCTGGAAGTCACTTCTAAAGCTCTACGCAGTGATGAAGAACTTAATGAAAGTGTTGGGACTTTGAAGGAGAAACTATCAGCTGCTCTTCTTGACAGTAATGCCAAAGATGAATTGGTAAAGCAGCATGCTAAAGTTGCAGAAGAAGCTGTCTCAGGCTGGGAGAAGTCTGAAAATGAAGTGTTGGGCTTAAAACAGCAACTTGAGGCTACAAATCAGAAAAACTCGGCTCTTAAAGACCGAGTTGGTCATCTTGATGGAGCACTGAAAGAATGCGTGAGGCAGCTTCGACAGGCAAGAGAAGAGCAAGACCGGAATACTAATGAGGTTGTTGCTAAGAAAACTCGTGAATGGGATAGTTCAAAGTCCATACTTGAGAGCCAGCTTGCTGATCTCCAAGCACAACTTCAAGCTGCTAAAACTGAAGCTGCTGCCTCTATTGGTAAGGATCTCCGGTTAAAGCTTGAGGCTACTGAAAAAGAGAACTCTGCTCTTAAGCTTAGACTTCGCTCTCGAGTCAAGGAGCTTGAAATTGCAACTATAGAGAGGGATTTGAGCACCCAAGCTGCTGAAGCAGCGAGTAAGCAACATTTAGAGAGCATAAAAAAGGTTGTTAAGCTTGAAGCTGAGTGCCGTAGGCTAAACGCCTTGGCACGTAAAGCACTACCAGATAATGGTCACAAATCCTTTTCTACATCCTCAGTTTATGTAGAATCCATTATAGATAGCCAATCAGATAGTGGGGAGAGGGTACTGGCAATTGAGTTGGATACAGATAAAGTGAGTGACTTGGAGCCAAGTGAATGTGATTCAAGCCAGTCAAATTCACGTACATCTGCTCGTATCACAGATCCTGATAAATTTAATAAAGAAAAAGGTGTTGGAAAAAATCTAATGGTTCCTTCAGTAGATATCAATCTCATGGATGATTTTCTTGAAATGGAAAGGTTTGCTGCAACGCCAGTTACAAAAAATAAGAACTGTTACCTTGAGGCAGGACTCAGATCAAACCAGTGTACTGCTGGAAAAAACCTTCTAGAAACTGAACTTGAAACCATGATTCAAAGGACTGCGGAACTGGAGGGGAAGTTAGAGAAGATGGTGACAGAAAAAGTGGAACTTGAGATGACTATGACTGAGTGCGAAAAGGAGATTCAGACATTAAAAAGTCAGCTACTGGAGGCTGATTTGAAGTTGGAAGACCTTCAAACACAGTTGAATATTGCAAATGGATCAAGGTATGCTGCAGATGAAGAAGTAAAGGCCTGTCAAACAATGAGAGAAGTGGCTGAGTCACAACTAAGATCCGTTCAAACTGAACTTGACTGCATGATTTTAAAAGTCAGTGCACTAGAAGAAGATGTCTCAAAGGAGCGAGCTTTATCAGCTGAAAATGAGGCCAAATGCCAGAAAGTTGAGAATGAGCTATTGATAATGAAACATGAAGCTGAGCTCCAGCGTATGGCTAGTACTAGTGGTGATTTGAAGATACAGCAGGAGAAAGAGCTGGCATTGGCTGCAAGTAAATTTGCAGAGTGCCAGAAAACAATTGCATCTCTTGGCCAACAGTTGAAATCACTTGCAACATTGGAGGACATCTTAATGGACTCAGATACGCCATCGGACCTCATTGATGAAGCTATGCATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

595

Amino Acids

66.23

Weight (kDa)

5.01

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPP PF05911 81 - 189 1.2e-35 Filament-like plant protein, long coiled-coil
FPP PF05911 180 - 268 7.4e-22 Filament-like plant protein, long coiled-coil
FPP PF05911 316 - 382 4.2e-08 Filament-like plant protein, long coiled-coil
FPP PF05911 400 - 574 1.2e-23 Filament-like plant protein, long coiled-coil
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 809, 1597
AciI CCGC 2 cut(s) 10, 1208
AclWI GGATC 5 cut(s) 79, 591, 980, 1375, 1434
AcoI YGGCCR 1 cut(s) 1696
AcsI RAATTY 3 cut(s) 958, 995, 1661
AcuI CTGAAG 3 cut(s) 579, 726, 1023
AfaI GTAC 4 cut(s) 888, 967, 1153, 1606
AfiI CCNNNNNNNGG 2 cut(s) 809, 1597
AflII CTTAAG 1 cut(s) 629
AhlI ACTAGT 1 cut(s) 1607
AjuI GAANNNNNNNTTGG 4 cut(s) 525, 557, 999, 1031
Alw21I GWGCWC 4 cut(s) 400, 695, 1486, 1590
