Rw1G028030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000090
Physical Location & Seq
Forward (+)
55539424 .. 55541323
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028030.1

Sequence Viewer

Length: 1029 bp
ATGATTGAGATGATTGCTAGCAATGGCAACAAGAAGGTGGAGATAATATTTGACCAGGAGCATTGGGTCCCAAATACTGAGTACAGCAATAAGAAGTTCACCACCGCTATAGGGATTGAGGTTCGAAGTCGAGCTCCGGTACACTTTGACGTGGAAATAGAACATCCAAAAATTATCTATTTTGTGGATGATAAGATGCGCTCGGCGTATACTCAATTCAAGTGGAAGTTGCACGATCACTACCAAAAATGTGGCACATCTGTTCGAGGACGAGCCACACTTCCTCCACCTGATCTATGGGGTGAGAGATCGACAGAGGAGTGGCATTGGCTATGTGATGAACTCTACACCGATCCAAAATATATTGATAAATGCAAGAAGAATTCAACTAGCCGAAAGAGACAAAGGAGTACGCATCGTGGCGGAGCTATGCCTTTCATTCAACATGCTTTGAGGACAGCCAAGGAGGGCAATCCTTTGTCTTTCATAGACAATTGGGCAGCTATGTATCAAGATTCAAATAGCAATTGGGTTAGTGATGCTACACATGATAAATATGATCGACTGAAAAATAAGAGAGAAGAGCATAAGGAGAAACTAACCCTAGAGGCACCAGAGGGTACTCCACCAGAATCTGTACAAGTTACTGCCCGTGATGAGATTCCAATCATGGCTGAAGAGTGTGGAAGGAAGGGAAAAAGAGTTCGTGGTTTAGGCTCGTTTCCTCGCATGGAGCTTCCAACTGTTACATCCTCAACAGCTGTGAGTTCTGAGATGAACGTAATGCAAGATAAAGTTAAGAAGCTTGAATCAACTGTGGACACTATGCGGTCACAAAATGCACAACTAATGACAATGTTGAAGAAGTTCCTGATGAATAGCCAAGACTGTTTTGCTGATACAGAAAACATTGACATGAATATCGTAGTACCCAACAGTGAAGAAGATGATGTCTTTGGAAGAGATGAAGACGGTGTCCAAAACAATGGAGATAATTCTGAAACAGAGGATTTGGAGGAAGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

342

Amino Acids

39.42

Weight (kDa)

