Rh1AG409200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000090
Physical Location & Seq
Reverse (-)
63817137 .. 63819177
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG409200.1

Sequence Viewer

Length: 924 bp
ATGGCTCAAGGGAGAGGGAAGCGGATAAGGAAGGTTCAAAAAGTGCCTCCACCTCAACAGCCAACTACAACAACTATGGCTAATAATGTGTCAGCTAGACCTACTGTGCGTGAGAATGTGCCAGCAACGCCAACTATGACAGATAATGCATTTGCTCCCCCTACTGTGCGTGAAAATGTGCCAGCAACAACTACTGTACATGCTCATGTCAGTCAAGTACAAGCAAGAGCTAACACGCCACCAAGAGCTAATTTGCCACCACAAACCAACGTGCCACTACCAGCTAACGTGGCTCCATCAATTCATCAACTGCCTACCCAACAAGAAATCCCTTTTGTGGCCATTGGAATGAAAAGGAAGCGTGGTAAATCCTGTGGTAAAGCTCTTCAGGAGCTTATAAAGGCTAATGGTGGACCTCTGCGTGTTGACTTTCATCCGACCATTCATGTCCCTTCTGATGACACAATTTCTAAAATGTTTACTTCTGAGATAGGAATTACTATTCGGGGTGGGGCACCAGTATGCAAATATGGCTGGTCTGATATTGATGAAGAAGATGATAAGAGGTTGCTAAGAGAGGAATTGCGGGTGTTCTTTACGGTGGACTTAACTGATCCAGCTGTTGTTGCATATGTGGATTCCAAAATGTCTACTGCCTACTCCCAATTCAAGACTCGACTAAAGAAGGAATGGAAAGCATTTGGCTCACCTGAGCTAGGAAGAGCAAACCTGCCTAGTGCAGATTTATGGAATGGGAGACCTGTCTCACATTGGCACTGGCTTTGTGACAACATATACACCAACCAGTCTTGCATTGAGATTGCGGAAAAGAATTCTGCTAACAGGTATATGCAACAACATACTCATAGAGCTGGTGCACGGCCATACGTGCAACATGCTTTGGTGGCCTCTAAGGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

307

Amino Acids

34.03

Weight (kDa)