Alw26I GTCTC 4 cut(s) 50, 141, 292, 1504
Alw44I GTGCAC 1 cut(s) 1482
AlwI GGATC 5 cut(s) 79, 591, 980, 1375, 1434
AlwNI CAGNNNCTG 3 cut(s) 139, 989, 1312
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 3 cut(s) 1398, 1533, 1696
ApaLI GTGCAC 1 cut(s) 1482
ApoI RAATTY 3 cut(s) 958, 995, 1661
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
Asp700I GAANNNNTTC 1 cut(s) 1338
AspS9I GGNCC 1 cut(s) 1759
AsuHPI GGTGA 3 cut(s) 65, 1249, 1625
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 1 cut(s) 1759
BaeGI GKGCMC 1 cut(s) 1486
BalI TGGCCA 1 cut(s) 1698
BanII GRGCYC 1 cut(s) 1590
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 1341
Bbv12I GWGCWC 4 cut(s) 400, 695, 1486, 1590
BccI CCATC 3 cut(s) 386, 1228, 1762
BceAI ACGGC 1 cut(s) 753
BciVI GTATCC 1 cut(s) 898
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 4 cut(s) 50, 141, 292, 1504
BcuI ACTAGT 1 cut(s) 1607
BfaI CTAG 4 cut(s) 1172, 1487, 1602, 1608
BfmI CTRYAG 2 cut(s) 675, 1380
BfrI CTTAAG 1 cut(s) 629
BfuI GTATCC 1 cut(s) 898
BlpI GCTNAGC 1 cut(s) 1584
BmcAI AGTACT 1 cut(s) 1606
Bme18I GGWCC 1 cut(s) 1759
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 1 cut(s) 1759
BmiI GGNNCC 2 cut(s) 930, 1035
BmsI GCATC 1 cut(s) 1697
BpiI GAAGAC 1 cut(s) 1341
BpmI CTGGAG 3 cut(s) 1235, 1334, 1574
Bpu1102I GCTNAGC 1 cut(s) 1584
BpuEI CTTGAG 5 cut(s) 359, 530, 620, 1145, 1277
Bsa29I ATCGAT 1 cut(s) 74
BsaAI YACGTR 2 cut(s) 791, 965
BsaBI GATNNNNATC 2 cut(s) 76, 1050
BsaJI CCNNGG 1 cut(s) 783
BsaWI WCCGGW 2 cut(s) 447, 588
BsaXI ACNNNNNCTCC 2 cut(s) 1208, 1238
Bsc4I CCNNNNNNNGG 2 cut(s) 809, 1597
Bse1I ACTGG 6 cut(s) 894, 952, 1097, 1147, 1218, 1317
Bse8I GATNNNNATC 2 cut(s) 76, 1050
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 783
BseGI GGATG 2 cut(s) 830, 1066
BseJI GATNNNNATC 2 cut(s) 76, 1050
BseLI CCNNNNNNNGG 2 cut(s) 809, 1597
BseMII CTCAG 9 cut(s) 51, 303, 753, 849, 1150, 1263, 1416, 1575, 1758
BseNI ACTGG 6 cut(s) 894, 952, 1097, 1147, 1218, 1317
BseSI GKGCMC 1 cut(s) 1486
BseYI CCCAGC 1 cut(s) 294
BshFI GGCC 3 cut(s) 1400, 1535, 1698
BshVI ATCGAT 1 cut(s) 74
BsiHKAI GWGCWC 4 cut(s) 400, 695, 1486, 1590
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 2 cut(s) 448, 589
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 809, 1597
BsmAI GTCTC 4 cut(s) 50, 141, 292, 1504
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 4 cut(s) 113, 129, 413, 1780
BsnI GGCC 3 cut(s) 1400, 1535, 1698
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 4 cut(s) 400, 695, 1486, 1590
Bsp143I GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
