Rorug03G0045700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000090
Physical Location & Seq
Forward (+)
3524608 .. 3527803
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0045700.1

Sequence Viewer

Length: 1968 bp
ATGACGGAAGCCGGAGCGGGTTTTAACCGGGTCCGGGCCGGGTTCCGGGGGCTAATAGAGCTGGCGAAGAAGCTGGAAGGGGAAGATATGAAGCTGCGGCGTGATTTGGAAGCGAAAGCGATGGAGATTGAAGAAGGTAAGAGCCAGCTGAACTTGCTTAAATTAAAGATTGAGGAAAAGAATAGAGAGGTTTGTGATAGAGAGAAGCGGATTGAGGAGCTTGAGAAGATGGTTAGGGTGAATGATGATGTGAAGTTGAGAGTGGAGGAATTGAAGGGTTTAGAGGAGATGATTGCGAAATGTGATGAGGAGGTGAGGTTGAAGAAGGGGAGGATTAGTTTGATTCAGAAATCGATGATGCAATGCTCGTATACGTTGGAAGCGAGGGAGGAGAAGATGAGGGAGAGTAATGTGGCTTTTGGTTTGGTGAAGAAGGCTATGGAGGAGTGGTGCTGTAAAGTTGAGATGAAGGAGAGGGAGCTGGAGAGGTGTGTGGCGAAACTGGAATTGAAAGAAGAAGAAGTGGAGAAGAAAATTGAGGAACTTGAGTTGATTGAGAAGAGGGTCAAGGATTGCCTGGATGATGTGGAGTTGAAAGTTGAGCATTCTGATGCAGTTGAAAAATTGATACAGGAAGGGAGACAGCAGTTGGATGCACTGCAAGAGTCGGTGCGTGAGGGCGAAAGGAATTTGGATTCAGTTCGAAAGGCAGCAGAGGAGCGTGAGAAGGTTTTGGACTCGGTAGGCCAGGGACTTGAAATGAAAGAGAGGGAACTTGAACAGCAGGCCAATGAGCTTGAGTTTAAAGAGAGACAAGTTGAATTGAGAGTTGAGGAAGTTAATTCAAAGGATAAGAGGGTCAATGAACGCCTCAATGAGGTTCAAATGAAGGAAATTTTTTTGGAATTATTTGAAAAATCAATACAAGAAGACAAAGAGCATTTGGATTTGGTCCAAAAGTTGGCAGCAGAGCGTGAAAAGCAGTCAGATTCACTCCAAACATCGGTGCAAGATCGTGAAAATAATTTGTTTTCACTTCAAAAATCGGTACAAGAGCGTGAAAAAAAGTTGGATTCACTATCCGATGGACTTCAAAGGAGAGAAAGGGAACTTGAAAAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTGGATTCTCGAAGGAAGGCCAAGCATTTGGAACCTACCCCTGTTGCTAAAAATGCAAGTGTTGTTTCATCTACAAGTGATCAGTCCTGGATCAACATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGTGGAAAAAATTGACTTGACAGGTAGCCGAATGTCAGCTGTTCTACAAGCATCATCAGACCCGGCAAAATTGGTTTTGGATGCAATGCAAGGGTTTTATCCGTCAAATCTTACTGTGGAAAACAGAGAGTTTGAGTCACAATTGAGGGTCATAAGAAAGAGTTGTATTCTTTTGCTACAGGAGTTAAAGAGAATGTCACCACTAATTAATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGCTGATTGGAAAGAGAAGATGGCAGTTACCGCTGATAATAGTTGGGAGGCTTTGGGCTTTTTGCGGCTTATCACTACGTATGAATTGATAAGTATTTATGATTTGAGGGAGCTTCGAAGTCTTCTTGCTATGGTTTCTCAGCCAGAACAAGCTGCTGAATTAAGTAGGGCACTTGGTATCACAGATAAGGCACCTGGGACGAATGTTGTTTCTTCCATTGTCAAGACTGAGCGATCAGAATCTTCGCTGGCTAGAAATGAAGCAACTCTTTCTCCTCCGAATAAATATTTACAGAATGAAAGGATTGTTTCTCTTCCTTCCATTGCCAAGACTGAGGGACCCAAATCTTTTGGGGCTAGATTTGCAGCAACTCTTTCTTCACCAAATAATGCTGAGGGACCAGAATCTTCGCTGGCTAGAAATGAAGCAACTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

655

Amino Acids

75.11

Weight (kDa)

5.28

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 411 - 586 4e-35 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1720
AccB7I CCANNNNNTGG 1 cut(s) 961
AccBSI CCGCTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 371
AciI CCGC 5 cut(s) 17, 97, 208, 1560, 1594
AclWI GGATC 1 cut(s) 1250
