Rh6AG242800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000090
Physical Location & Seq
Forward (+)
43138698 .. 43154495
15798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG242800.1

Sequence Viewer

Length: 726 bp
ATGGAATCACAATTGCCACAAACAAGAGGGAAGAAAATACGAAAGCTTAAGTTCAAACTCCCTCCACCTCCAGAAGTTACAGCAGCTCCTCACCAAACATCTGAAGCTCAACTCACGCCAAATCTGCAACCAACACCGGCACCTCAAAACACATCATCTTCTCAACAAATAGCAAGACCTCAGTCCACGCCAGCTTCTCAACCTATGACAAGGACTCAGCCTACACCGGCTTCTCAACTAACACCAACTCCTCAACCTATTAGATTAGCACATCACCGTGTTCTGGCTCCAGAACCATCTCCACCTTCTCATGCATTTGTGACTACACTGCCTCAAAAGCGAGCAGCTCAGTGCCCCACAAGTTTGGATTCAGCAATAACTCCTCAGCCATCTGATGCTTCTCAATCTCGAGCTTCTCCACCATATCAAGAGATAGCACCTCAGCAATCAGCAACTCAGAATGGAGTCACACTCTTACATGCTACAAAAAGCACAACGAAACGGGAAAAAATGAACAACTCTTTCGAGAGGAGGAGAGCTCTGCTAGGTTTTCTTGGCGGTGCTCTGGCAATTCTGGTTGGAGGGATTGGACATTTTGATCTCTTTGATCAACCTAATGAGGATGGCGGCGGTGGAGAAATCCTTTTGCGTCATGAGTGGGCTTCGACCAGACATGTTCGCGCAACGATCGAGGAAGGAGTTTGGGCTCTAGCTTCTGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

25.96

Weight (kDa)

9.99

Isoelectric Point (pI)

