Rorug07G0313600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000090
Physical Location & Seq
Forward (+)
31498469 .. 31503567
5099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0313600.1

Sequence Viewer

Length: 732 bp
ATGCTTCCTCCTTCATTATATGGTCATTTTGGGGACTTGACTGACCACCACCACCACCTGACTTTGTCCTCCTCCGCCGCCAACGGCAACATCGACCGCGTCCTCTTCCAAGAGCTCATCGAGATCATCCCTCTTGTCCAGTCCCTCATCGATCCGGAAGCCAGCAGTTCATTTACGCGGCGCGGTTCGGTCACCTACAGCAAGACACCTTCGAGAGGCTCCTTATCCAACAAAAAGGTGTGCAACACGTTAAAAAAAGGGCTGGGCATTGGTCGAAAGATTATCAGAAGATGGAAGCTTCAAAATTGGCCATGTGGTTTTCTTTGTGACTCACCTCCAAAATCAGTGAAGAACCTCTGTAAAAAGAACAATATAATTTGGACGTGGGAATGGCTGATTGATTTTTGTTTGGATAAGGAATTATATGAGGGGAGATATGACATTTTACTGGGTTCACTCCCAGTTTTGATTTTGTCTATGAGCTATGAGCTATCATCTTTAACTTCTTCATCGTCTTCATCACACAGAACTAACACCAATCGTGTTGGGTTGAAGGATTTCACGAACCCACTGTTCTCCTCTCTCTCAGATTTGATCGCAAGCAAATTGGGTTTTGCAAAATTGAAGCAAAATCTTCGAATCAACGGTGATTGTTTCCTAATTGAATTCCGTTTGTTCTTGAAACATCCCAAAGGGTCTCAACTTCAGTTAAGAGGCCAAGGTTCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.34

Weight (kDa)

