Rmu_sc0007822.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007822.1
OG0000090
Physical Location & Seq
Forward (+)
22292 .. 23503
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007822.1_g000007.1.cds

Sequence Viewer

Length: 849 bp
atgttatttgtaggggattctgattctacacttttgtgcacaaaacggaagcgtggaaagtcaattggaaaaggaacccttgatttgatgtcagcaaatggagggaagaaattgattgtggtttgggatccagatcattgggttcctagtgataagacagttagtaaaaagttcacttctgaaattggaattactattcgaggttatgctccagtatgttatggagggtggtctaagataaagcctgatactaagaggaaattgcgggagaagttggagaccctttttgaggttgatctccatcatccaaaagttcttgcatatgttgatggaataatggctatagcatacactcagtttaaatggagattgcataatcactacaaggagagtggaacatatgaacgggcacgagccaagttgcctgacccagacctttggaatagtagacctctagagcattggcattggttgtgcgataatctttatagcaatgagggatatatggaggtctgtgctactaatgctcaaaaccgagatcaacaggaaagtacccatcggggtggtgcaatgccatttattcagcatgctttgcaagcagcaaaggatgcagagcataagtgggttagtgaagctaaacgagtgagacatcaaatggacatgagcaacatgaagaggttgccaacgtttattcaagcactccatgcagggacatattgtctcattcctctcattcacatgatgttttgcaacctccataaaagatctaaccccttctttatactcttcactgaatttgtcctgcttaagtatccattccctatccatcttaacctaattccaatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

282

Amino Acids

32.67

Weight (kDa)