Bsp1720I GCTNAGC 1 cut(s) 1584
BspACI CCGC 2 cut(s) 10, 1208
BspANI GGCC 3 cut(s) 1400, 1535, 1698
BspCNI CTCAG 9 cut(s) 52, 302, 754, 848, 1149, 1264, 1417, 1576, 1757
BspDI ATCGAT 1 cut(s) 74
BspHI TCATGA 1 cut(s) 1784
BspLI GGNNCC 2 cut(s) 930, 1035
BspMAI CTGCAG 1 cut(s) 1384
BspPI GGATC 5 cut(s) 79, 591, 980, 1375, 1434
BspQI GCTCTTC 2 cut(s) 228, 432
BspTI CTTAAG 1 cut(s) 629
BsrI ACTGG 6 cut(s) 894, 952, 1097, 1147, 1218, 1317
BssECI CCNNGG 1 cut(s) 783
BssMI GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 783
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 4 cut(s) 233, 1118, 1350, 1704
Bst6I CTCTTC 2 cut(s) 228, 432
BstAFI CTTAAG 1 cut(s) 629
BstAPI GCANNNNNTGC 1 cut(s) 1652
BstBAI YACGTR 2 cut(s) 791, 965
BstC8I GCNNGC 5 cut(s) 264, 518, 522, 1512, 1644
BstF5I GGATG 2 cut(s) 830, 1066
BstKTI GATC 8 cut(s) 74, 109, 529, 586, 988, 1142, 1370, 1442
BstMAI GTCTC 4 cut(s) 50, 141, 292, 1504
BstMBI GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
BstMWI GCNNNNNNNGC 8 cut(s) 16, 272, 281, 707, 710, 794, 1520, 1652
BstNSI RCATGY 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 675, 1380
BstSLI GKGCMC 1 cut(s) 1486
BstV2I GAAGAC 1 cut(s) 1341
BstX2I RGATCY 3 cut(s) 583, 985, 1439
BstYI RGATCY 3 cut(s) 583, 985, 1439
Bsu15I ATCGAT 1 cut(s) 74
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 3 cut(s) 1400, 1535, 1698
BsuTUI ATCGAT 1 cut(s) 74
BtsCI GGATG 2 cut(s) 830, 1066
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 4 cut(s) 172, 398, 1154, 1486
Cac8I GCNNGC 5 cut(s) 264, 518, 522, 1512, 1644
CaiI CAGNNNCTG 3 cut(s) 139, 989, 1312
CciI TCATGA 1 cut(s) 1784
Cfr13I GGNCC 1 cut(s) 1759
ClaI ATCGAT 1 cut(s) 74
Csp6I GTAC 4 cut(s) 887, 966, 1152, 1605
CviAII CATG 6 cut(s) 263, 1057, 1192, 1465, 1577, 1785
CviQI GTAC 4 cut(s) 887, 966, 1152, 1605
DpnI GATC 8 cut(s) 73, 108, 528, 585, 987, 1141, 1369, 1441
DpnII GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
DraI TTTAAA 1 cut(s) 1473
EaeI YGGCCR 1 cut(s) 1696
Eam1104I CTCTTC 2 cut(s) 228, 432
EarI CTCTTC 2 cut(s) 228, 432
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 1588
Eco130I CCWWGG 1 cut(s) 783
Eco147I AGGCCT 1 cut(s) 1400
Eco24I GRGCYC 1 cut(s) 1590
Eco32I GATATC 2 cut(s) 78, 1048
Eco47I GGWCC 1 cut(s) 1759
Eco53kI GAGCTC 1 cut(s) 1588
Eco57I CTGAAG 3 cut(s) 579, 726, 1023
Eco88I CYCGRG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 1588
EcoRV GATATC 2 cut(s) 78, 1048
EcoT14I CCWWGG 1 cut(s) 783
EcoT22I ATGCAT 1 cut(s) 1782
EcoT38I GRGCYC 1 cut(s) 1590
ErhI CCWWGG 1 cut(s) 783
