Rmu_sc0004149.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004149.1
OG0000090
Physical Location & Seq
Forward (+)
33299 .. 35798
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004149.1_g000005.1.cds

Sequence Viewer

Length: 1152 bp
atgttgaaatcgaaatcattattgatgaagaaaactgggaatgagcagaaacaacaaaagagacaaccacaacaactaggaaagaggcagccacaacaactaggaaagaggcagccaccaccaccagagctgcaacaacctgagccatcacagcaggtgcaaccacagccaccaatacattcaggtgtttctgatcatgacatatcttctgaggtcaaaaacacacgtggtgttacaaaggggataggaactcatgatattgtcacagcttctaatgagagaattctaattcagatgaatgaggatcaaaagctcccaaatggtgtccaagctaattctaggtttgtttcagaaattgggtctcgaacacgttccttagctccacttaatgtcaaaacctggaagcaagtcaaaccagaagataaagacgaaattaaaaaggggttgttgcataagtttgatgtcaatttggacgaacctgccattgcaaaatttgttgaaaataagatgaacaacacattcagatcttggaaaggcaaactgcacaagcacttcaaaaaatattctaatgacattgattatgcaaggtctcaccctcccaatgagaaggtgtttggtgatagggagataagtgattgggagtggttgtgtgacaatttgtacacagatcaagcgtatcagaaaggtaaaaatgtgacctatgttgagaattggggtctcatgcatcaacatcgaggcagcaatggtggtgtttggatcaatgaagaagcggagaggacagggaaaaatctaattgaagagttgattaaaaccaagcaacaattagctgagtctgaggataccccatttgaagatgttgtagtgcctatccctatgcaattagatatcttggctaaggagctcggaactatgaagggtaagaccattcgaggtgtgggctatggtcttaaaaatgacatattttgttcttcattccctgcatccacgtctaacccaacaaatgctcaacttatgaggtacattattctattggaagaacgacttacttctcttgagggtgagaaacaacctcaacctcctacacatgatgtggatgaagagggtggtgaggagggtgatgaggatgaggatgaggatatggatgtgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

383

Amino Acids

43.58

Weight (kDa)

