Rh4BG111300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
18796916 .. 18804509
7594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG111300.1

Sequence Viewer

Length: 522 bp
ATGGCAAATAATGTGTCAGCTACACCTACTGTGCGTGAGAATGTGCTAGCAACACCAACTATGACAAATAATGTGTTAGCCACCCTTACCGTGCGTGAAAATATGCCAGCAACTACTGTTCATGCTCGTGTCAGTCATGTGCGAGCAAGAGCTAACATGCCACCAAGAGCTGATTTGCCGCCACAAACTAACGTGCCACTACCAGCTAACGTGACTCCATCAATTCATCAACTGCCTACCCAACAAGAAATCCCTTTTGTGGGCATTGGCATGAAAAGGAAGCGTGGTAAATCATGTGGTAAAGCTCTTCAAGATCTTATAAAGGCTAATGGTGGACCTCTGCGTGTTGACTTTAATCCAACCATCCATGTCCCTTCTAATGACACAATTTCTAAAATGTTTACTTCTGAGATAGGAATTACTGTTCAGAGTGGGGCACCAGTATGTAAATATGGCTGGTCTGATGTTGATGAAGATGATAAGAGGTTGCTAAGAGAGGATTTGCGGGTGAGTTTATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

18.83

Weight (kDa)

9.56

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 436
AciI CCGC 2 cut(s) 179, 505
AfiI CCNNNNNNNGG 2 cut(s) 259, 260
AgsI TTSAA 1 cut(s) 311
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 5 cut(s) 20, 152, 170, 206, 305
AluI AGCT 5 cut(s) 20, 152, 170, 206, 305
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 520
AsuNHI GCTAGC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 436
BauI CACGAG 1 cut(s) 126
BccI CCATC 2 cut(s) 226, 371
BfaI CTAG 1 cut(s) 47
BglII AGATCT 1 cut(s) 313
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 438
BmtI GCTAGC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 260
Bse1I ACTGG 1 cut(s) 440
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 259, 260
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 436
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 259, 260
BsmFI GGGAC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 2 cut(s) 179, 505
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 438
BspOI GCTAGC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 436
BsrI ACTGG 1 cut(s) 440
BssMI GATC 1 cut(s) 313
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
Bst4CI ACNGT 4 cut(s) 31, 91, 118, 424
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 3 cut(s) 48, 108, 144
BstDEI CTNAG 2 cut(s) 408, 491
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BtsCI GGATG 1 cut(s) 363
Cac8I GCNNGC 3 cut(s) 48, 108, 144
Cfr13I GGNCC 1 cut(s) 335
CviAII CATG 6 cut(s) 122, 137, 157, 271, 294, 368
CviJI RGCY 8 cut(s) 20, 80, 152, 170, 206, 305, 326, 456
CviKI_1 RGCY 8 cut(s) 20, 80, 152, 170, 206, 305, 326, 456
DdeI CTNAG 2 cut(s) 408, 491
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 335
FaeI CATG 6 cut(s) 125, 140, 160, 274, 297, 371
FaqI GGGAC 1 cut(s) 356
FatI CATG 6 cut(s) 121, 136, 156, 270, 293, 367
FauI CCCGC 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 179
Hin1II CATG 6 cut(s) 125, 140, 160, 274, 297, 371
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 214
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 3 cut(s) 335, 349, 402
Hpy188I TCNGA 3 cut(s) 409, 429, 463
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 3 cut(s) 335, 349, 402
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 4 cut(s) 31, 91, 118, 424
HpyCH4IV ACGT 2 cut(s) 192, 210
HpyF3I CTNAG 2 cut(s) 408, 491
HpySE526I ACGT 2 cut(s) 192, 210
Hsp92II CATG 6 cut(s) 125, 140, 160, 274, 297, 371
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 312
LpnPI CCDG 4 cut(s) 120, 216, 442, 453
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 192, 210
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 2 cut(s) 299, 485
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 3 cut(s) 222, 387, 417
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 3 cut(s) 348, 477, 490
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 3 cut(s) 126, 269, 442
NdeII GATC 1 cut(s) 313
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 6 cut(s) 125, 140, 160, 274, 297, 371
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 312
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PsiI TTATAA 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 335
PsuI RGATCY 1 cut(s) 313
RseI CAYNNNNRTG 3 cut(s) 126, 269, 442
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 439
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 3 cut(s) 126, 269, 442
Sse9I AATT 3 cut(s) 222, 387, 417
SsiI CCGC 2 cut(s) 179, 505
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 31, 91, 118, 424
TaiI ACGT 2 cut(s) 195, 213
TasI AATT 3 cut(s) 222, 387, 417
TauI GCSGC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 4 cut(s) 110, 215, 287, 486
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.