FaeI CATG 6 cut(s) 266, 1060, 1195, 1468, 1580, 1788
FalI AAGNNNNNCTT 4 cut(s) 525, 557, 1239, 1271
FaqI GGGAC 1 cut(s) 208
FatI CATG 6 cut(s) 262, 1056, 1191, 1464, 1576, 1784
FbaI TGATCA 1 cut(s) 106
FokI GGATG 2 cut(s) 817, 1073
FriOI GRGCYC 1 cut(s) 1590
FspBI CTAG 4 cut(s) 1172, 1487, 1602, 1608
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 3 cut(s) 1235, 1334, 1574
HaeIII GGCC 3 cut(s) 1400, 1535, 1698
HapII CCGG 2 cut(s) 448, 589
Hin1II CATG 6 cut(s) 266, 1060, 1195, 1468, 1580, 1788
HindIII AAGCTT 3 cut(s) 596, 632, 752
HinfI GANTC 9 cut(s) 13, 651, 848, 944, 1134, 1195, 1288, 1427, 1742
HpaII CCGG 2 cut(s) 448, 589
HphI GGTGA 3 cut(s) 65, 1249, 1625
Hpy166II GTNNAC 2 cut(s) 1152, 1484
Hpy8I GTNNAC 2 cut(s) 1152, 1484
HpyAV CCTTC 4 cut(s) 196, 1047, 1178, 1349
HpyCH4III ACNGT 4 cut(s) 233, 1118, 1350, 1704
HpyCH4IV ACGT 2 cut(s) 790, 964
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 272, 281, 707, 710, 794, 1520, 1652
HpySE526I ACGT 2 cut(s) 790, 964
Hsp92II CATG 6 cut(s) 266, 1060, 1195, 1468, 1580, 1788
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
LguI GCTCTTC 2 cut(s) 228, 432
LmnI GCTCC 5 cut(s) 395, 658, 928, 1507, 1593
LweI GCATC 1 cut(s) 1697
MaeI CTAG 4 cut(s) 1172, 1487, 1602, 1608
MaeII ACGT 2 cut(s) 790, 964
MaeIII GTNAC 7 cut(s) 145, 812, 920, 1099, 1118, 1237, 1428
MalI GATC 8 cut(s) 73, 108, 528, 585, 987, 1141, 1369, 1441
MboI GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
MfeI CAATTG 2 cut(s) 894, 1683
MflI RGATCY 3 cut(s) 583, 985, 1439
MhlI GDGCHC 4 cut(s) 400, 695, 1486, 1590
MlsI TGGCCA 1 cut(s) 1698
MluCI AATT 7 cut(s) 248, 666, 894, 958, 995, 1661, 1683
MluNI TGGCCA 1 cut(s) 1698
MlyI GAGTC 5 cut(s) 22, 660, 1128, 1436, 1736
MmeI TCCRAC 3 cut(s) 882, 997, 1311
Mox20I TGGCCA 1 cut(s) 1698
Mph1103I ATGCAT 1 cut(s) 1782
MroXI GAANNNNTTC 1 cut(s) 1338
MscI TGGCCA 1 cut(s) 1698
MslI CAYNNNNRTG 2 cut(s) 390, 1736
Msp20I TGGCCA 1 cut(s) 1698
MspA1I CMGCKG 2 cut(s) 218, 1523
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 2 cut(s) 448, 589
MunI CAATTG 2 cut(s) 894, 1683
Mva1269I GAATGC 4 cut(s) 113, 129, 413, 1780
MwoI GCNNNNNNNGC 8 cut(s) 16, 272, 281, 707, 710, 794, 1520, 1652
NdeII GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
NlaIII CATG 6 cut(s) 266, 1060, 1195, 1468, 1580, 1788
NlaIV GGNNCC 2 cut(s) 930, 1035
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 5 cut(s) 145, 812, 920, 1237, 1428
NsiI ATGCAT 1 cut(s) 1782
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 648
PagI TCATGA 1 cut(s) 1784
PceI AGGCCT 1 cut(s) 1400
PciSI GCTCTTC 2 cut(s) 228, 432