AcsI RAATTY 2 cut(s) 688, 894
AfaI GTAC 1 cut(s) 1050
AfiI CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
AjnI CCWGG 4 cut(s) 576, 747, 1238, 1723
Alw26I GTCTC 2 cut(s) 634, 805
AlwI GGATC 1 cut(s) 1250
AoxI GGCC 5 cut(s) 36, 745, 786, 1122, 1170
ApeKI GCWGC 6 cut(s) 94, 710, 965, 1529, 1682, 1895
ApoI RAATTY 2 cut(s) 688, 894
AseI ATTAAT 1 cut(s) 1494
AspS9I GGNCC 5 cut(s) 31, 36, 952, 1868, 1928
AsuC2I CCSGG 5 cut(s) 29, 35, 40, 47, 1349
AsuHPI GGTGA 6 cut(s) 250, 325, 439, 1476, 1516, 1902
AsuII TTCGAA 2 cut(s) 703, 1645
AvaII GGWCC 4 cut(s) 31, 952, 1868, 1928
AxyI CCTNAGG 1 cut(s) 1500
BaeGI GKGCMC 1 cut(s) 1702
BanI GGYRCC 1 cut(s) 1720
BbsI GAAGAC 2 cut(s) 936, 1643
BbvCI CCTCAGC 1 cut(s) 1923
BbvI GCAGC 6 cut(s) 81, 722, 977, 1541, 1669, 1907
BccI CCATC 5 cut(s) 115, 223, 1079, 1247, 1543
BciT130I CCWGG 4 cut(s) 578, 749, 1240, 1725
BclI TGATCA 1 cut(s) 1231
BcnI CCSGG 5 cut(s) 29, 35, 40, 47, 1349
BcoDI GTCTC 2 cut(s) 634, 805
BfaI CTAG 3 cut(s) 1782, 1887, 1947
BfmI CTRYAG 1 cut(s) 1463
BisI GCNGC 8 cut(s) 95, 98, 711, 966, 1530, 1595, 1683, 1896
BlsI GCNGC 8 cut(s) 96, 99, 712, 967, 1531, 1596, 1684, 1897
Bme1390I CCNGG 9 cut(s) 29, 35, 40, 47, 578, 749, 1240, 1349, 1725
Bme18I GGWCC 4 cut(s) 31, 952, 1868, 1928
BmgT120I GGNCC 5 cut(s) 31, 36, 952, 1868, 1928
BmiI GGNNCC 7 cut(s) 32, 44, 1185, 1722, 1869, 1870, 1929
BmrFI CCNGG 9 cut(s) 29, 35, 40, 47, 578, 749, 1240, 1349, 1725
BmsI GCATC 5 cut(s) 348, 601, 643, 1346, 1357
BpiI GAAGAC 2 cut(s) 936, 1643
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 1923
Bpu14I TTCGAA 2 cut(s) 703, 1645
BpuEI CTTGAG 3 cut(s) 242, 566, 818
BpuMI CCSGG 5 cut(s) 29, 35, 40, 47, 1349
Bsa29I ATCGAT 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 1608
BsaBI GATNNNNATC 1 cut(s) 1768
BsaJI CCNNGG 3 cut(s) 46, 748, 1724
BsaXI ACNNNNNCTCC 8 cut(s) 302, 322, 332, 352, 434, 464, 1786, 1816
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
Bse1I ACTGG 1 cut(s) 507
Bse21I CCTNAGG 1 cut(s) 1500
Bse3DI GCAATG 3 cut(s) 368, 1377, 1851
Bse8I GATNNNNATC 1 cut(s) 1768
BseBI CCWGG 4 cut(s) 578, 749, 1240, 1725
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 46, 748, 1724
BseGI GGATG 4 cut(s) 586, 658, 1258, 1372
BseJI GATNNNNATC 1 cut(s) 1768
BseLI CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
BseMI GCAATG 3 cut(s) 368, 1377, 1851
BseMII CTCAG 5 cut(s) 1514, 1682, 1749, 1854, 1914
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 7 cut(s) 230, 299, 323, 404, 458, 731, 1794
BseSI GKGCMC 1 cut(s) 1702
BseXI GCAGC 6 cut(s) 81, 722, 977, 1541, 1669, 1907
BshFI GGCC 5 cut(s) 38, 747, 788, 1124, 1172
BshNI GGYRCC 1 cut(s) 1720