5.79

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 2 cut(s) 145, 487
AciI CCGC 1 cut(s) 770
AclWI GGATC 2 cut(s) 312, 764
AcsI RAATTY 2 cut(s) 282, 491
AcvI CACGTG 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 2 cut(s) 662, 1019
AflIII ACRYGT 2 cut(s) 224, 368
AgsI TTSAA 5 cut(s) 7, 500, 556, 797, 851
AjiI CACGTC 1 cut(s) 987
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 7 cut(s) 130, 269, 313, 332, 380, 827, 901
AluI AGCT 7 cut(s) 130, 269, 313, 332, 380, 827, 901
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 4 cut(s) 55, 366, 594, 722
AlwI GGATC 2 cut(s) 312, 764
ApeKI GCWGC 4 cut(s) 88, 112, 130, 738
ApoI RAATTY 2 cut(s) 282, 491
Asp700I GAANNNNTTC 1 cut(s) 370
AsuHPI GGTGA 5 cut(s) 584, 629, 1070, 1118, 1127
BanII GRGCYC 1 cut(s) 903
BbrPI CACGTG 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 4 cut(s) 100, 117, 124, 750
BccI CCATC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 1 cut(s) 400
BciVI GTATCC 1 cut(s) 832
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 4 cut(s) 55, 366, 594, 722
BfaI CTAG 3 cut(s) 77, 101, 339
BfuAI ACCTGC 2 cut(s) 145, 487
BfuI GTATCC 1 cut(s) 832
BglII AGATCT 1 cut(s) 524
BisI GCNGC 4 cut(s) 89, 113, 131, 739
BlsI GCNGC 4 cut(s) 90, 114, 132, 740
Bme1390I CCNGG 1 cut(s) 400
BmgBI CACGTC 1 cut(s) 987
BmrFI CCNGG 1 cut(s) 400
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 733, 989
BmuI ACTGGG 1 cut(s) 45
Bpu10I CCTNAGC 3 cut(s) 141, 376, 894
BpuEI CTTGAG 1 cut(s) 1073
BsaAI YACGTR 1 cut(s) 227
BsaI GGTCTC 3 cut(s) 366, 594, 722
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse1I ACTGG 1 cut(s) 40
Bse3DI GCAATG 2 cut(s) 483, 748
BseBI CCWGG 1 cut(s) 400
BseGI GGATG 5 cut(s) 980, 1099, 1129, 1135, 1147
BseMI GCAATG 2 cut(s) 483, 748
BseMII CTCAG 4 cut(s) 132, 201, 819, 825
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 1124
BseXI GCAGC 4 cut(s) 100, 117, 124, 750
BsgI GTGCAG 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 903
BsmAI GTCTC 4 cut(s) 55, 366, 594, 722
Bso31I GGTCTC 3 cut(s) 366, 594, 722
Bsp1286I GDGCHC 1 cut(s) 903
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 5 cut(s) 193, 304, 524, 667, 756
BspACI CCGC 1 cut(s) 770
BspCNI CTCAG 4 cut(s) 133, 202, 820, 826
BspHI TCATGA 2 cut(s) 196, 253
BspMI ACCTGC 2 cut(s) 145, 487
BspPI GGATC 2 cut(s) 312, 764
BspTNI GGTCTC 3 cut(s) 366, 594, 722
BsrDI GCAATG 2 cut(s) 483, 748
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 40
BssMI GATC 5 cut(s) 193, 304, 524, 667, 756
Bst2UI CCWGG 1 cut(s) 400
Bst6I CTCTTC 2 cut(s) 792, 1092
BstAUI TGTACA 1 cut(s) 660
BstBAI YACGTR 1 cut(s) 227
BstDEI CTNAG 6 cut(s) 141, 210, 376, 828, 834, 894
BstF5I GGATG 5 cut(s) 980, 1099, 1129, 1135, 1147
BstKTI GATC 5 cut(s) 196, 307, 527, 670, 759
BstMAI GTCTC 4 cut(s) 55, 366, 594, 722
BstMBI GATC 5 cut(s) 193, 304, 524, 667, 756
BstMWI GCNNNNNNNGC 2 cut(s) 151, 166
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 398
BstV1I GCAGC 4 cut(s) 100, 117, 124, 750
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuI GTATCC 1 cut(s) 832
BtrI CACGTC 1 cut(s) 987
BtsCI GGATG 5 cut(s) 980, 1099, 1129, 1135, 1147
BveI ACCTGC 2 cut(s) 145, 487
CciI TCATGA 2 cut(s) 196, 253
Csp6I GTAC 2 cut(s) 661, 1018
CviAII CATG 4 cut(s) 197, 254, 721, 1085
CviQI GTAC 2 cut(s) 661, 1018
DdeI CTNAG 6 cut(s) 141, 210, 376, 828, 834, 894
DpnI GATC 5 cut(s) 195, 306, 526, 669, 758
DpnII GATC 5 cut(s) 193, 304, 524, 667, 756
DraIII CACNNNGTG 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 792, 1092
EarI CTCTTC 2 cut(s) 792, 1092
Ecl136II GAGCTC 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 903