71.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccII CGCG 1 cut(s) 681
AciI CCGC 3 cut(s) 558, 627, 630
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 283
AflII CTTAAG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 673
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 8 cut(s) 46, 86, 107, 194, 347, 413, 539, 713
AluI AGCT 8 cut(s) 46, 86, 107, 194, 347, 413, 539, 713
Alw21I GWGCWC 2 cut(s) 541, 565
Ama87I CYCGRG 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 83, 344
AspLEI GCGC 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 83, 266
AvaI CYCGRG 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 2 cut(s) 541, 709
Bbv12I GWGCWC 2 cut(s) 541, 565
BbvCI CCTCAGC 2 cut(s) 384, 441
BbvI GCAGC 2 cut(s) 95, 356
BccI CCATC 3 cut(s) 304, 397, 617
BclI TGATCA 1 cut(s) 607
BfaI CTAG 2 cut(s) 545, 710
BfrI CTTAAG 1 cut(s) 47
BisI GCNGC 3 cut(s) 84, 345, 628
BlsI GCNGC 3 cut(s) 85, 346, 629
BmeT110I CYCGRG 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 141, 288
BmsI GCATC 1 cut(s) 385
BoxI GACNNNNGTC 1 cut(s) 181
BplI GAGNNNNNCTC 4 cut(s) 456, 488, 523, 555
BpmI CTGGAG 2 cut(s) 54, 273
Bpu10I CCTNAGC 2 cut(s) 384, 441
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 2 cut(s) 136, 226
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 6 cut(s) 194, 230, 362, 398, 455, 470
BseRI GAGGAG 5 cut(s) 78, 240, 372, 544, 547
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 2 cut(s) 95, 356
Bsh1236I CGCG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 2 cut(s) 541, 565
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 2 cut(s) 137, 227
BslI CCNNNNNNNGG 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 4 cut(s) 356, 541, 565, 709
Bsp143I GATC 3 cut(s) 598, 607, 687
BspACI CCGC 3 cut(s) 558, 627, 630
BspCNI CTCAG 6 cut(s) 193, 229, 361, 397, 454, 469
BspFNI CGCG 1 cut(s) 681
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 141, 288
BspT107I GGYRCC 1 cut(s) 139
BspTI CTTAAG 1 cut(s) 47
BsrFI RCCGGY 2 cut(s) 136, 226
BssAI RCCGGY 2 cut(s) 136, 226
BssMI GATC 3 cut(s) 598, 607, 687
Bst4CI ACNGT 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 192, 342
BstDEI CTNAG 6 cut(s) 180, 216, 348, 384, 441, 456
BstF5I GGATG 1 cut(s) 628
BstFNI CGCG 1 cut(s) 681
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 3 cut(s) 601, 610, 690
BstMBI GATC 3 cut(s) 598, 607, 687
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 3 cut(s) 124, 337, 719
BstNSI RCATGY 2 cut(s) 482, 677
BstPAI GACNNNNGTC 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 2 cut(s) 95, 356
BstXI CCANNNNNNTGG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 628
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 326, 356
Cac8I GCNNGC 2 cut(s) 192, 342
CciI TCATGA 1 cut(s) 652
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 2 cut(s) 136, 226
CseI GACGC 1 cut(s) 638
CviAII CATG 5 cut(s) 311, 479, 653, 674, 723
DdeI CTNAG 6 cut(s) 180, 216, 348, 384, 441, 456
DpnI GATC 3 cut(s) 600, 609, 689
DpnII GATC 3 cut(s) 598, 607, 687
Ecl136II GAGCTC 1 cut(s) 539
Eco24I GRGCYC 2 cut(s) 541, 709
Eco53kI GAGCTC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 541, 709
FaeI CATG 5 cut(s) 314, 482, 656, 677, 726
FaiI YATR 7 cut(s) 206, 312, 424, 480, 654, 675, 724
FatI CATG 5 cut(s) 310, 478, 652, 673, 722
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 84, 345, 628
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 2 cut(s) 541, 709
Fsp4HI GCNGC 3 cut(s) 84, 345, 628
FspBI CTAG 2 cut(s) 545, 710
GlaI GCGC 1 cut(s) 682
GluI GCNGC 3 cut(s) 84, 345, 628
GsuI CTGGAG 2 cut(s) 54, 273
HapII CCGG 2 cut(s) 137, 227
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 683
Hin1II CATG 5 cut(s) 314, 482, 656, 677, 726
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 4 cut(s) 5, 214, 368, 465
HpaII CCGG 2 cut(s) 137, 227
HphI GGTGA 2 cut(s) 83, 266
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 103, 394, 459
Hpy188III TCNNGA 6 cut(s) 71, 290, 408, 428, 526, 653
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 315, 689
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 127, 314, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 337, 719
HpyF3I CTNAG 6 cut(s) 180, 216, 348, 384, 441, 456
Hsp92II CATG 5 cut(s) 314, 482, 656, 677, 726
HspAI GCGC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 3 cut(s) 598, 607, 687
LmnI GCTCC 2 cut(s) 91, 292
Lsp1109I GCAGC 2 cut(s) 95, 356
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 545, 710
MaeIII GTNAC 3 cut(s) 76, 319, 466
MalI GATC 3 cut(s) 600, 609, 689
MboI GATC 3 cut(s) 598, 607, 687
MboII GAAGA 2 cut(s) 43, 150
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 4 cut(s) 356, 541, 565, 709
MluCI AATT 2 cut(s) 11, 570
MlyI GAGTC 2 cut(s) 208, 474
MmeI TCCRAC 1 cut(s) 559
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 2 cut(s) 137, 227
MunI CAATTG 1 cut(s) 11
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 3 cut(s) 124, 337, 719
NdeII GATC 3 cut(s) 598, 607, 687
NlaIII CATG 5 cut(s) 314, 482, 656, 677, 726
NlaIV GGNNCC 2 cut(s) 141, 288
NmuCI GTSAC 2 cut(s) 319, 466
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 2 cut(s) 482, 677
PaeR7I CTCGAG 1 cut(s) 408
PagI TCATGA 1 cut(s) 652
PciI ACATGT 1 cut(s) 673
PfeI GAWTC 2 cut(s) 5, 368
PkrI GCNGC 3 cut(s) 85, 346, 629
Ple19I CGATCG 1 cut(s) 690
PleI GAGTC 2 cut(s) 208, 473
PpsI GAGTC 2 cut(s) 208, 473
PscI ACATGT 1 cut(s) 673
PshAI GACNNNNGTC 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 141, 288
PvuI CGATCG 1 cut(s) 690
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 541
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 84, 345, 628
Sau3AI GATC 3 cut(s) 598, 607, 687
SchI GAGTC 2 cut(s) 208, 474
SduI GDGCHC 4 cut(s) 356, 541, 565, 709
SfaNI GCATC 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 408
SlaI CTCGAG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 47, 408
SmoI CTYRAG 2 cut(s) 47, 408
Sse9I AATT 2 cut(s) 11, 570
SsiI CCGC 3 cut(s) 558, 627, 630
SspMI CTAG 2 cut(s) 545, 710
SstI GAGCTC 1 cut(s) 541
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 4 cut(s) 409, 525, 665, 690
TasI AATT 2 cut(s) 11, 570
TauI GCSGC 1 cut(s) 630
TfiI GAWTC 2 cut(s) 5, 368
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 333, 356
TseFI GTSAC 2 cut(s) 319, 466
TseI GCWGC 2 cut(s) 83, 344
Tsp45I GTSAC 2 cut(s) 319, 466
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 2 cut(s) 333, 356
Vha464I CTTAAG 1 cut(s) 47
XceI RCATGY 2 cut(s) 482, 677
XhoI CTCGAG 1 cut(s) 408
XspI CTAG 2 cut(s) 545, 710
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.