BshVI ATCGAT 1 cut(s) 353
BsiSI CCGG 6 cut(s) 12, 28, 34, 39, 46, 1349
BslFI GGGAC 4 cut(s) 765, 1741, 1881, 1941
BslI CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
BsmAI GTCTC 2 cut(s) 634, 805
BsmFI GGGAC 4 cut(s) 765, 1741, 1881, 1941
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 5 cut(s) 38, 747, 788, 1124, 1172
Bsp119I TTCGAA 2 cut(s) 703, 1645
Bsp1286I GDGCHC 1 cut(s) 1702
Bsp143I GATC 4 cut(s) 1012, 1231, 1242, 1763
BspACI CCGC 5 cut(s) 17, 97, 208, 1560, 1594
BspANI GGCC 5 cut(s) 38, 747, 788, 1124, 1172
BspCNI CTCAG 5 cut(s) 1513, 1681, 1750, 1855, 1915
BspDI ATCGAT 1 cut(s) 353
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 7 cut(s) 32, 44, 1185, 1722, 1869, 1870, 1929
BspPI GGATC 1 cut(s) 1250
BspT104I TTCGAA 2 cut(s) 703, 1645
BspT107I GGYRCC 1 cut(s) 1720
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 3 cut(s) 368, 1377, 1851
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 3 cut(s) 46, 748, 1724
BssMI GATC 4 cut(s) 1012, 1231, 1242, 1763
BssNAI GTATAC 1 cut(s) 372
Bst1107I GTATAC 1 cut(s) 372
Bst2UI CCWGG 4 cut(s) 578, 749, 1240, 1725
Bst4CI ACNGT 2 cut(s) 1269, 1402
Bst6I CTCTTC 2 cut(s) 554, 1848
BstBAI YACGTR 1 cut(s) 1608
BstBI TTCGAA 2 cut(s) 703, 1645
BstC8I GCNNGC 6 cut(s) 63, 146, 786, 1122, 1779, 1944
BstDEI CTNAG 5 cut(s) 1500, 1668, 1758, 1863, 1923
BstENI CCTNNNNNAGG 1 cut(s) 875
BstF5I GGATG 4 cut(s) 586, 658, 1258, 1372
BstKTI GATC 4 cut(s) 1015, 1234, 1245, 1766
BstMAI GTCTC 2 cut(s) 634, 805
BstMBI GATC 4 cut(s) 1012, 1231, 1242, 1763
BstMWI GCNNNNNNNGC 6 cut(s) 58, 154, 979, 1205, 1559, 1892
BstNI CCWGG 4 cut(s) 578, 749, 1240, 1725
BstSCI CCNGG 9 cut(s) 27, 33, 38, 45, 576, 747, 1238, 1347, 1723
BstSFI CTRYAG 1 cut(s) 1463
BstSLI GKGCMC 1 cut(s) 1702
BstSNI TACGTA 1 cut(s) 1608
BstV1I GCAGC 6 cut(s) 81, 722, 977, 1541, 1669, 1907
BstV2I GAAGAC 2 cut(s) 936, 1643
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstZ17I GTATAC 1 cut(s) 372
Bsu15I ATCGAT 1 cut(s) 353
Bsu36I CCTNAGG 1 cut(s) 1500
BsuRI GGCC 5 cut(s) 38, 747, 788, 1124, 1172
BsuTUI ATCGAT 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 4 cut(s) 586, 658, 1258, 1372
BtsI GCAGTG 2 cut(s) 656, 1524
BtsIMutI CAGTG 2 cut(s) 656, 1524
Cac8I GCNNGC 6 cut(s) 63, 146, 786, 1122, 1779, 1944
CciI TCATGA 1 cut(s) 1275
Cfr13I GGNCC 5 cut(s) 31, 36, 952, 1868, 1928
ClaI ATCGAT 1 cut(s) 353
Csp6I GTAC 1 cut(s) 1049
CviAII CATG 2 cut(s) 1249, 1276
CviQI GTAC 1 cut(s) 1049
DdeI CTNAG 5 cut(s) 1500, 1668, 1758, 1863, 1923
DpnI GATC 4 cut(s) 1014, 1233, 1244, 1765
DpnII GATC 4 cut(s) 1012, 1231, 1242, 1763
DraI TTTAAA 1 cut(s) 805
Eam1104I CTCTTC 2 cut(s) 554, 1848