5.42

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 107 - 243 1.5e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 209
AciI CCGC 3 cut(s) 105, 423, 829
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 696
AfaI GTAC 6 cut(s) 83, 141, 412, 622, 639, 930
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 6 cut(s) 220, 387, 443, 519, 809, 862
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 54
AloI GAACNNNNNNTCC 2 cut(s) 687, 719
AluBI AGCT 6 cut(s) 134, 428, 503, 736, 761, 805
AluI AGCT 6 cut(s) 134, 428, 503, 736, 761, 805
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 1 cut(s) 347
AlwNI CAGNNNCTG 1 cut(s) 635
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 1 cut(s) 382
Asp700I GAANNNNTTC 1 cut(s) 866
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 91, 314
AsuII TTCGAA 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 512
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 18, 390, 605
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 68, 69, 612
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 186, 424, 529
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 665
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 3 cut(s) 163, 193, 749
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 69, 762
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 512
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 5 cut(s) 235, 292, 308, 352, 559
BspACI CCGC 3 cut(s) 105, 423, 829
BspCNI CTCAG 2 cut(s) 70, 763
BspLI GGNNCC 3 cut(s) 68, 69, 612
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 1 cut(s) 576
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 5 cut(s) 235, 292, 308, 352, 559
BssNAI GTATAC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 462
Bst1107I GTATAC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 5 cut(s) 745, 817, 890, 938, 974
Bst6I CTCTTC 3 cut(s) 576, 672, 955
BstAUI TGTACA 1 cut(s) 637
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 78, 771
BstF5I GGATG 3 cut(s) 163, 193, 749
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 238, 295, 311, 355, 562
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 5 cut(s) 235, 292, 308, 352, 559
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 512
BstV2I GAAGAC 1 cut(s) 975
BstXI CCANNNNNNTGG 2 cut(s) 251, 986
BstZ17I GTATAC 1 cut(s) 210
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 3 cut(s) 163, 193, 749
BtsIMutI CAGTG 1 cut(s) 943
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 6 cut(s) 82, 140, 411, 621, 638, 929
CspCI CAANNNNNGTGG 2 cut(s) 203, 238
CviAII CATG 5 cut(s) 446, 548, 670, 730, 916
CviQI GTAC 6 cut(s) 82, 140, 411, 621, 638, 929
DdeI CTNAG 2 cut(s) 78, 771
DpnI GATC 5 cut(s) 237, 294, 310, 354, 561
DpnII GATC 5 cut(s) 235, 292, 308, 352, 559
Eam1104I CTCTTC 3 cut(s) 576, 672, 955
EarI CTCTTC 3 cut(s) 576, 672, 955
EciI GGCGGA 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 5 cut(s) 449, 551, 673, 733, 919
FaqI GGGAC 1 cut(s) 53
FatI CATG 5 cut(s) 445, 547, 669, 729, 915
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 3 cut(s) 150, 200, 736
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 3 cut(s) 18, 390, 605
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 501
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 201
Hin1II CATG 5 cut(s) 449, 551, 673, 733, 919
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 4 cut(s) 515, 632, 661, 809
HpaII CCGG 1 cut(s) 137
HphI GGTGA 2 cut(s) 91, 314
Hpy166II GTNNAC 4 cut(s) 99, 142, 210, 820
Hpy188I TCNGA 2 cut(s) 772, 1000
Hpy188III TCNNGA 2 cut(s) 512, 871
Hpy8I GTNNAC 4 cut(s) 99, 142, 210, 820
HpyAV CCTTC 3 cut(s) 28, 681, 685
HpyCH4III ACNGT 5 cut(s) 745, 817, 890, 938, 974
HpyCH4IV ACGT 2 cut(s) 150, 780
HpyCH4V TGCA 4 cut(s) 232, 375, 787, 842
HpyF3I CTNAG 2 cut(s) 78, 771
HpySE526I ACGT 2 cut(s) 150, 780
Hsp92II CATG 5 cut(s) 449, 551, 673, 733, 919
HspAI GCGC 1 cut(s) 199
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 5 cut(s) 235, 292, 308, 352, 559
LguI GCTCTTC 1 cut(s) 576
LmnI GCTCC 4 cut(s) 58, 139, 425, 733
LpnPI CCDG 7 cut(s) 41, 68, 150, 303, 627, 642, 884
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 3 cut(s) 186, 424, 529
MaeI CTAG 3 cut(s) 18, 390, 605
MaeII ACGT 2 cut(s) 150, 780
MaeIII GTNAC 3 cut(s) 643, 745, 831
MalI GATC 5 cut(s) 237, 294, 310, 354, 561
MboI GATC 5 cut(s) 235, 292, 308, 352, 559
MboII GAAGA 8 cut(s) 391, 593, 689, 874, 953, 956, 972, 980
MfeI CAATTG 2 cut(s) 493, 526
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 6 cut(s) 171, 215, 382, 493, 526, 994
MmeI TCCRAC 1 cut(s) 764
MroXI GAANNNNTTC 1 cut(s) 866
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 56
MunI CAATTG 2 cut(s) 493, 526
MvaI CCWGG 1 cut(s) 56
NdeII GATC 5 cut(s) 235, 292, 308, 352, 559
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 5 cut(s) 449, 551, 673, 733, 919
NlaIV GGNNCC 3 cut(s) 68, 69, 612
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 831
NspI RCATGY 1 cut(s) 449
NspV TTCGAA 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 576
PdmI GAANNNNTTC 1 cut(s) 866
PfeI GAWTC 4 cut(s) 515, 632, 661, 809
PflFI GACNNNGTC 1 cut(s) 974
PkrI GCNGC 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 68, 69, 612
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 635
PsyI GACNNNGTC 1 cut(s) 974
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 6 cut(s) 83, 141, 412, 622, 639, 930
RsaNI GTAC 6 cut(s) 82, 140, 411, 621, 638, 929
RseI CAYNNNNRTG 1 cut(s) 914
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 5 cut(s) 235, 292, 308, 352, 559
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 3 cut(s) 186, 424, 529
SfcI CTRYAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 124
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 914
Sse9I AATT 6 cut(s) 171, 215, 382, 493, 526, 994
SsiI CCGC 3 cut(s) 105, 423, 829
SspI AATATT 1 cut(s) 48
SspMI CTAG 3 cut(s) 18, 390, 605
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 5 cut(s) 745, 817, 890, 938, 974
TaiI ACGT 2 cut(s) 153, 783
TaqI TCGA 5 cut(s) 124, 130, 265, 311, 562
TasI AATT 6 cut(s) 171, 215, 382, 493, 526, 994
TatI WGTACW 2 cut(s) 81, 637
TfiI GAWTC 4 cut(s) 515, 632, 661, 809
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 831
TspDTI ATGAA 7 cut(s) 354, 427, 475, 791, 890, 932, 981
TspRI CASTG 1 cut(s) 943
Tth111I GACNNNGTC 1 cut(s) 974
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 382
XceI RCATGY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 866
XspI CTAG 3 cut(s) 18, 390, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.