9.57

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 99, 178, 183
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 5 cut(s) 75, 78, 97, 178, 183
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 1 cut(s) 665
AcuI CTGAAG 1 cut(s) 689
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 302, 553, 625, 665, 682
AjiI CACGTC 1 cut(s) 384
AluBI AGCT 4 cut(s) 115, 298, 483, 490
AluI AGCT 4 cut(s) 115, 298, 483, 490
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 2 cut(s) 308, 715
ApoI RAATTY 1 cut(s) 665
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 184, 324, 659
AsuII TTCGAA 1 cut(s) 637
BalI TGGCCA 1 cut(s) 310
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BcoDI GTCTC 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 2 cut(s) 78, 179
BlsI GCNGC 2 cut(s) 79, 180
BmgBI CACGTC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 220
BmrI ACTGGG 2 cut(s) 455, 458
BmuI ACTGGG 2 cut(s) 455, 458
BpiI GAAGAC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 637
Bsa29I ATCGAT 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 3 cut(s) 139, 453, 461
BseAI TCCGGA 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 126, 685
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 3 cut(s) 139, 453, 461
BseRI GAGGAG 2 cut(s) 61, 568
BseYI CCCAGC 1 cut(s) 262
Bsh1236I CGCG 3 cut(s) 99, 178, 183
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 310, 717
BshVI ATCGAT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 2 cut(s) 47, 127
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 702
BsmFI GGGAC 2 cut(s) 47, 127
BsnI GGCC 2 cut(s) 310, 717
Bso31I GGTCTC 1 cut(s) 702
Bsp119I TTCGAA 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 3 cut(s) 123, 151, 594
BspACI CCGC 5 cut(s) 75, 78, 97, 178, 183
BspANI GGCC 2 cut(s) 310, 717
BspCNI CTCAG 1 cut(s) 599
BspDI ATCGAT 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 154
BspFNI CGCG 3 cut(s) 99, 178, 183
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 637
BspTNI GGTCTC 1 cut(s) 702
BsrI ACTGG 3 cut(s) 139, 453, 461
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 3 cut(s) 123, 151, 594
BssT1I CCWWGG 1 cut(s) 718
Bst4CI ACNGT 3 cut(s) 573, 647, 729
Bst6I CTCTTC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 163, 601
BstDEI CTNAG 1 cut(s) 586
BstEII GGTNACC 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 126, 685
BstFNI CGCG 3 cut(s) 99, 178, 183
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 3 cut(s) 126, 154, 597
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 3 cut(s) 123, 151, 594
BstMCI CGRYCG 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 196
BstUI CGCG 3 cut(s) 99, 178, 183
BstV2I GAAGAC 1 cut(s) 507
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 2 cut(s) 310, 717
BsuTUI ATCGAT 1 cut(s) 150
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 126, 685
BtsIMutI CAGTG 3 cut(s) 351, 569, 725
Cac8I GCNNGC 2 cut(s) 163, 601
CfoI GCGC 1 cut(s) 183
ClaI ATCGAT 1 cut(s) 150
CseI GACGC 1 cut(s) 88
CviAII CATG 1 cut(s) 312
DdeI CTNAG 1 cut(s) 586
DpnI GATC 3 cut(s) 125, 153, 596
DpnII GATC 3 cut(s) 123, 151, 594
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 718
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 702
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 689
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoO65I GGTNACC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 665
EcoT14I CCWWGG 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 1 cut(s) 315
FaiI YATR 9 cut(s) 19, 21, 313, 374, 424, 426, 438, 479, 486
FaqI GGGAC 2 cut(s) 47, 127
FatI CATG 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 78, 179
FokI GGATG 2 cut(s) 113, 672
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 78, 179
GlaI GCGC 1 cut(s) 182
GluI GCNGC 2 cut(s) 78, 179
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 2 cut(s) 310, 717
HapII CCGG 1 cut(s) 155
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 315
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 329, 639
HpaII CCGG 1 cut(s) 155
HphI GGTGA 3 cut(s) 184, 324, 659
Hpy166II GTNNAC 2 cut(s) 455, 725
Hpy188I TCNGA 2 cut(s) 287, 589
Hpy188III TCNNGA 5 cut(s) 121, 155, 213, 562, 679
Hpy8I GTNNAC 2 cut(s) 455, 725
HpyAV CCTTC 3 cut(s) 21, 219, 547
HpyCH4III ACNGT 3 cut(s) 573, 647, 729
HpyCH4IV ACGT 2 cut(s) 248, 383
HpyCH4V TGCA 2 cut(s) 243, 617
HpyF3I CTNAG 1 cut(s) 586
HpySE526I ACGT 2 cut(s) 248, 383
Hsp92II CATG 1 cut(s) 315
HspAI GCGC 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 154
Kzo9I GATC 3 cut(s) 123, 151, 594
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 7 cut(s) 71, 152, 168, 175, 248, 434, 474
MaeII ACGT 2 cut(s) 248, 383
MaeIII GTNAC 2 cut(s) 190, 326
MalI GATC 3 cut(s) 125, 153, 596
MboI GATC 3 cut(s) 123, 151, 594
MboII GAAGA 6 cut(s) 97, 300, 361, 498, 507, 626
MhlI GDGCHC 1 cut(s) 117
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 7 cut(s) 304, 375, 419, 605, 620, 660, 665
MluNI TGGCCA 1 cut(s) 310
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 252
Mox20I TGGCCA 1 cut(s) 310
MroI TCCGGA 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 557
MscI TGGCCA 1 cut(s) 310
MseI TTAA 3 cut(s) 251, 500, 710
Msp20I TGGCCA 1 cut(s) 310
MspI CCGG 1 cut(s) 155
MvnI CGCG 3 cut(s) 99, 178, 183
NdeII GATC 3 cut(s) 123, 151, 594
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 190, 326
NspV TTCGAA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 639
PflFI GACNNNGTC 2 cut(s) 64, 98
PkrI GCNGC 2 cut(s) 79, 180
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 220
PsyI GACNNNGTC 2 cut(s) 64, 98
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 251, 500, 710
SatI GCNGC 2 cut(s) 78, 179
Sau3AI GATC 3 cut(s) 123, 151, 594
SchI GAGTC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 196
SfuI TTCGAA 1 cut(s) 637
Sse9I AATT 7 cut(s) 304, 375, 419, 605, 620, 660, 665
SsiI CCGC 5 cut(s) 75, 78, 97, 178, 183
SstI GAGCTC 1 cut(s) 117
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 3 cut(s) 573, 647, 729
TaiI ACGT 2 cut(s) 251, 386
TaqI TCGA 6 cut(s) 93, 120, 150, 212, 274, 637
TaqII GACCGA 1 cut(s) 178
TasI AATT 7 cut(s) 304, 375, 419, 605, 620, 660, 665
TauI GCSGC 2 cut(s) 80, 181
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 3 cut(s) 251, 500, 710
Tru9I TTAA 3 cut(s) 251, 500, 710
TscAI CASTG 3 cut(s) 351, 576, 732
TseFI GTSAC 2 cut(s) 190, 326
Tsp45I GTSAC 2 cut(s) 190, 326
TspDTI ATGAA 3 cut(s) 159, 498, 507
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 3 cut(s) 351, 576, 732
Tth111I GACNNNGTC 2 cut(s) 64, 98
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 665
XmnI GAANNNNTTC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.