9.32

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 448
AciI CCGC 1 cut(s) 265
AclI AACGTT 1 cut(s) 686
AclWI GGATC 2 cut(s) 122, 135
AcsI RAATTY 1 cut(s) 794
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 1 cut(s) 289
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 1 cut(s) 695
AhdI GACNNNNNGTC 1 cut(s) 717
AleI CACNNNNGTG 1 cut(s) 34
AluBI AGCT 1 cut(s) 635
AluI AGCT 1 cut(s) 635
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 3 cut(s) 272, 640, 725
Alw44I GTGCAC 1 cut(s) 37
AlwI GGATC 2 cut(s) 122, 135
ApaLI GTGCAC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 794
BaeGI GKGCMC 2 cut(s) 41, 412
BamHI GGATCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 611
BccI CCATC 4 cut(s) 309, 323, 564, 834
BciVI GTATCC 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 272, 640, 725
BfaI CTAG 2 cut(s) 147, 455
BfmI CTRYAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 806
BfuI GTATCC 1 cut(s) 822
BglII AGATCT 1 cut(s) 764
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
BmeRI GACNNNNNGTC 1 cut(s) 717
BmiI GGNNCC 3 cut(s) 76, 129, 144
BmsI GCATC 1 cut(s) 598
BpmI CTGGAG 1 cut(s) 195
BsaBI GATNNNNATC 2 cut(s) 132, 300
BsaI GGTCTC 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 2 cut(s) 499, 576
Bse8I GATNNNNATC 2 cut(s) 132, 300
BseGI GGATG 2 cut(s) 304, 613
BseJI GATNNNNATC 2 cut(s) 132, 300
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 2 cut(s) 499, 576
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 2 cut(s) 41, 412
BseXI GCAGC 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 3 cut(s) 272, 640, 725
BsmFI GGGAC 1 cut(s) 724
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 41, 412
Bsp143I GATC 5 cut(s) 127, 133, 295, 538, 764
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 76, 129, 144
BspPI GGATC 2 cut(s) 122, 135
BspTI CTTAAG 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 499, 576
BsrI ACTGG 1 cut(s) 212
BssMI GATC 5 cut(s) 127, 133, 295, 538, 764
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 668, 791
BstAFI CTTAAG 1 cut(s) 806
BstAPI GCANNNNNTGC 3 cut(s) 592, 608, 704
BstC8I GCNNGC 2 cut(s) 588, 597
BstDEI CTNAG 3 cut(s) 234, 252, 354
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 304, 613
BstKTI GATC 5 cut(s) 130, 136, 298, 541, 767
BstMAI GTCTC 3 cut(s) 272, 640, 725
BstMBI GATC 5 cut(s) 127, 133, 295, 538, 764
BstMWI GCNNNNNNNGC 5 cut(s) 524, 592, 596, 608, 704
BstNSI RCATGY 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 2 cut(s) 41, 412
BstV1I GCAGC 1 cut(s) 611
BstX2I RGATCY 2 cut(s) 127, 764
BstXI CCANNNNNNTGG 3 cut(s) 138, 438, 563
BstYI RGATCY 2 cut(s) 127, 764
BsuI GTATCC 1 cut(s) 822
BtsCI GGATG 2 cut(s) 304, 613
BtsIMutI CAGTG 1 cut(s) 789
Cac8I GCNNGC 2 cut(s) 588, 597
Csp6I GTAC 1 cut(s) 552
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 5 cut(s) 587, 661, 670, 704, 739
CviJI RGCY 4 cut(s) 244, 341, 416, 635
CviKI_1 RGCY 4 cut(s) 244, 341, 416, 635
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 3 cut(s) 234, 252, 354
DpnI GATC 5 cut(s) 129, 135, 297, 540, 766
DpnII GATC 5 cut(s) 127, 133, 295, 538, 764
DraI TTTAAA 1 cut(s) 361
DriI GACNNNNNGTC 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 668, 791
Eam1105I GACNNNNNGTC 1 cut(s) 717
EarI CTCTTC 2 cut(s) 668, 791
Eco31I GGTCTC 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 287
FaeI CATG 5 cut(s) 590, 664, 673, 707, 742
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 724
FatI CATG 5 cut(s) 586, 660, 669, 703, 738
FauI CCCGC 1 cut(s) 258
FauNDI CATATG 2 cut(s) 322, 400
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 2 cut(s) 291, 620
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 2 cut(s) 147, 455
GluI GCNGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 195
Hin1II CATG 5 cut(s) 590, 664, 673, 707, 742
HinfI GANTC 2 cut(s) 17, 23
Hpy166II GTNNAC 3 cut(s) 39, 174, 449
Hpy188I TCNGA 2 cut(s) 22, 181
Hpy188III TCNNGA 2 cut(s) 131, 455
Hpy8I GTNNAC 3 cut(s) 39, 174, 449
HpyAV CCTTC 1 cut(s) 784
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 686
HpyCH4V TGCA 8 cut(s) 39, 320, 373, 569, 595, 611, 707, 750
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 592, 596, 608, 704
HpyF3I CTNAG 3 cut(s) 234, 252, 354
HpySE526I ACGT 1 cut(s) 686
Hsp92II CATG 5 cut(s) 590, 664, 673, 707, 742
Kzo9I GATC 5 cut(s) 127, 133, 295, 538, 764
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 8 cut(s) 144, 225, 258, 438, 444, 530, 693, 815
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 1 cut(s) 598
MaeI CTAG 2 cut(s) 147, 455
MaeII ACGT 1 cut(s) 686
MalI GATC 5 cut(s) 129, 135, 297, 540, 766
MboI GATC 5 cut(s) 127, 133, 295, 538, 764
MboII GAAGA 3 cut(s) 118, 685, 778
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 2 cut(s) 127, 764
MhlI GDGCHC 2 cut(s) 41, 412
MluCI AATT 7 cut(s) 63, 110, 183, 189, 260, 794, 837
MmeI TCCRAC 1 cut(s) 255
MseI TTAA 3 cut(s) 360, 807, 831
MslI CAYNNNNRTG 3 cut(s) 34, 561, 737
MspCI CTTAAG 1 cut(s) 806
MunI CAATTG 1 cut(s) 63
MwoI GCNNNNNNNGC 5 cut(s) 524, 592, 596, 608, 704
NdeI CATATG 2 cut(s) 322, 400
NdeII GATC 5 cut(s) 127, 133, 295, 538, 764
NlaIII CATG 5 cut(s) 590, 664, 673, 707, 742
NlaIV GGNNCC 3 cut(s) 76, 129, 144
NspI RCATGY 1 cut(s) 590
OliI CACNNNNGTG 1 cut(s) 34
PaeI GCATGC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 17, 23
PkrI GCNGC 1 cut(s) 601
Psp1406I AACGTT 1 cut(s) 686
PspN4I GGNNCC 3 cut(s) 76, 129, 144
PsuI RGATCY 2 cut(s) 127, 764
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 3 cut(s) 34, 561, 737
SaqAI TTAA 3 cut(s) 360, 807, 831
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 5 cut(s) 127, 133, 295, 538, 764
SduI GDGCHC 2 cut(s) 41, 412
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 3 cut(s) 34, 561, 737
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
SphI GCATGC 1 cut(s) 590
Sse9I AATT 7 cut(s) 63, 110, 183, 189, 260, 794, 837
SsiI CCGC 1 cut(s) 265
SspMI CTAG 2 cut(s) 147, 455
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 689
TaqI TCGA 1 cut(s) 199
TasI AATT 7 cut(s) 63, 110, 183, 189, 260, 794, 837
TfiI GAWTC 2 cut(s) 17, 23
Tru1I TTAA 3 cut(s) 360, 807, 831
Tru9I TTAA 3 cut(s) 360, 807, 831
TscAI CASTG 1 cut(s) 796
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 2 cut(s) 417, 686
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 796
Vha464I CTTAAG 1 cut(s) 806
VneI GTGCAC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 794
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 2 cut(s) 147, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.