RLG00000027945

elongation of fatty acids protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
17074606 .. 17077870
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027945

Sequence Viewer

Length: 750 bp
ATGGGTCAGCCTATGATCCAGACCCTCACGTTCTGGCTCTCGAAGCACCCATCAATAGTCAGGTTCCGATGGTCTCATGCCAGCTCTTGGGGCTCCACATGGTACTTCCTCCTTACTGCCATTGCCCTCTGCCTCCTCTCCGTCCTCCTCCACCTCATTCGCCGCCAGGGTCGACCCGTCCCTCTCGGACCTATCCCCACCTTCCACTCCCTCTTCATAACCCTCCTCTCCTTCACCGTCTTCGTCGGCATCACACTCTCCTCCTCCGCCAAAATCAAAGAAACTAAATGGTTCTGGCAGCACTCCAAAACCCCCTTCCAATGGCTCCTATGCTTCCCCCTCGAGTCGGATCTTCTTCTGATATCCTCTCAATCTCTGCAACTTGGCCGAGGAAAAATGATAAGGAAGCCTGCTACTGCAACAACAAGACCATCCAAATCAGCTTCTCAACTACCATCACAACCAGCACTGAGAGCAACTTCTTATGCAGCACCCACAACAACTGAACTGCCATTTGAAGAGCCACAAGTTGATCAACATCCTACATCTCACAACTCAGATAAAGTGAAGAAGCTTGAATCAACTGTGGACACTATGCGGTCACAAAATGCACAGCTAATGACAATGTTGAAGAAGTTCCTGATGAATAGCCAAGGCTGCTTTGCTAATACAGAAAACATTGACATGAATATTGTAGTACCCAACAGTGAAGAAGATGATGTCTTTGGAAGAAATGAAGACGGTGTCTAA

Protein Analysis

250

Amino Acids

28.08

Weight (kDa)

