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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 2 cut(s) | 19, 149 |
| AflIII | ACRYGT | 1 cut(s) | 495 |
| AgsI | TTSAA | 6 cut(s) | 163, 430, 446, 595, 628, 692 |
| AleI | CACNNNNGTG | 2 cut(s) | 295, 394 |
| AluBI | AGCT | 4 cut(s) | 83, 143, 221, 666 |
| AluI | AGCT | 4 cut(s) | 83, 143, 221, 666 |
| Alw21I | GWGCWC | 1 cut(s) | 302 |
| Alw26I | GTCTC | 1 cut(s) | 538 |
| Alw44I | GTGCAC | 1 cut(s) | 298 |
| Ama87I | CYCGRG | 1 cut(s) | 216 |
| ApaLI | GTGCAC | 1 cut(s) | 298 |
| ApeKI | GCWGC | 1 cut(s) | 140 |
| AseI | ATTAAT | 1 cut(s) | 645 |
| AsuHPI | GGTGA | 1 cut(s) | 62 |
| AvaI | CYCGRG | 1 cut(s) | 216 |
| BaeGI | GKGCMC | 1 cut(s) | 302 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 10, 42 |
| BauI | CACGAG | 1 cut(s) | 392 |
| Bbv12I | GWGCWC | 1 cut(s) | 302 |
| BbvCI | CCTCAGC | 1 cut(s) | 249 |
| BbvI | GCAGC | 1 cut(s) | 152 |
| BccI | CCATC | 3 cut(s) | 100, 205, 677 |
| BcoDI | GTCTC | 1 cut(s) | 538 |
| BfaI | CTAG | 2 cut(s) | 62, 80 |
| BisI | GCNGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 1 cut(s) | 142 |
| BmeT110I | CYCGRG | 1 cut(s) | 216 |
| BmiI | GGNNCC | 1 cut(s) | 337 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| Bpu10I | CCTNAGC | 2 cut(s) | 192, 249 |
| BpuEI | CTTGAG | 1 cut(s) | 657 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 28, 58, 172, 202 |
| Bse118I | RCCGGY | 1 cut(s) | 22 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseMII | CTCAG | 6 cut(s) | 26, 158, 183, 263, 278, 570 |
| BseRI | GAGGAG | 1 cut(s) | 36 |
| BseSI | GKGCMC | 1 cut(s) | 302 |
| BseXI | GCAGC | 1 cut(s) | 152 |
| BsgI | GTGCAG | 1 cut(s) | 470 |
| BsiHKAI | GWGCWC | 1 cut(s) | 302 |
| BsiHKCI | CYCGRG | 1 cut(s) | 216 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BsmAI | GTCTC | 1 cut(s) | 538 |
| BsmI | GAATGC | 2 cut(s) | 400, 589 |
| BsoBI | CYCGRG | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 1 cut(s) | 302 |
| Bsp143I | GATC | 1 cut(s) | 700 |
| BspCNI | CTCAG | 6 cut(s) | 25, 157, 184, 262, 277, 571 |
| BspLI | GGNNCC | 1 cut(s) | 337 |
| BsrFI | RCCGGY | 1 cut(s) | 22 |
| BssAI | RCCGGY | 1 cut(s) | 22 |
| BssMI | GATC | 1 cut(s) | 700 |
| BssSI | CACGAG | 1 cut(s) | 392 |
| Bst2BI | CACGAG | 1 cut(s) | 392 |
| Bst4CI | ACNGT | 2 cut(s) | 74, 434 |
| BstC8I | GCNNGC | 2 cut(s) | 138, 609 |
| BstDEI | CTNAG | 6 cut(s) | 12, 144, 192, 249, 264, 579 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstKTI | GATC | 1 cut(s) | 703 |
| BstMAI | GTCTC | 1 cut(s) | 538 |
| BstMBI | GATC | 1 cut(s) | 700 |
| BstNSI | RCATGY | 1 cut(s) | 499 |
| BstSLI | GKGCMC | 1 cut(s) | 302 |
| BstV1I | GCAGC | 1 cut(s) | 152 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| Cac8I | GCNNGC | 2 cut(s) | 138, 609 |
| Cfr10I | RCCGGY | 1 cut(s) | 22 |
| Csp6I | GTAC | 2 cut(s) | 18, 148 |
| CviAII | CATG | 2 cut(s) | 107, 496 |
| CviJI | RGCY | 8 cut(s) | 26, 83, 143, 196, 221, 466, 533, 666 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 83, 143, 196, 221, 466, 533, 666 |
| CviQI | GTAC | 2 cut(s) | 18, 148 |
| DdeI | CTNAG | 6 cut(s) | 12, 144, 192, 249, 264, 579 |
| DpnI | GATC | 1 cut(s) | 702 |
| DpnII | GATC | 1 cut(s) | 700 |
| Eco88I | CYCGRG | 1 cut(s) | 216 |
| EcoT22I | ATGCAT | 1 cut(s) | 112 |
| FaeI | CATG | 2 cut(s) | 110, 499 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 324, 356 |
| FatI | CATG | 2 cut(s) | 106, 495 |
| Fnu4HI | GCNGC | 1 cut(s) | 141 |
| FokI | GGATG | 1 cut(s) | 518 |
| Fsp4HI | GCNGC | 1 cut(s) | 141 |
| FspBI | CTAG | 2 cut(s) | 62, 80 |
