RchiOBHm_Chr4g0403221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000090
Physical Location & Seq
Forward (+)
22260873 .. 22264794
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37498

Sequence Viewer

Length: 834 bp
ATGCGCTCGGCGTATACTCAATTCAAGTGGAAGTTGCACGATCACTATCAAAAATGTGGCACATCTGTTCGGGGACGAGCCACACTTCCTCCACCTGATCTATGGGGTGAGAGATCGACAGAGGAGTGGCATTGGCTATGTGATGAACTCTACACCGATCCAAAATATATTGATAAATGCAAGAAGAATTCAACTAGCCGAAAGAGACAAAGGACTACGCATCGTGGCGGAGCTATGCCTTTCATTCAACATGCTTTGAGGACAGCCAAGGAGGGCAATCCTTTGTCTTTCATAGACAATTGGGCAGCTATGTATCAAGATTCAAATAGCAATTGGGTTAGTGATGCTGCACGTGATAAATATGATCGACTGAAAAATAAGAGAGAAGAGCATAAGGAGAAACTAACCCTAGAGGCACCAGAGGGTACTCCACCAGAATCTGTACAAGTTACTGCGCGTGATGAGATTCCAATCATGGCTGAAGAGTGTGGAAGGAAGGGAAAAAGAGTTCGTGGTTTAGGCTCGTTTCCTCGCATGAAGCTTCCAACTGTTACATCTTCAACAGCTGTGAGTTCTGAAATGAACGTAATGCAAGATAAAGTTAAGAAGCTTGAATCAACTGTGGACACTATGCGGTCACAAAATGCACAGCTAATGACAATGTTGAAGAAGTTCCTGATGAATAGCCAAGGCTGTTTTGCTGATACAGAAAACATTGACATGAATATCGTAGTACCCAACAGTGAAGAAGATGATGTCTTTGGAAGAGATGAAGACGGTGTCCAAAACAATGGAGATAATTCTGAAACAGAGGATTTGGAGGAAGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

277

Amino Acids

31.76

Weight (kDa)