9.74

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 650
AciI CCGC 3 cut(s) 22, 586, 824
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 2 cut(s) 339, 881
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 198, 219
AfiI CCNNNNNNNGG 2 cut(s) 337, 716
AgsI TTSAA 2 cut(s) 38, 670
AluBI AGCT 9 cut(s) 95, 230, 248, 284, 383, 394, 620, 715, 872
AluI AGCT 9 cut(s) 95, 230, 248, 284, 383, 394, 620, 715, 872
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 2 cut(s) 751, 769
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 1 cut(s) 608
AoxI GGCC 3 cut(s) 339, 881, 906
ApaLI GTGCAC 1 cut(s) 876
ApoI RAATTY 1 cut(s) 832
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 699
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 2 cut(s) 517, 880
BalI TGGCCA 1 cut(s) 341
BanI GGYRCC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 880
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 751, 769
BfaI CTAG 3 cut(s) 96, 716, 735
BfuAI ACCTGC 1 cut(s) 738
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 294, 516
Bpu10I CCTNAGC 1 cut(s) 711
BsaAI YACGTR 1 cut(s) 889
BsaI GGTCTC 1 cut(s) 751
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 716
Bse1I ACTGG 3 cut(s) 518, 782, 805
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 2 cut(s) 337, 716
BseMII CTCAG 2 cut(s) 477, 702
BseNI ACTGG 3 cut(s) 518, 782, 805
BseSI GKGCMC 2 cut(s) 517, 880
BsgI GTGCAG 1 cut(s) 759
BshFI GGCC 3 cut(s) 341, 883, 908
BshNI GGYRCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 880
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 337, 716
BsmAI GTCTC 2 cut(s) 751, 769
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 341, 883, 908
Bso31I GGTCTC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 517, 880
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 3 cut(s) 22, 586, 824
BspANI GGCC 3 cut(s) 341, 883, 908
BspCNI CTCAG 2 cut(s) 478, 703
BspLI GGNNCC 2 cut(s) 294, 516
BspMI ACCTGC 1 cut(s) 738
BspPI GGATC 1 cut(s) 608
BspQI GCTCTTC 2 cut(s) 390, 715
BspT107I GGYRCC 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 3 cut(s) 518, 782, 805
BssMI GATC 1 cut(s) 613
Bst4CI ACNGT 4 cut(s) 106, 166, 196, 601
Bst6I CTCTTC 2 cut(s) 390, 715
BstAUI TGTACA 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 889
BstC8I GCNNGC 2 cut(s) 123, 183
BstDEI CTNAG 4 cut(s) 486, 572, 711, 912
BstENI CCTNNNNNAGG 1 cut(s) 714
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 2 cut(s) 751, 769
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 6 cut(s) 127, 290, 531, 626, 889, 905
BstNSI RCATGY 2 cut(s) 203, 899
BstSLI GKGCMC 2 cut(s) 517, 880
BsuRI GGCC 3 cut(s) 341, 883, 908
BtsCI GGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 775
BveI ACCTGC 1 cut(s) 738
Cac8I GCNNGC 2 cut(s) 123, 183
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 2 cut(s) 197, 218
CviAII CATG 4 cut(s) 200, 206, 446, 896
CviQI GTAC 2 cut(s) 197, 218
DdeI CTNAG 4 cut(s) 486, 572, 711, 912
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
EaeI YGGCCR 2 cut(s) 339, 881
Eam1104I CTCTTC 2 cut(s) 390, 715
EarI CTCTTC 2 cut(s) 390, 715
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 371
EcoNI CCTNNNNNAGG 1 cut(s) 714
EcoRI GAATTC 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 151
FaeI CATG 4 cut(s) 203, 209, 449, 899
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 199, 205, 445, 895
FauI CCCGC 1 cut(s) 579
FauNDI CATATG 1 cut(s) 631
FblI GTMKAC 1 cut(s) 650
FokI GGATG 1 cut(s) 420
FspBI CTAG 3 cut(s) 96, 716, 735
HaeIII GGCC 3 cut(s) 341, 883, 908
Hin1II CATG 4 cut(s) 203, 209, 449, 899
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 2 cut(s) 638, 673
HphI GGTGA 1 cut(s) 699
Hpy166II GTNNAC 6 cut(s) 413, 427, 480, 604, 651, 878
Hpy188I TCNGA 4 cut(s) 438, 457, 487, 541
Hpy188III TCNNGA 2 cut(s) 389, 670
Hpy8I GTNNAC 6 cut(s) 413, 427, 480, 604, 651, 878
HpyAV CCTTC 3 cut(s) 25, 462, 679
HpyCH4III ACNGT 4 cut(s) 106, 166, 196, 601
HpyCH4IV ACGT 3 cut(s) 270, 288, 888
HpyCH4V TGCA 8 cut(s) 149, 525, 629, 740, 813, 853, 878, 892
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 290, 531, 626, 889, 905
HpyF3I CTNAG 4 cut(s) 486, 572, 711, 912
HpySE526I ACGT 3 cut(s) 270, 288, 888
Hsp92II CATG 4 cut(s) 203, 209, 449, 899
Kzo9I GATC 1 cut(s) 613
LguI GCTCTTC 2 cut(s) 390, 715
LmnI GCTCC 3 cut(s) 160, 298, 391
MaeI CTAG 3 cut(s) 96, 716, 735
MaeII ACGT 3 cut(s) 270, 288, 888
MaeIII GTNAC 1 cut(s) 785
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 4 cut(s) 377, 563, 566, 732
MhlI GDGCHC 2 cut(s) 517, 880
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 8 cut(s) 250, 300, 465, 495, 581, 665, 832, 919
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 7 cut(s) 8, 57, 63, 426, 558, 571, 919
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 151
MscI TGGCCA 1 cut(s) 341
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 3 cut(s) 204, 347, 520
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 620
MwoI GCNNNNNNNGC 6 cut(s) 127, 290, 531, 626, 889, 905
NdeI CATATG 1 cut(s) 631
NdeII GATC 1 cut(s) 613
NlaIII CATG 4 cut(s) 203, 209, 449, 899
NlaIV GGNNCC 2 cut(s) 294, 516
NmuCI GTSAC 1 cut(s) 785
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 2 cut(s) 203, 899
PciSI GCTCTTC 2 cut(s) 390, 715
PfeI GAWTC 1 cut(s) 638
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
Ppu21I YACGTR 1 cut(s) 889
PsiI TTATAA 1 cut(s) 398
PspN4I GGNNCC 2 cut(s) 294, 516
PspPI GGNCC 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 2 cut(s) 198, 219
RsaNI GTAC 2 cut(s) 197, 218
RseI CAYNNNNRTG 3 cut(s) 204, 347, 520
SapI GCTCTTC 2 cut(s) 390, 715
SaqAI TTAA 1 cut(s) 608
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 667
SduI GDGCHC 2 cut(s) 517, 880
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 3 cut(s) 204, 347, 520
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 8 cut(s) 250, 300, 465, 495, 581, 665, 832, 919
SsiI CCGC 3 cut(s) 22, 586, 824
SspMI CTAG 3 cut(s) 96, 716, 735
TaaI ACNGT 4 cut(s) 106, 166, 196, 601
TaiI ACGT 3 cut(s) 273, 291, 891
TaqI TCGA 1 cut(s) 676
TasI AATT 8 cut(s) 250, 300, 465, 495, 581, 665, 832, 919
TatI WGTACW 2 cut(s) 196, 217
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 1 cut(s) 782
TseFI GTSAC 1 cut(s) 785
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 5 cut(s) 293, 365, 422, 434, 564
TspRI CASTG 1 cut(s) 782
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 714
XapI RAATTY 1 cut(s) 832
XceI RCATGY 2 cut(s) 203, 899
XmiI GTMKAC 1 cut(s) 650
XspI CTAG 3 cut(s) 96, 716, 735
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.