9.37

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 87
AccI GTMKAC 1 cut(s) 172
AciI CCGC 3 cut(s) 163, 267, 598
AclWI GGATC 2 cut(s) 10, 357
AcoI YGGCCR 1 cut(s) 385
AfaI GTAC 2 cut(s) 104, 699
AfiI CCNNNNNNNGG 3 cut(s) 87, 321, 346
AgsI TTSAA 3 cut(s) 518, 578, 631
AjnI CCWGG 1 cut(s) 165
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 4 cut(s) 84, 443, 574, 616
AluI AGCT 4 cut(s) 84, 443, 574, 616
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 2 cut(s) 10, 357
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 298, 488, 657
Asp700I GAANNNNTTC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 232, 744
BbvI GCAGC 3 cut(s) 310, 500, 644
BccI CCATC 4 cut(s) 58, 63, 439, 463
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 4 cut(s) 163, 299, 489, 658
BlsI GCNGC 4 cut(s) 164, 300, 490, 659
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 65, 94, 326
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 2 cut(s) 232, 744
BsaBI GATNNNNATC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 166, 388, 652
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 321, 346
Bse3DI GCAATG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 166, 388, 652
BseGI GGATG 2 cut(s) 431, 538
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 87, 321, 346
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 461, 570
BseRI GAGGAG 5 cut(s) 125, 137, 215, 250, 253
BseXI GCAGC 3 cut(s) 310, 500, 644
BshFI GGCC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 87, 321, 346
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 78
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 3 cut(s) 15, 349, 532
BspACI CCGC 3 cut(s) 163, 267, 598
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 462, 569
BspLI GGNNCC 3 cut(s) 65, 94, 326
BspPI GGATC 2 cut(s) 10, 357
BspQI GCTCTTC 1 cut(s) 513
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 166, 388, 652
BssMI GATC 3 cut(s) 15, 349, 532
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 4 cut(s) 238, 586, 707, 743
Bst6I CTCTTC 2 cut(s) 218, 513
BstC8I GCNNGC 2 cut(s) 82, 411
BstDEI CTNAG 2 cut(s) 470, 556
BstF5I GGATG 2 cut(s) 431, 538
BstKTI GATC 3 cut(s) 18, 352, 535
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 15, 349, 532
BstMWI GCNNNNNNNGC 4 cut(s) 43, 90, 473, 657
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 310, 500, 644
BstV2I GAAGAC 2 cut(s) 232, 744
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 2 cut(s) 431, 538
BtsIMutI CAGTG 2 cut(s) 467, 712
Cac8I GCNNGC 2 cut(s) 82, 411
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 103, 698
CviAII CATG 3 cut(s) 77, 99, 685
CviQI GTAC 2 cut(s) 103, 698
DdeI CTNAG 2 cut(s) 470, 556
DpnI GATC 3 cut(s) 17, 351, 534
DpnII GATC 3 cut(s) 15, 349, 532
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 218, 513
EarI CTCTTC 2 cut(s) 218, 513
EciI GGCGGA 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 165
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 3 cut(s) 80, 102, 688
FaiI YATR 8 cut(s) 14, 78, 100, 218, 331, 486, 596, 686
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 76, 98, 684
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 163, 299, 489, 658
FokI GGATG 2 cut(s) 418, 525
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 4 cut(s) 163, 299, 489, 658
GluI GCNGC 4 cut(s) 163, 299, 489, 658
HaeIII GGCC 1 cut(s) 387
Hin1II CATG 3 cut(s) 80, 102, 688
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 2 cut(s) 344, 578
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 173, 589
Hpy188I TCNGA 5 cut(s) 68, 188, 349, 360, 559
Hpy188III TCNNGA 3 cut(s) 19, 40, 640
Hpy8I GTNNAC 2 cut(s) 173, 589
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 211, 241, 325
HpyCH4III ACNGT 4 cut(s) 238, 586, 707, 743
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 379, 419, 488, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 90, 473, 657
HpyF3I CTNAG 2 cut(s) 470, 556
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 3 cut(s) 80, 102, 688
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 3 cut(s) 15, 349, 532
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 2 cut(s) 98, 330
Lsp1109I GCAGC 3 cut(s) 310, 500, 644
LweI GCATC 1 cut(s) 258
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 600
MalI GATC 3 cut(s) 17, 351, 534
MboI GATC 3 cut(s) 15, 349, 532
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 95
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 635
MslI CAYNNNNRTG 1 cut(s) 683
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 43, 90, 473, 657
NdeII GATC 3 cut(s) 15, 349, 532
NlaIII CATG 3 cut(s) 80, 102, 688
NlaIV GGNNCC 3 cut(s) 65, 94, 326
NmeAIII GCCGAG 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 600
PaeR7I CTCGAG 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 1 cut(s) 578
PflFI GACNNNGTC 1 cut(s) 743
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 4 cut(s) 164, 300, 490, 659
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 65, 94, 326
PspPI GGNCC 1 cut(s) 188
PspXI VCTCGAGB 1 cut(s) 341
PsuI RGATCY 1 cut(s) 349
PsyI GACNNNGTC 1 cut(s) 743
RsaI GTAC 2 cut(s) 104, 699
RsaNI GTAC 2 cut(s) 103, 698
RseI CAYNNNNRTG 1 cut(s) 683
SalI GTCGAC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 513
SatI GCNGC 4 cut(s) 163, 299, 489, 658
Sau3AI GATC 3 cut(s) 15, 349, 532
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 95
SetI ASST 9 cut(s) 32, 65, 86, 156, 193, 203, 445, 576, 618
SfaNI GCATC 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 341
SinI GGWCC 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SsiI CCGC 3 cut(s) 163, 267, 598
SspI AATATT 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 4 cut(s) 238, 586, 707, 743
TaiI ACGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 41, 172, 342
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 578
TscAI CASTG 2 cut(s) 474, 712
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 3 cut(s) 298, 488, 657
Tsp45I GTSAC 1 cut(s) 600
TspDTI ATGAA 4 cut(s) 205, 659, 701, 750
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 2 cut(s) 474, 712
Tth111I GACNNNGTC 1 cut(s) 743
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.