RchiOBHm_Chr2g0094421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000090
Physical Location & Seq
Reverse (-)
7345043 .. 7349370
4328 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46943

Sequence Viewer

Length: 744 bp
ATGTCCACTGCTTACTCCCAATTCAAGTCTCGACTGAAGAAGGAGTGGCAAGGATTTGGCTCACCTGAGCTGGGACGAGCAAATCTACCTAATGCAGATCTATGGAATGAGAGGCATGTCTCGCATTGGCACTGGCTTTGTGACAACATATACACCAACCAGTCTTGCATAAAAATTGCGGAAAAGAATTCTGCTAATCGTTATATGCAGCAACATACCCACAGGGCCGGTGCACGACCATATGTGCAACATGCTTTGGCAGCCTCTAAGGAAGGGAAGGAGTTGTCGCTCATAAATAACTGGGGAGGGAAACACAAGGATGATAATCATGAATGGATTAATGAGGTTGCCAAGAAAAAATATGAGAAGATGGAGGTTGAGAGGATTGCTCTTATAGAGAAGTTGTACCGAGAGGCTCCCGAGGGTACTCCACATGATTCTATCAAACTGACTTTGGAAGCAGAGTTTCCAATAATGGCTAAGGAGCTTGGGAGGAAGGGTAGGATGATCCATGGCATTGGTAACGTCCCTCATATACATTCTAACATACACAGAGTATCTGCATGTGCTGGCACTAATTCTGAGGTACCTGAATTACGTGCTCTTATCAACCAACTTACCATCAACATGCTCAGTATGAAGGAACAAAATGGACACTTGAAGGCTCAAGTAGAAAGCTTATTAAGGCAATCTCCTGGACAGATGAGTGAGGATGACTTCCCCCACCCCAGCACCAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

247

Amino Acids

28.25

Weight (kDa)

