No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 4 - 136 | 4.1e-10 | Plant transposase (Ptta/En/Spm family) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 584 |
| AciI | CCGC | 1 cut(s) | 536 |
| AclI | AACGTT | 1 cut(s) | 58 |
| AclWI | GGATC | 1 cut(s) | 683 |
| AcsI | RAATTY | 2 cut(s) | 297, 321 |
| AcuI | CTGAAG | 2 cut(s) | 701, 716 |
| AfaI | GTAC | 2 cut(s) | 464, 580 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 418 |
| AgsI | TTSAA | 5 cut(s) | 117, 302, 416, 450, 508 |
| AjnI | CCWGG | 1 cut(s) | 801 |
| AluBI | AGCT | 5 cut(s) | 143, 527, 701, 708, 715 |
| AluI | AGCT | 5 cut(s) | 143, 527, 701, 708, 715 |
| Alw21I | GWGCWC | 1 cut(s) | 488 |
| Alw26I | GTCTC | 1 cut(s) | 416 |
| AlwI | GGATC | 1 cut(s) | 683 |
| AoxI | GGCC | 3 cut(s) | 119, 409, 831 |
| ApeKI | GCWGC | 3 cut(s) | 143, 437, 639 |
| ApoI | RAATTY | 2 cut(s) | 297, 321 |
| AspS9I | GGNCC | 1 cut(s) | 832 |
| BanI | GGYRCC | 1 cut(s) | 584 |
| Bbv12I | GWGCWC | 1 cut(s) | 488 |
| BbvI | GCAGC | 3 cut(s) | 130, 424, 651 |
| BccI | CCATC | 2 cut(s) | 493, 569 |
| BceAI | ACGGC | 1 cut(s) | 886 |
| BciT130I | CCWGG | 1 cut(s) | 803 |
| BciVI | GTATCC | 1 cut(s) | 570 |
| BcoDI | GTCTC | 1 cut(s) | 416 |
| BfaI | CTAG | 2 cut(s) | 611, 895 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BfuI | GTATCC | 1 cut(s) | 570 |
| BisI | GCNGC | 4 cut(s) | 144, 438, 537, 640 |
| BlsI | GCNGC | 4 cut(s) | 145, 439, 538, 641 |
| Bme1390I | CCNGG | 1 cut(s) | 803 |
| BmgT120I | GGNCC | 1 cut(s) | 832 |
| BmiI | GGNNCC | 2 cut(s) | 586, 844 |
| BmrFI | CCNGG | 1 cut(s) | 803 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BoxI | GACNNNNGTC | 1 cut(s) | 611 |
| BpmI | CTGGAG | 2 cut(s) | 654, 795 |
| BsaJI | CCNNGG | 3 cut(s) | 694, 802, 838 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 704, 734 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 418 |
| Bse1I | ACTGG | 3 cut(s) | 586, 671, 778 |
| Bse3DI | GCAATG | 1 cut(s) | 850 |
| BseBI | CCWGG | 1 cut(s) | 803 |
| BseDI | CCNNGG | 3 cut(s) | 694, 802, 838 |
| BseGI | GGATG | 1 cut(s) | 268 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BseMI | GCAATG | 1 cut(s) | 850 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseNI | ACTGG | 3 cut(s) | 586, 671, 778 |
| BseRI | GAGGAG | 2 cut(s) | 488, 668 |
| BseXI | GCAGC | 3 cut(s) | 130, 424, 651 |
| BsgI | GTGCAG | 1 cut(s) | 658 |
| BshFI | GGCC | 3 cut(s) | 121, 411, 833 |
| BshNI | GGYRCC | 1 cut(s) | 584 |
| BsiHKAI | GWGCWC | 1 cut(s) | 488 |
| BslFI | GGGAC | 1 cut(s) | 599 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 418 |
| BsmAI | GTCTC | 1 cut(s) | 416 |
| BsmFI | GGGAC | 1 cut(s) | 599 |
| BsnI | GGCC | 3 cut(s) | 121, 411, 833 |
| Bsp1286I | GDGCHC | 1 cut(s) | 488 |
| Bsp143I | GATC | 2 cut(s) | 654, 688 |
| Bsp19I | CCATGG | 1 cut(s) | 838 |
| BspACI | CCGC | 1 cut(s) | 536 |
| BspANI | GGCC | 3 cut(s) | 121, 411, 833 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspHI | TCATGA | 1 cut(s) | 375 |
| BspLI | GGNNCC | 2 cut(s) | 586, 844 |