5.79

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 42 - 178 2.4e-13 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 14
AccII CGCG 1 cut(s) 457
AciI CCGC 2 cut(s) 228, 634
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 501
AcvI CACGTG 1 cut(s) 353
AfaI GTAC 3 cut(s) 427, 444, 735
AgsI TTSAA 7 cut(s) 25, 192, 248, 324, 561, 614, 667
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 6 cut(s) 233, 308, 541, 566, 610, 652
AluI AGCT 6 cut(s) 233, 308, 541, 566, 610, 652
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 305, 347
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 2 cut(s) 6, 457
AsuHPI GGTGA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 415
BbrPI CACGTG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 780
BbvI GCAGC 2 cut(s) 317, 334
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 195, 410
BisI GCNGC 2 cut(s) 306, 348
BlsI GCNGC 2 cut(s) 307, 349
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 2 cut(s) 229, 334
BpiI GAAGAC 1 cut(s) 780
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 45, 470
BsaJI CCNNGG 2 cut(s) 267, 688
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bse8I GATNNNNATC 2 cut(s) 45, 470
BseDI CCNNGG 2 cut(s) 267, 688
BseJI GATNNNNATC 2 cut(s) 45, 470
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 317, 334
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 415
BslFI GGGAC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 5 cut(s) 40, 97, 113, 157, 364
BspACI CCGC 2 cut(s) 228, 634
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 267, 688
BssMI GATC 5 cut(s) 40, 97, 113, 157, 364
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 267, 688
Bst1107I GTATAC 1 cut(s) 15
Bst4CI ACNGT 4 cut(s) 550, 622, 743, 779
Bst6I CTCTTC 3 cut(s) 381, 477, 760
BstAUI TGTACA 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 353
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 2 cut(s) 6, 457
BstKTI GATC 5 cut(s) 43, 100, 116, 160, 367
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 5 cut(s) 40, 97, 113, 157, 364
BstNSI RCATGY 1 cut(s) 254
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 317, 334
BstV2I GAAGAC 1 cut(s) 780
BstXI CCANNNNNNTGG 1 cut(s) 791
BstZ17I GTATAC 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 748
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 2 cut(s) 6, 457
Csp6I GTAC 3 cut(s) 426, 443, 734
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 4 cut(s) 251, 475, 535, 721
CviQI GTAC 3 cut(s) 426, 443, 734
DpnI GATC 5 cut(s) 42, 99, 115, 159, 366
DpnII GATC 5 cut(s) 40, 97, 113, 157, 364
Eam1104I CTCTTC 3 cut(s) 381, 477, 760
EarI CTCTTC 3 cut(s) 381, 477, 760
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 267, 688
Eco57I CTGAAG 1 cut(s) 501
Eco72I CACGTG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 267, 688
ErhI CCWWGG 2 cut(s) 267, 688
FaeI CATG 4 cut(s) 254, 478, 538, 724
FaqI GGGAC 1 cut(s) 87
FatI CATG 4 cut(s) 250, 474, 534, 720
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 306, 348
Fsp4HI GCNGC 2 cut(s) 306, 348
FspBI CTAG 2 cut(s) 195, 410
GlaI GCGC 2 cut(s) 5, 456
GluI GCNGC 2 cut(s) 306, 348
HhaI GCGC 2 cut(s) 6, 457
Hin1II CATG 4 cut(s) 254, 478, 538, 724
Hin6I GCGC 2 cut(s) 4, 455
HinP1I GCGC 2 cut(s) 4, 455
HindIII AAGCTT 2 cut(s) 539, 608
HinfI GANTC 4 cut(s) 320, 437, 466, 614
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 15, 625
Hpy188I TCNGA 2 cut(s) 577, 805
Hpy188III TCNNGA 2 cut(s) 317, 676
Hpy8I GTNNAC 2 cut(s) 15, 625
HpyAV CCTTC 2 cut(s) 486, 490
HpyCH4III ACNGT 4 cut(s) 550, 622, 743, 779
HpyCH4IV ACGT 2 cut(s) 352, 585
HpyCH4V TGCA 5 cut(s) 37, 180, 350, 592, 647
HpySE526I ACGT 2 cut(s) 352, 585
Hsp92II CATG 4 cut(s) 254, 478, 538, 724
HspAI GCGC 2 cut(s) 4, 455
Kzo9I GATC 5 cut(s) 40, 97, 113, 157, 364
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 4 cut(s) 108, 432, 447, 689
Lsp1109I GCAGC 2 cut(s) 317, 334
LweI GCATC 2 cut(s) 229, 334
MaeI CTAG 2 cut(s) 195, 410
MaeII ACGT 2 cut(s) 352, 585
MaeIII GTNAC 3 cut(s) 448, 550, 636
MalI GATC 5 cut(s) 42, 99, 115, 159, 366
MboI GATC 5 cut(s) 40, 97, 113, 157, 364
MboII GAAGA 9 cut(s) 196, 398, 494, 549, 679, 758, 761, 777, 785
MfeI CAATTG 2 cut(s) 298, 331
MluCI AATT 5 cut(s) 20, 187, 298, 331, 799
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 9 cut(s) 99, 115, 252, 265, 406, 415, 540, 805, 814
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 566
MunI CAATTG 2 cut(s) 298, 331
MvnI CGCG 1 cut(s) 457
NdeII GATC 5 cut(s) 40, 97, 113, 157, 364
NlaIII CATG 4 cut(s) 254, 478, 538, 724
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 636
NspI RCATGY 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 4 cut(s) 320, 437, 466, 614
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 2 cut(s) 307, 349
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 353
PspCI CACGTG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 3 cut(s) 427, 444, 735
RsaNI GTAC 3 cut(s) 426, 443, 734
RseI CAYNNNNRTG 1 cut(s) 719
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 2 cut(s) 306, 348
Sau3AI GATC 5 cut(s) 40, 97, 113, 157, 364
SetI ASST 9 cut(s) 97, 235, 310, 355, 543, 568, 588, 612, 654
SfaNI GCATC 2 cut(s) 229, 334
SmiMI CAYNNNNRTG 1 cut(s) 719
Sse9I AATT 5 cut(s) 20, 187, 298, 331, 799
SsiI CCGC 2 cut(s) 228, 634
SspMI CTAG 2 cut(s) 195, 410
StyI CCWWGG 2 cut(s) 267, 688
TaaI ACNGT 4 cut(s) 550, 622, 743, 779
TaiI ACGT 2 cut(s) 355, 588
TaqI TCGA 2 cut(s) 116, 367
TasI AATT 5 cut(s) 20, 187, 298, 331, 799
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 4 cut(s) 320, 437, 466, 614
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 2 cut(s) 305, 347
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 8 cut(s) 159, 232, 280, 551, 596, 695, 737, 786
TspRI CASTG 1 cut(s) 748
Tth111I GACNNNGTC 1 cut(s) 779
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 195, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.