8.66

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 41 - 125 8e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 586
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 3 cut(s) 407, 427, 588
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 25, 661
AjnI CCWGG 1 cut(s) 694
AluBI AGCT 3 cut(s) 70, 487, 678
AluI AGCT 3 cut(s) 70, 487, 678
Alw21I GWGCWC 2 cut(s) 235, 604
Alw26I GTCTC 2 cut(s) 33, 124
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 1 cut(s) 502
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 1 cut(s) 225
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 208, 260
ApoI RAATTY 1 cut(s) 187
AseI ATTAAT 1 cut(s) 339
Asp718I GGTACC 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 586
Bbv12I GWGCWC 2 cut(s) 235, 604
BbvI GCAGC 2 cut(s) 220, 272
BccI CCATC 2 cut(s) 364, 629
BciT130I CCWGG 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 33, 124
BglII AGATCT 1 cut(s) 97
BisI GCNGC 2 cut(s) 209, 261
BlsI GCNGC 2 cut(s) 210, 262
Bme1390I CCNGG 1 cut(s) 696
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 417, 588
BmrFI CCNGG 1 cut(s) 696
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu10I CCTNAGC 2 cut(s) 66, 480
BpuEI CTTGAG 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 420, 511
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 137, 160, 305
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 420, 511
BseGI GGATG 3 cut(s) 325, 510, 718
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 3 cut(s) 57, 573, 646
BseNI ACTGG 3 cut(s) 137, 160, 305
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 220, 272
BseYI CCCAGC 2 cut(s) 70, 728
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 586
BsiHKAI GWGCWC 2 cut(s) 235, 604
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 87, 512
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 33, 124
BsmFI GGGAC 2 cut(s) 87, 512
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 235, 604
Bsp143I GATC 2 cut(s) 97, 507
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 3 cut(s) 58, 574, 645
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 417, 588
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 3 cut(s) 137, 160, 305
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 420, 511
BssMI GATC 2 cut(s) 97, 507
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 5 cut(s) 66, 267, 480, 582, 632
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 3 cut(s) 325, 510, 718
BstKTI GATC 2 cut(s) 100, 510
BstMAI GTCTC 2 cut(s) 33, 124
BstMBI GATC 2 cut(s) 97, 507
BstMWI GCNNNNNNNGC 2 cut(s) 121, 260
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 4 cut(s) 119, 254, 567, 631
BstSCI CCNGG 1 cut(s) 694
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 220, 272
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 518
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 3 cut(s) 325, 510, 718
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 130
Cac8I GCNNGC 1 cut(s) 571
CciI TCATGA 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 406, 426, 587
CviAII CATG 7 cut(s) 116, 251, 329, 434, 512, 564, 628
CviQI GTAC 3 cut(s) 406, 426, 587
DdeI CTNAG 5 cut(s) 66, 267, 480, 582, 632
DpnI GATC 2 cut(s) 99, 509
DpnII GATC 2 cut(s) 97, 507
Eco130I CCWWGG 1 cut(s) 511
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 7 cut(s) 119, 254, 332, 437, 515, 567, 631
FaqI GGGAC 2 cut(s) 87, 512
FatI CATG 7 cut(s) 115, 250, 328, 433, 511, 563, 627
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 209, 261
FokI GGATG 3 cut(s) 332, 517, 725
Fsp4HI GCNGC 2 cut(s) 209, 261
GluI GCNGC 2 cut(s) 209, 261
GsaI CCCAGC 2 cut(s) 74, 732
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 228
Hin1II CATG 7 cut(s) 119, 254, 332, 437, 515, 567, 631
HindIII AAGCTT 1 cut(s) 676
HinfI GANTC 1 cut(s) 437
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 6, 233
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 3 cut(s) 30, 329, 419
Hpy8I GTNNAC 2 cut(s) 6, 233
HpyAV CCTTC 6 cut(s) 34, 266, 271, 490, 634, 655
HpyCH4IV ACGT 2 cut(s) 525, 598
HpyCH4V TGCA 6 cut(s) 95, 168, 208, 233, 247, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 260
HpyF3I CTNAG 5 cut(s) 66, 267, 480, 582, 632
HpySE526I ACGT 2 cut(s) 525, 598
Hsp92II CATG 7 cut(s) 119, 254, 332, 437, 515, 567, 631
KpnI GGTACC 1 cut(s) 590
Kzo9I GATC 2 cut(s) 97, 507
LmnI GCTCC 2 cut(s) 421, 484
Lsp1109I GCAGC 2 cut(s) 220, 272
MaeII ACGT 2 cut(s) 525, 598
MaeIII GTNAC 2 cut(s) 140, 521
MalI GATC 2 cut(s) 99, 509
MboI GATC 2 cut(s) 97, 507
MboII GAAGA 2 cut(s) 49, 379
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 2 cut(s) 235, 604
MluCI AATT 5 cut(s) 20, 174, 187, 577, 593
MseI TTAA 2 cut(s) 339, 683
MslI CAYNNNNRTG 2 cut(s) 318, 626
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 2 cut(s) 121, 260
NcoI CCATGG 1 cut(s) 511
NdeI CATATG 1 cut(s) 241
NdeII GATC 2 cut(s) 97, 507
NlaIII CATG 7 cut(s) 119, 254, 332, 437, 515, 567, 631
NlaIV GGNNCC 2 cut(s) 417, 588
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 4 cut(s) 119, 254, 567, 631
PagI TCATGA 1 cut(s) 328
PfeI GAWTC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 694
PkrI GCNGC 2 cut(s) 210, 262
Ppu21I YACGTR 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 2 cut(s) 70, 728
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 2 cut(s) 417, 588
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 3 cut(s) 407, 427, 588
RsaNI GTAC 3 cut(s) 406, 426, 587
RseI CAYNNNNRTG 2 cut(s) 318, 626
SaqAI TTAA 2 cut(s) 339, 683
SatI GCNGC 2 cut(s) 209, 261
Sau3AI GATC 2 cut(s) 97, 507
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 2 cut(s) 235, 604
SmiMI CAYNNNNRTG 2 cut(s) 318, 626
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
Sse9I AATT 5 cut(s) 20, 174, 187, 577, 593
SsiI CCGC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 511
TaiI ACGT 2 cut(s) 528, 601
TaqI TCGA 1 cut(s) 31
TasI AATT 5 cut(s) 20, 174, 187, 577, 593
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 2 cut(s) 339, 683
Tru9I TTAA 2 cut(s) 339, 683
TscAI CASTG 2 cut(s) 13, 137
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 208, 260
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 345, 653
TspRI CASTG 2 cut(s) 13, 137
VneI GTGCAC 1 cut(s) 231
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 187
XceI RCATGY 4 cut(s) 119, 254, 567, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.