| BspPI | GGATC | 1 cut(s) | 683 |
| BspT107I | GGYRCC | 1 cut(s) | 584 |
| BsrDI | GCAATG | 1 cut(s) | 850 |
| BsrI | ACTGG | 3 cut(s) | 586, 671, 778 |
| BssECI | CCNNGG | 3 cut(s) | 694, 802, 838 |
| BssMI | GATC | 2 cut(s) | 654, 688 |
| BssT1I | CCWWGG | 2 cut(s) | 694, 838 |
| Bst2UI | CCWGG | 1 cut(s) | 803 |
| Bst6I | CTCTTC | 3 cut(s) | 686, 780, 809 |
| BstC8I | GCNNGC | 1 cut(s) | 857 |
| BstDEI | CTNAG | 3 cut(s) | 75, 528, 651 |
| BstDSI | CCRYGG | 1 cut(s) | 838 |
| BstF5I | GGATG | 1 cut(s) | 268 |
| BstKTI | GATC | 2 cut(s) | 657, 691 |
| BstMAI | GTCTC | 1 cut(s) | 416 |
| BstMBI | GATC | 2 cut(s) | 654, 688 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 533, 542, 856 |
| BstNI | CCWGG | 1 cut(s) | 803 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 611 |
| BstSCI | CCNGG | 1 cut(s) | 801 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstV1I | GCAGC | 3 cut(s) | 130, 424, 651 |
| BsuI | GTATCC | 1 cut(s) | 570 |
| BsuRI | GGCC | 3 cut(s) | 121, 411, 833 |
| BtgI | CCRYGG | 1 cut(s) | 838 |
| BtsCI | GGATG | 1 cut(s) | 268 |
| Cac8I | GCNNGC | 1 cut(s) | 857 |
| CciI | TCATGA | 1 cut(s) | 375 |
| Cfr13I | GGNCC | 1 cut(s) | 832 |
| Csp6I | GTAC | 2 cut(s) | 463, 579 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 88, 123 |
| CviAII | CATG | 5 cut(s) | 193, 222, 376, 839, 847 |
| CviQI | GTAC | 2 cut(s) | 463, 579 |
| DdeI | CTNAG | 3 cut(s) | 75, 528, 651 |
| DpnI | GATC | 2 cut(s) | 656, 690 |
| DpnII | GATC | 2 cut(s) | 654, 688 |
| Eam1104I | CTCTTC | 3 cut(s) | 686, 780, 809 |
| EarI | CTCTTC | 3 cut(s) | 686, 780, 809 |
| Eco130I | CCWWGG | 2 cut(s) | 694, 838 |
| Eco57I | CTGAAG | 2 cut(s) | 701, 716 |
| EcoRII | CCWGG | 1 cut(s) | 801 |
| EcoT14I | CCWWGG | 2 cut(s) | 694, 838 |
| EcoT22I | ATGCAT | 2 cut(s) | 198, 852 |
| ErhI | CCWWGG | 2 cut(s) | 694, 838 |
| FaeI | CATG | 5 cut(s) | 196, 225, 379, 842, 850 |
| FaqI | GGGAC | 1 cut(s) | 599 |
| FatI | CATG | 5 cut(s) | 192, 221, 375, 838, 846 |
| FauNDI | CATATG | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 4 cut(s) | 144, 438, 537, 640 |
| FokI | GGATG | 1 cut(s) | 275 |
| Fsp4HI | GCNGC | 4 cut(s) | 144, 438, 537, 640 |
| FspBI | CTAG | 2 cut(s) | 611, 895 |
| GluI | GCNGC | 4 cut(s) | 144, 438, 537, 640 |
| GsuI | CTGGAG | 2 cut(s) | 654, 795 |
| HaeIII | GGCC | 3 cut(s) | 121, 411, 833 |
| Hin1II | CATG | 5 cut(s) | 196, 225, 379, 842, 850 |
| HincII | GTYRAC | 2 cut(s) | 229, 312 |
| HindII | GTYRAC | 2 cut(s) | 229, 312 |
| HinfI | GANTC | 3 cut(s) | 372, 607, 746 |
| HpaI | GTTAAC | 1 cut(s) | 229 |
| Hpy166II | GTNNAC | 4 cut(s) | 36, 229, 312, 465 |
| Hpy188I | TCNGA | 2 cut(s) | 54, 735 |
| Hpy188III | TCNNGA | 3 cut(s) | 376, 811, 822 |
| Hpy8I | GTNNAC | 4 cut(s) | 36, 229, 312, 465 |
| HpyAV | CCTTC | 5 cut(s) | 148, 268, 373, 422, 607 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 533, 542, 856 |
| HpyF3I | CTNAG | 3 cut(s) | 75, 528, 651 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| Hsp92II | CATG | 5 cut(s) | 196, 225, 379, 842, 850 |