EarI CTCTTC 2 cut(s) 554, 1848
Eco105I TACGTA 1 cut(s) 1608
Eco47I GGWCC 4 cut(s) 31, 952, 1868, 1928
Eco81I CCTNAGG 1 cut(s) 1500
EcoNI CCTNNNNNAGG 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 1868
EcoRII CCWGG 4 cut(s) 576, 747, 1238, 1723
FaeI CATG 2 cut(s) 1252, 1279
FaiI YATR 9 cut(s) 89, 372, 440, 1250, 1277, 1439, 1611, 1629, 1661
FalI AAGNNNNNCTT 2 cut(s) 1782, 1814
FaqI GGGAC 4 cut(s) 765, 1741, 1881, 1941
FatI CATG 2 cut(s) 1248, 1275
FauI CCCGC 1 cut(s) 10
FbaI TGATCA 1 cut(s) 1231
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 8 cut(s) 95, 98, 711, 966, 1530, 1595, 1683, 1896
FokI GGATG 4 cut(s) 593, 665, 1265, 1379
Fsp4HI GCNGC 8 cut(s) 95, 98, 711, 966, 1530, 1595, 1683, 1896
FspBI CTAG 3 cut(s) 1782, 1887, 1947
GluI GCNGC 8 cut(s) 95, 98, 711, 966, 1530, 1595, 1683, 1896
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 5 cut(s) 38, 747, 788, 1124, 1172
HapII CCGG 6 cut(s) 12, 28, 34, 39, 46, 1349
Hin1II CATG 2 cut(s) 1252, 1279
HindIII AAGCTT 1 cut(s) 1261
HpaII CCGG 6 cut(s) 12, 28, 34, 39, 46, 1349
HphI GGTGA 6 cut(s) 250, 325, 439, 1476, 1516, 1902
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 7 cut(s) 348, 610, 988, 1084, 1345, 1768, 1809
Hpy188III TCNNGA 4 cut(s) 1016, 1161, 1276, 1753
Hpy8I GTNNAC 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 1269, 1402
HpyCH4IV ACGT 2 cut(s) 374, 1607
HpyCH4V TGCA 9 cut(s) 361, 614, 656, 661, 1009, 1208, 1370, 1375, 1895
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 154, 979, 1205, 1559, 1892
HpyF3I CTNAG 5 cut(s) 1500, 1668, 1758, 1863, 1923
HpySE526I ACGT 2 cut(s) 374, 1607
Hsp92II CATG 2 cut(s) 1252, 1279
KflI GGGWCCC 1 cut(s) 1868
Ksp22I TGATCA 1 cut(s) 1231
Kzo9I GATC 4 cut(s) 1012, 1231, 1242, 1763
LmnI GCTCC 5 cut(s) 14, 217, 478, 718, 1639
Lsp1109I GCAGC 6 cut(s) 81, 722, 977, 1541, 1669, 1907
LweI GCATC 5 cut(s) 348, 601, 643, 1346, 1357
MaeI CTAG 3 cut(s) 1782, 1887, 1947
MaeII ACGT 2 cut(s) 374, 1607
MaeIII GTNAC 3 cut(s) 1422, 1482, 1555
MalI GATC 4 cut(s) 1014, 1233, 1244, 1765
MbiI CCGCTC 1 cut(s) 17
MboI GATC 4 cut(s) 1012, 1231, 1242, 1763
MfeI CAATTG 2 cut(s) 1151, 1427
MhlI GDGCHC 1 cut(s) 1702
MlyI GAGTC 3 cut(s) 674, 731, 1430
MmeI TCCRAC 3 cut(s) 357, 630, 1050
MseI TTAA 8 cut(s) 24, 159, 164, 804, 840, 1472, 1494, 1691
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 4 cut(s) 148, 1325, 1532, 1562
MspI CCGG 6 cut(s) 12, 28, 34, 39, 46, 1349
MspR9I CCNGG 9 cut(s) 29, 35, 40, 47, 578, 749, 1240, 1349, 1725
MunI CAATTG 2 cut(s) 1151, 1427
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 4 cut(s) 578, 749, 1240, 1725
MwoI GCNNNNNNNGC 6 cut(s) 58, 154, 979, 1205, 1559, 1892