| GluI | GCNGC | 1 cut(s) | 141 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HapII | CCGG | 1 cut(s) | 23 |
| Hin1II | CATG | 2 cut(s) | 110, 499 |
| HinfI | GANTC | 4 cut(s) | 10, 278, 284, 575 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 1 cut(s) | 62 |
| Hpy166II | GTNNAC | 3 cut(s) | 20, 300, 389 |
| Hpy188I | TCNGA | 4 cut(s) | 202, 267, 283, 580 |
| Hpy188III | TCNNGA | 6 cut(s) | 86, 191, 216, 236, 503, 674 |
| Hpy8I | GTNNAC | 3 cut(s) | 20, 300, 389 |
| HpyAV | CCTTC | 4 cut(s) | 111, 137, 449, 686 |
| HpyCH4III | ACNGT | 2 cut(s) | 74, 434 |
| HpyCH4V | TGCA | 5 cut(s) | 110, 179, 300, 451, 587 |
| HpyF3I | CTNAG | 6 cut(s) | 12, 144, 192, 249, 264, 579 |
| Hsp92II | CATG | 2 cut(s) | 110, 499 |
| Kzo9I | GATC | 1 cut(s) | 700 |
| LmnI | GCTCC | 1 cut(s) | 88 |
| LpnPI | CCDG | 6 cut(s) | 36, 99, 204, 437, 480, 488 |
| Lsp1109I | GCAGC | 1 cut(s) | 152 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeI | CTAG | 2 cut(s) | 62, 80 |
| MaeIII | GTNAC | 1 cut(s) | 115 |
| MalI | GATC | 1 cut(s) | 702 |
| MboI | GATC | 1 cut(s) | 700 |
| MboII | GAAGA | 2 cut(s) | 379, 695 |
| MfeI | CAATTG | 1 cut(s) | 324 |
| MhlI | GDGCHC | 1 cut(s) | 302 |
| MluCI | AATT | 5 cut(s) | 324, 371, 484, 623, 646 |
| MlyI | GAGTC | 1 cut(s) | 4 |
| MnlI | CCTC | 5 cut(s) | 57, 258, 266, 356, 523 |
| Mph1103I | ATGCAT | 1 cut(s) | 112 |
| MseI | TTAA | 2 cut(s) | 171, 645 |
| MslI | CAYNNNNRTG | 3 cut(s) | 72, 295, 394 |
| MspI | CCGG | 1 cut(s) | 23 |
| MunI | CAATTG | 1 cut(s) | 324 |
| Mva1269I | GAATGC | 2 cut(s) | 400, 589 |
| NdeII | GATC | 1 cut(s) | 700 |
| NlaIII | CATG | 2 cut(s) | 110, 499 |
| NlaIV | GGNNCC | 1 cut(s) | 337 |
| NmuCI | GTSAC | 1 cut(s) | 115 |
| NsiI | ATGCAT | 1 cut(s) | 112 |
| NspI | RCATGY | 1 cut(s) | 499 |
| OliI | CACNNNNGTG | 2 cut(s) | 295, 394 |
| PaeR7I | CTCGAG | 1 cut(s) | 216 |
| PciI | ACATGT | 1 cut(s) | 495 |
| PctI | GAATGC | 2 cut(s) | 400, 589 |
| PfeI | GAWTC | 3 cut(s) | 278, 284, 575 |
| PkrI | GCNGC | 1 cut(s) | 142 |
| PleI | GAGTC | 1 cut(s) | 4 |
| PpsI | GAGTC | 1 cut(s) | 4 |
| PscI | ACATGT | 1 cut(s) | 495 |
| PshBI | ATTAAT | 1 cut(s) | 645 |
| PspN4I | GGNNCC | 1 cut(s) | 337 |
| RsaI | GTAC | 2 cut(s) | 19, 149 |
| RsaNI | GTAC | 2 cut(s) | 18, 148 |
| RseI | CAYNNNNRTG | 3 cut(s) | 72, 295, 394 |
| SaqAI | TTAA | 2 cut(s) | 171, 645 |
| SatI | GCNGC | 1 cut(s) | 141 |
| Sau3AI | GATC | 1 cut(s) | 700 |
| SchI | GAGTC | 1 cut(s) | 4 |
| SduI | GDGCHC | 1 cut(s) | 302 |
| SetI | ASST | 8 cut(s) | 55, 85, 103, 145, 223, 250, 460, 668 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| Sfr274I | CTCGAG | 1 cut(s) | 216 |
| SlaI | CTCGAG | 1 cut(s) | 216 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 72, 295, 394 |
| SmlI | CTYRAG | 2 cut(s) | 216, 672 |
| SmoI | CTYRAG | 2 cut(s) | 216, 672 |
| Sse9I | AATT | 5 cut(s) | 324, 371, 484, 623, 646 |
| SspI | AATATT | 1 cut(s) | 615 |
| SspMI | CTAG | 2 cut(s) | 62, 80 |
| TaaI | ACNGT | 2 cut(s) | 74, 434 |
| TaqI | TCGA | 1 cut(s) | 217 |
| TasI | AATT | 5 cut(s) | 324, 371, 484, 623, 646 |
| TfiI | GAWTC | 3 cut(s) | 278, 284, 575 |
| Tru1I | TTAA | 2 cut(s) | 171, 645 |
| Tru9I | TTAA | 2 cut(s) | 171, 645 |
| TseFI | GTSAC | 1 cut(s) | 115 |
| TseI | GCWGC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 1 cut(s) | 504 |
| TspGWI | ACGGA | 1 cut(s) | 322 |
| VneI | GTGCAC | 1 cut(s) | 298 |
| VspI | ATTAAT | 1 cut(s) | 645 |
| XceI | RCATGY | 1 cut(s) | 499 |
| XhoI | CTCGAG | 1 cut(s) | 216 |
| XspI | CTAG | 2 cut(s) | 62, 80 |
| Zsp2I | ATGCAT | 1 cut(s) | 112 |