| KspAI | GTTAAC | 1 cut(s) | 229 |
| Kzo9I | GATC | 2 cut(s) | 654, 688 |
| LmnI | GCTCC | 4 cut(s) | 698, 705, 712, 848 |
| LpnPI | CCDG | 8 cut(s) | 567, 684, 759, 788, 796, 807, 815, 815 |
| Lsp1109I | GCAGC | 3 cut(s) | 130, 424, 651 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 2 cut(s) | 611, 895 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 3 cut(s) | 86, 765, 778 |
| MalI | GATC | 2 cut(s) | 656, 690 |
| MboI | GATC | 2 cut(s) | 654, 688 |
| MboII | GAAGA | 8 cut(s) | 438, 508, 520, 527, 673, 676, 797, 826 |
| MfeI | CAATTG | 2 cut(s) | 171, 344 |
| MhlI | GDGCHC | 1 cut(s) | 488 |
| MlyI | GAGTC | 2 cut(s) | 381, 601 |
| MmeI | TCCRAC | 2 cut(s) | 240, 349 |
| MnlI | CCTC | 8 cut(s) | 37, 342, 466, 573, 598, 627, 689, 845 |
| Mph1103I | ATGCAT | 2 cut(s) | 198, 852 |
| MseI | TTAA | 2 cut(s) | 92, 228 |
| MslI | CAYNNNNRTG | 1 cut(s) | 207 |
| MspR9I | CCNGG | 1 cut(s) | 803 |
| MunI | CAATTG | 2 cut(s) | 171, 344 |
| MvaI | CCWGG | 1 cut(s) | 803 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 533, 542, 856 |
| NcoI | CCATGG | 1 cut(s) | 838 |
| NdeI | CATATG | 1 cut(s) | 135 |
| NdeII | GATC | 2 cut(s) | 654, 688 |
| NlaIII | CATG | 5 cut(s) | 196, 225, 379, 842, 850 |
| NlaIV | GGNNCC | 2 cut(s) | 586, 844 |
| NmuCI | GTSAC | 1 cut(s) | 778 |
| NsiI | ATGCAT | 2 cut(s) | 198, 852 |
| PagI | TCATGA | 1 cut(s) | 375 |
| PfeI | GAWTC | 1 cut(s) | 746 |
| PkrI | GCNGC | 4 cut(s) | 145, 439, 538, 641 |
| PleI | GAGTC | 2 cut(s) | 380, 601 |
| PpsI | GAGTC | 2 cut(s) | 380, 601 |
| PshAI | GACNNNNGTC | 1 cut(s) | 611 |
| Psp1406I | AACGTT | 1 cut(s) | 58 |
| Psp6I | CCWGG | 1 cut(s) | 801 |
| PspGI | CCWGG | 1 cut(s) | 801 |
| PspN4I | GGNNCC | 2 cut(s) | 586, 844 |
| PspPI | GGNCC | 1 cut(s) | 832 |
| RsaI | GTAC | 2 cut(s) | 464, 580 |
| RsaNI | GTAC | 2 cut(s) | 463, 579 |
| RseI | CAYNNNNRTG | 1 cut(s) | 207 |
| SaqAI | TTAA | 2 cut(s) | 92, 228 |
| SatI | GCNGC | 4 cut(s) | 144, 438, 537, 640 |
| Sau3AI | GATC | 2 cut(s) | 654, 688 |
| Sau96I | GGNCC | 1 cut(s) | 832 |
| SchI | GAGTC | 2 cut(s) | 381, 601 |
| ScrFI | CCNGG | 1 cut(s) | 803 |
| SduI | GDGCHC | 1 cut(s) | 488 |
| SetI | ASST | 7 cut(s) | 61, 145, 211, 529, 703, 710, 717 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 207 |
| SsiI | CCGC | 1 cut(s) | 536 |
| SspMI | CTAG | 2 cut(s) | 611, 895 |
| StyD4I | CCNGG | 1 cut(s) | 801 |
| StyI | CCWWGG | 2 cut(s) | 694, 838 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 1 cut(s) | 687 |
| TaqII | GACCGA | 1 cut(s) | 797 |
| TatI | WGTACW | 1 cut(s) | 462 |
| TauI | GCSGC | 1 cut(s) | 539 |
| TfiI | GAWTC | 1 cut(s) | 746 |
| Tru1I | TTAA | 2 cut(s) | 92, 228 |
| Tru9I | TTAA | 2 cut(s) | 92, 228 |
| TseFI | GTSAC | 1 cut(s) | 778 |
| TseI | GCWGC | 3 cut(s) | 143, 437, 639 |
| Tsp45I | GTSAC | 1 cut(s) | 778 |
| TspDTI | ATGAA | 3 cut(s) | 249, 279, 392 |
| XapI | RAATTY | 2 cut(s) | 297, 321 |
| XspI | CTAG | 2 cut(s) | 611, 895 |
| Zsp2I | ATGCAT | 2 cut(s) | 198, 852 |