NciI CCSGG 5 cut(s) 29, 35, 40, 47, 1349
NdeII GATC 4 cut(s) 1012, 1231, 1242, 1763
NlaIII CATG 2 cut(s) 1252, 1279
NlaIV GGNNCC 7 cut(s) 32, 44, 1185, 1722, 1869, 1870, 1929
NmuCI GTSAC 2 cut(s) 1422, 1482
NspV TTCGAA 2 cut(s) 703, 1645
PagI TCATGA 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 7 cut(s) 343, 695, 989, 1073, 1157, 1769, 1934
PflMI CCANNNNNTGG 1 cut(s) 961
PfoI TCCNGGA 1 cut(s) 1238
PkrI GCNGC 8 cut(s) 96, 99, 712, 967, 1531, 1596, 1684, 1897
PleI GAGTC 3 cut(s) 673, 731, 1429
PpsI GAGTC 3 cut(s) 673, 731, 1429
Ppu21I YACGTR 1 cut(s) 1608
PpuMI RGGWCCY 1 cut(s) 1868
PshBI ATTAAT 1 cut(s) 1494
Psp5II RGGWCCY 1 cut(s) 1868
Psp6I CCWGG 4 cut(s) 576, 747, 1238, 1723
PspGI CCWGG 4 cut(s) 576, 747, 1238, 1723
PspN4I GGNNCC 7 cut(s) 32, 44, 1185, 1722, 1869, 1870, 1929
PspPI GGNCC 5 cut(s) 31, 36, 952, 1868, 1928
PspPPI RGGWCCY 1 cut(s) 1868
PvuII CAGCTG 3 cut(s) 148, 1325, 1532
RsaI GTAC 1 cut(s) 1050
RsaNI GTAC 1 cut(s) 1049
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 8 cut(s) 24, 159, 164, 804, 840, 1472, 1494, 1691
SatI GCNGC 8 cut(s) 95, 98, 711, 966, 1530, 1595, 1683, 1896
Sau3AI GATC 4 cut(s) 1012, 1231, 1242, 1763
Sau96I GGNCC 5 cut(s) 31, 36, 952, 1868, 1928
SchI GAGTC 3 cut(s) 674, 731, 1430
ScrFI CCNGG 9 cut(s) 29, 35, 40, 47, 578, 749, 1240, 1349, 1725
SduI GDGCHC 1 cut(s) 1702
SfaNI GCATC 5 cut(s) 348, 601, 643, 1346, 1357
SfcI CTRYAG 1 cut(s) 1463
SfuI TTCGAA 2 cut(s) 703, 1645
SinI GGWCC 4 cut(s) 31, 952, 1868, 1928
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 3 cut(s) 221, 545, 797
SmoI CTYRAG 3 cut(s) 221, 545, 797
SnaBI TACGTA 1 cut(s) 1608
SsiI CCGC 5 cut(s) 17, 97, 208, 1560, 1594
SspI AATATT 1 cut(s) 1817
SspMI CTAG 3 cut(s) 1782, 1887, 1947
StyD4I CCNGG 9 cut(s) 27, 33, 38, 45, 576, 747, 1238, 1347, 1723
TaaI ACNGT 2 cut(s) 1269, 1402
TaiI ACGT 2 cut(s) 377, 1610
TaqI TCGA 4 cut(s) 353, 703, 1162, 1645
TauI GCSGC 2 cut(s) 100, 1597
TfiI GAWTC 7 cut(s) 343, 695, 989, 1073, 1157, 1769, 1934
Tru1I TTAA 8 cut(s) 24, 159, 164, 804, 840, 1472, 1494, 1691
Tru9I TTAA 8 cut(s) 24, 159, 164, 804, 840, 1472, 1494, 1691
TscAI CASTG 2 cut(s) 663, 1524
TseFI GTSAC 2 cut(s) 1422, 1482
TseI GCWGC 6 cut(s) 94, 710, 965, 1529, 1682, 1895
Tsp45I GTSAC 2 cut(s) 1422, 1482
TspGWI ACGGA 2 cut(s) 20, 1377
TspRI CASTG 2 cut(s) 663, 1524
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 4 cut(s) 31, 952, 1868, 1928
VspI ATTAAT 1 cut(s) 1494
XagI CCTNNNNNAGG 1 cut(s) 875
XapI RAATTY 2 cut(s) 688, 894
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 3 cut(s) 1782, 1887, 1947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.