PctI GAATGC 4 cut(s) 113, 129, 413, 1780
PdmI GAANNNNTTC 1 cut(s) 1338
PfeI GAWTC 4 cut(s) 848, 944, 1195, 1288
PflMI CCANNNNNTGG 2 cut(s) 809, 1597
PleI GAGTC 5 cut(s) 21, 659, 1128, 1435, 1736
PpsI GAGTC 5 cut(s) 21, 659, 1128, 1435, 1736
Ppu21I YACGTR 2 cut(s) 791, 965
Psp124BI GAGCTC 1 cut(s) 1590
PspFI CCCAGC 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 930, 1035
PspPI GGNCC 1 cut(s) 1759
PstI CTGCAG 1 cut(s) 1384
PstNI CAGNNNCTG 3 cut(s) 139, 989, 1312
PsuI RGATCY 3 cut(s) 583, 985, 1439
PvuII CAGCTG 2 cut(s) 218, 1523
RsaI GTAC 4 cut(s) 888, 967, 1153, 1606
RsaNI GTAC 4 cut(s) 887, 966, 1152, 1605
RseI CAYNNNNRTG 2 cut(s) 390, 1736
SacI GAGCTC 1 cut(s) 1590
SapI GCTCTTC 2 cut(s) 228, 432
Sau3AI GATC 8 cut(s) 71, 106, 526, 583, 985, 1139, 1367, 1439
Sau96I GGNCC 1 cut(s) 1759
ScaI AGTACT 1 cut(s) 1606
SchI GAGTC 5 cut(s) 22, 660, 1128, 1436, 1736
SduI GDGCHC 4 cut(s) 400, 695, 1486, 1590
SfaNI GCATC 1 cut(s) 1697
SfcI CTRYAG 2 cut(s) 675, 1380
Sfr274I CTCGAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 1759
SlaI CTCGAG 1 cut(s) 648
SmiMI CAYNNNNRTG 2 cut(s) 390, 1736
SmlI CTYRAG 7 cut(s) 338, 509, 599, 629, 648, 1124, 1256
SmoI CTYRAG 7 cut(s) 338, 509, 599, 629, 648, 1124, 1256
SpeI ACTAGT 1 cut(s) 1607
SphI GCATGC 1 cut(s) 266
Sse9I AATT 7 cut(s) 248, 666, 894, 958, 995, 1661, 1683
SseBI AGGCCT 1 cut(s) 1400
SsiI CCGC 2 cut(s) 10, 1208
SspI AATATT 1 cut(s) 1357
SspMI CTAG 4 cut(s) 1172, 1487, 1602, 1608
SstI GAGCTC 1 cut(s) 1590
StuI AGGCCT 1 cut(s) 1400
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 4 cut(s) 233, 1118, 1350, 1704
TaiI ACGT 2 cut(s) 793, 967
TaqI TCGA 3 cut(s) 74, 424, 649
TaqII GACCGA 1 cut(s) 390
TasI AATT 7 cut(s) 248, 666, 894, 958, 995, 1661, 1683
TatI WGTACW 2 cut(s) 1151, 1604
TfiI GAWTC 4 cut(s) 848, 944, 1195, 1288
TscAI CASTG 4 cut(s) 172, 405, 1154, 1486
TseFI GTSAC 5 cut(s) 145, 812, 920, 1237, 1428
Tsp45I GTSAC 5 cut(s) 145, 812, 920, 1237, 1428
TspDTI ATGAA 9 cut(s) 186, 198, 261, 327, 1401, 1586, 1593, 1773, 1785
TspGWI ACGGA 1 cut(s) 1432
TspRI CASTG 4 cut(s) 172, 405, 1154, 1486
Van91I CCANNNNNTGG 2 cut(s) 809, 1597
Vha464I CTTAAG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 1482
VpaK11BI GGWCC 1 cut(s) 1759
XapI RAATTY 3 cut(s) 958, 995, 1661
XbaI TCTAGA 1 cut(s) 1171
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 3 cut(s) 247, 872, 1154
XhoI CTCGAG 1 cut(s) 648
XmnI GAANNNNTTC 1 cut(s) 1338
XspI CTAG 4 cut(s) 1172, 1487, 1602, 1608
ZrmI AGTACT 1 cut(s) 1606
Zsp2I ATGCAT 1 cut(s) 1782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.