Eco31I GGTCTC 3 cut(s) 366, 594, 722
Eco32I GATATC 1 cut(s) 886
Eco53kI GAGCTC 1 cut(s) 901
Eco72I CACGTG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 901
EcoRI GAATTC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 398
EcoRV GATATC 1 cut(s) 886
EcoT22I ATGCAT 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 903
FaeI CATG 4 cut(s) 200, 257, 724, 1088
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FatI CATG 4 cut(s) 196, 253, 720, 1084
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 89, 113, 131, 739
FokI GGATG 4 cut(s) 967, 1106, 1136, 1142
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 4 cut(s) 89, 113, 131, 739
FspBI CTAG 3 cut(s) 77, 101, 339
GluI GCNGC 4 cut(s) 89, 113, 131, 739
Hin1II CATG 4 cut(s) 200, 257, 724, 1088
HinfI GANTC 1 cut(s) 830
HphI GGTGA 5 cut(s) 584, 629, 1070, 1118, 1127
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 8 cut(s) 193, 211, 294, 352, 524, 681, 835, 905
Hpy188III TCNNGA 4 cut(s) 197, 254, 363, 1052
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 2 cut(s) 601, 907
HpyCH4IV ACGT 3 cut(s) 226, 370, 986
HpyCH4V TGCA 9 cut(s) 133, 160, 451, 488, 544, 584, 724, 877, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 166
HpyF3I CTNAG 6 cut(s) 141, 210, 376, 828, 834, 894
HpySE526I ACGT 3 cut(s) 226, 370, 986
Hsp92II CATG 4 cut(s) 200, 257, 724, 1088
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 193, 304, 524, 667, 756
LmnI GCTCC 3 cut(s) 318, 385, 898
Lsp1109I GCAGC 4 cut(s) 100, 117, 124, 750
LweI GCATC 2 cut(s) 733, 989
MaeI CTAG 3 cut(s) 77, 101, 339
MaeII ACGT 3 cut(s) 226, 370, 986
MaeIII GTNAC 4 cut(s) 232, 262, 650, 694
MalI GATC 5 cut(s) 195, 306, 526, 669, 758
MboI GATC 5 cut(s) 193, 304, 524, 667, 756
MboII GAAGA 9 cut(s) 40, 198, 431, 776, 809, 863, 960, 1046, 1109
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 1 cut(s) 903
MlyI GAGTC 1 cut(s) 839
Mph1103I ATGCAT 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 4 cut(s) 387, 435, 807, 948
MslI CAYNNNNRTG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 400
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 151, 166
NdeII GATC 5 cut(s) 193, 304, 524, 667, 756
NlaIII CATG 4 cut(s) 200, 257, 724, 1088
NmuCI GTSAC 3 cut(s) 262, 650, 694
NsiI ATGCAT 1 cut(s) 726
PagI TCATGA 2 cut(s) 196, 253
PaqCI CACCTGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 90, 114, 132, 740
PleI GAGTC 1 cut(s) 838
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 1 cut(s) 838
Ppu21I YACGTR 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 903
Psp6I CCWGG 1 cut(s) 398
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 2 cut(s) 662, 1019
RsaNI GTAC 2 cut(s) 661, 1018
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 903
SaqAI TTAA 4 cut(s) 387, 435, 807, 948
SatI GCNGC 4 cut(s) 89, 113, 131, 739
Sau3AI GATC 5 cut(s) 193, 304, 524, 667, 756
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 903
SfaNI GCATC 2 cut(s) 733, 989
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
SsiI CCGC 1 cut(s) 770
SspI AATATT 1 cut(s) 563
SspMI CTAG 3 cut(s) 77, 101, 339
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 398
TaiI ACGT 3 cut(s) 229, 373, 989
TaqI TCGA 4 cut(s) 11, 364, 733, 928
TatI WGTACW 1 cut(s) 660
Tru1I TTAA 4 cut(s) 387, 435, 807, 948
Tru9I TTAA 4 cut(s) 387, 435, 807, 948
TseFI GTSAC 3 cut(s) 262, 650, 694
TseI GCWGC 4 cut(s) 88, 112, 130, 738
Tsp45I GTSAC 3 cut(s) 262, 650, 694
TspDTI ATGAA 7 cut(s) 41, 311, 524, 777, 926, 960, 1110
XapI RAATTY 2 cut(s) 282, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 77, 101, 339
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.